Wall clock time and date at job start Mon Mar 30 2020 07:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29026 * 124.91454 * 2 1 4 4 C 1.31788 * 117.12464 * 179.74873 * 3 2 1 5 5 C 1.50691 * 122.75104 * 180.33264 * 4 3 2 6 6 C 1.33638 * 114.49642 * 0.52306 * 4 3 2 7 7 C 1.50699 * 126.03647 * 179.79353 * 6 4 3 8 8 H 1.09008 * 109.46750 * 344.83889 * 7 6 4 9 9 C 1.53000 * 109.47671 * 104.83917 * 7 6 4 10 10 N 1.46904 * 109.46983 * 224.84270 * 7 6 4 11 11 C 1.46898 * 111.00015 * 182.38985 * 10 7 6 12 12 C 1.46901 * 111.00041 * 58.43193 * 10 7 6 13 13 H 1.08996 * 109.47338 * 308.47969 * 12 10 7 14 14 C 1.53003 * 109.46918 * 68.47579 * 12 10 7 15 15 C 1.50698 * 109.46995 * 188.47289 * 12 10 7 16 16 H 1.07998 * 119.99905 * 0.02562 * 15 12 10 17 17 C 1.37879 * 119.99613 * 180.02562 * 15 12 10 18 18 N 1.31522 * 119.99554 * 180.02562 * 17 15 12 19 19 Si 1.86798 * 120.00477 * 0.02562 * 17 15 12 20 20 H 1.48493 * 109.47313 * 89.99651 * 19 17 15 21 21 H 1.48501 * 109.47216 * 210.00072 * 19 17 15 22 22 H 1.48510 * 109.46844 * 329.99780 * 19 17 15 23 23 S 1.70972 * 124.91673 * 180.02562 * 2 1 3 24 24 H 1.08999 * 109.47313 * 269.95860 * 1 2 3 25 25 H 1.08995 * 109.47330 * 29.96057 * 1 2 3 26 26 H 1.09003 * 109.46998 * 149.96127 * 1 2 3 27 27 H 1.09001 * 109.47250 * 270.20190 * 5 4 3 28 28 H 1.09003 * 109.47366 * 30.19999 * 5 4 3 29 29 H 1.08998 * 109.47370 * 150.19964 * 5 4 3 30 30 H 1.09000 * 109.46830 * 64.13603 * 9 7 6 31 31 H 1.08998 * 109.47096 * 304.13989 * 9 7 6 32 32 H 1.08999 * 109.47112 * 184.13919 * 9 7 6 33 33 H 1.08998 * 109.47166 * 66.34958 * 11 10 7 34 34 H 1.08995 * 109.47055 * 186.35518 * 11 10 7 35 35 H 1.09004 * 109.46946 * 306.35016 * 11 10 7 36 36 H 1.09004 * 109.46947 * 65.76882 * 14 12 10 37 37 H 1.08996 * 109.47429 * 185.76578 * 14 12 10 38 38 H 1.09002 * 109.47606 * 305.77086 * 14 12 10 39 39 H 0.96998 * 119.99623 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0051 5 6 4.5307 2.0246 0.0131 6 6 3.9354 -0.4005 -0.0014 7 6 5.3575 -0.8993 -0.0021 8 1 6.0290 -0.0820 -0.2655 9 6 5.7147 -1.4244 1.3898 10 7 5.4958 -1.9827 -0.9846 11 6 6.8578 -2.5330 -0.9731 12 6 5.1246 -1.5240 -2.3299 13 1 4.1444 -1.0488 -2.2941 14 6 6.1619 -0.5164 -2.8294 15 6 5.0775 -2.7030 -3.2674 16 1 5.3006 -3.6939 -2.9004 17 6 4.7496 -2.5164 -4.5935 18 7 4.7080 -3.5454 -5.4116 19 14 4.3645 -0.8024 -5.2284 20 1 5.6149 -0.1582 -5.7043 21 1 3.3975 -0.8962 -6.3515 22 1 3.7746 0.0099 -4.1339 23 16 2.4856 -1.4019 -0.0006 24 1 -0.3634 -0.0007 1.0276 25 1 -0.3634 0.8903 -0.5132 26 1 -0.3633 -0.8897 -0.5145 27 1 4.7686 2.3064 -1.0126 28 1 4.0896 2.8764 0.5309 29 1 5.4423 1.7194 0.5269 30 1 5.0922 -2.2883 1.6230 31 1 5.5417 -0.6420 2.1287 32 1 6.7645 -1.7170 1.4094 33 1 7.0414 -3.0287 -0.0199 34 1 6.9654 -3.2534 -1.7840 35 1 7.5772 -1.7251 -1.1071 36 1 7.1206 -1.0177 -2.9629 37 1 5.8343 -0.0995 -3.7817 38 1 6.2701 0.2860 -2.0995 39 1 4.4770 -3.4143 -6.3445 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259831632.