Wall clock time and date at job start Mon Mar 30 2020 07:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29026 * 124.91454 * 2 1 4 4 C 1.31788 * 117.12464 * 179.74873 * 3 2 1 5 5 C 1.50691 * 122.75104 * 180.33264 * 4 3 2 6 6 C 1.33638 * 114.49642 * 0.52306 * 4 3 2 7 7 C 1.50699 * 126.03647 * 179.79353 * 6 4 3 8 8 H 1.09008 * 109.46750 * 344.83889 * 7 6 4 9 9 C 1.53000 * 109.47671 * 104.83917 * 7 6 4 10 10 N 1.46904 * 109.46983 * 224.84270 * 7 6 4 11 11 C 1.46898 * 111.00015 * 182.38985 * 10 7 6 12 12 C 1.46901 * 111.00041 * 58.43193 * 10 7 6 13 13 H 1.08996 * 109.47338 * 308.47969 * 12 10 7 14 14 C 1.53003 * 109.46918 * 68.47579 * 12 10 7 15 15 C 1.50698 * 109.46995 * 188.47289 * 12 10 7 16 16 H 1.07998 * 119.99905 * 0.02562 * 15 12 10 17 17 C 1.37879 * 119.99613 * 180.02562 * 15 12 10 18 18 N 1.31522 * 119.99554 * 180.02562 * 17 15 12 19 19 Si 1.86798 * 120.00477 * 0.02562 * 17 15 12 20 20 H 1.48493 * 109.47313 * 89.99651 * 19 17 15 21 21 H 1.48501 * 109.47216 * 210.00072 * 19 17 15 22 22 H 1.48510 * 109.46844 * 329.99780 * 19 17 15 23 23 S 1.70972 * 124.91673 * 180.02562 * 2 1 3 24 24 H 1.08999 * 109.47313 * 269.95860 * 1 2 3 25 25 H 1.08995 * 109.47330 * 29.96057 * 1 2 3 26 26 H 1.09003 * 109.46998 * 149.96127 * 1 2 3 27 27 H 1.09001 * 109.47250 * 270.20190 * 5 4 3 28 28 H 1.09003 * 109.47366 * 30.19999 * 5 4 3 29 29 H 1.08998 * 109.47370 * 150.19964 * 5 4 3 30 30 H 1.09000 * 109.46830 * 64.13603 * 9 7 6 31 31 H 1.08998 * 109.47096 * 304.13989 * 9 7 6 32 32 H 1.08999 * 109.47112 * 184.13919 * 9 7 6 33 33 H 1.08998 * 109.47166 * 66.34958 * 11 10 7 34 34 H 1.08995 * 109.47055 * 186.