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:56 Heat of formation + Delta-G solvation = 50.514800 kcal Electronic energy + Delta-G solvation = -19486.965205 eV Core-core repulsion = 16749.778972 eV Total energy + Delta-G solvation = -2737.186234 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.75503 -37.84000 -33.71352 -32.48406 -31.10941 -29.24779 -28.77247 -26.97718 -25.20809 -25.02540 -22.53609 -21.57946 -19.59214 -18.19479 -17.37932 -16.66869 -15.40961 -15.20744 -15.02555 -14.49265 -13.62660 -13.47719 -13.26109 -13.10825 -13.01083 -12.62274 -12.33350 -12.27038 -12.23037 -12.10538 -11.83945 -11.72423 -11.41596 -11.17851 -10.91953 -10.87739 -10.65505 -10.28959 -10.06563 -9.52373 -9.24534 -9.07492 -8.70094 -8.54466 -8.17872 -7.44173 -6.07917 -4.05161 1.09071 1.78008 2.25573 3.08806 3.24287 3.36789 3.37776 4.35585 4.39005 4.66105 5.05787 5.20905 5.23993 5.43813 5.47974 5.51263 5.52210 5.58417 5.76422 5.83859 5.88321 5.96028 6.03472 6.08890 6.15614 6.19068 6.25238 6.26776 6.37532 6.54638 6.57398 6.70838 6.86875 7.15792 7.61978 7.87018 8.01742 8.10332 8.63138 8.99634 9.55056 11.05118 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.008731 C = 0.007379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.817276 B = 3206.012805 C = 3793.681020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.010 3.990 3 N -0.475 5.475 4 C 0.046 3.954 5 C -0.074 4.074 6 C -0.193 4.193 7 C 0.147 3.853 8 H 0.056 0.944 9 C -0.140 4.140 10 N -0.518 5.518 11 C 0.032 3.968 12 C 0.181 3.819 13 H 0.040 0.960 14 C -0.185 4.185 15 C -0.499 4.499 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.899 5.899 19 Si 0.879 3.121 20 H -0.280 1.280 21 H -0.296 1.296 22 H -0.270 1.270 23 S 0.182 5.818 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.016 0.984 36 H 0.057 0.943 37 H 0.042 0.958 38 H 0.028 0.972 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.141 7.002 12.971 14.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.267 4.267 3 N -0.191 5.191 4 C -0.086 4.086 5 C -0.133 4.133 6 C -0.315 4.315 7 C 0.036 3.964 8 H 0.074 0.926 9 C -0.198 4.198 10 N -0.242 5.242 11 C -0.116 4.116 12 C 0.073 3.927 13 H 0.057 0.943 14 C -0.244 4.244 15 C -0.537 4.537 16 H 0.101 0.899 17 C -0.129 4.129 18 N -0.537 5.537 19 Si 0.710 3.290 20 H -0.207 1.207 21 H -0.223 1.223 22 H -0.195 1.195 23 S 0.439 5.561 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.034 0.966 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.017 5.968 12.918 14.547 hybrid contribution 0.967 2.370 -0.967 2.737 sum -2.050 8.339 11.952 14.717 Atomic orbital electron populations 1.20336 0.85784 1.03896 1.03165 1.26919 1.01648 0.92695 1.05485 1.66072 1.04281 1.32222 1.16547 1.19996 0.90272 0.93850 1.04519 1.20287 0.95786 0.94665 1.02584 1.25642 0.99970 0.95405 1.10495 1.20038 0.88277 0.93986 0.94124 0.92611 1.21891 1.01783 1.01295 0.94821 1.62340 1.24972 1.29937 1.06959 1.22312 0.88190 0.99235 1.01892 1.19803 0.93585 0.94223 0.85102 0.94252 1.22811 1.02406 0.99527 0.99636 1.20900 1.46596 0.94041 0.92143 0.89879 1.24855 0.95035 0.96162 0.96812 1.69872 1.49146 1.29758 1.04935 0.86991 0.77833 0.85760 0.78434 1.20749 1.22333 1.19489 1.84151 0.95883 1.10045 1.66030 0.90198 0.89890 0.90261 0.91159 0.91076 0.91098 0.91674 0.92725 0.91961 0.93018 0.89647 0.96595 0.92438 0.93929 0.95307 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.46 36.01 0.38 -0.46 16 2 C 0.01 0.15 7.39 -13.46 -0.10 0.05 16 3 N -0.48 -8.46 10.53 -8.06 -0.08 -8.54 16 4 C 0.05 0.81 6.74 -84.23 -0.57 0.24 16 5 C -0.07 -1.05 9.81 36.00 0.35 -0.70 16 6 C -0.19 -3.42 3.83 -35.92 -0.14 -3.56 16 7 C 0.15 2.48 1.97 -68.86 -0.14 2.35 16 8 H 0.06 0.94 5.15 -51.92 -0.27 0.67 16 9 C -0.14 -1.93 8.73 37.16 0.32 -1.60 16 10 N -0.52 -10.35 4.48 -229.68 -1.03 -11.38 16 11 C 0.03 0.58 7.98 60.06 0.48 1.05 16 12 C 0.18 4.23 1.72 -68.86 -0.12 4.11 16 13 H 0.04 1.00 5.52 -51.93 -0.29 0.72 16 14 C -0.19 -4.07 7.79 37.16 0.29 -3.78 16 15 C -0.50 -13.74 8.39 -34.44 -0.29 -14.03 16 16 H 0.08 2.48 7.32 -52.49 -0.38 2.10 16 17 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 18 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 19 Si 0.88 22.43 24.31 -169.99 -4.13 18.30 16 20 H -0.28 -6.97 6.92 56.52 0.39 -6.58 16 21 H -0.30 -7.57 7.11 56.52 0.40 -7.16 16 22 H -0.27 -6.84 6.53 56.52 0.37 -6.47 16 23 S 0.18 3.11 22.74 -107.50 -2.44 0.67 16 24 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.88 7.04 -51.93 -0.37 0.51 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.78 6.75 -51.93 -0.35 0.43 16 33 H 0.05 0.80 6.73 -51.93 -0.35 0.45 16 34 H 0.08 1.75 6.53 -51.93 -0.34 1.41 16 35 H 0.02 0.27 6.97 -51.93 -0.36 -0.10 16 36 H 0.06 1.23 6.92 -51.93 -0.36 0.87 16 37 H 0.04 0.99 3.44 -51.93 -0.18 0.81 16 38 H 0.03 0.55 6.43 -51.93 -0.33 0.22 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 310.95 15.07 4.69 4.69 Total: -1.00 -31.33 310.95 -7.57 -38.90 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -5.71 Total: -1.80 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 0.38 Total: -14.32 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: -0.34 Total: -46.43 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.13 Total: 18.30 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -2.44 Total: 0.67 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.33 -7.57 -38.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259831632.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.415 kcal (2) G-P(sol) polarization free energy of solvation -31.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds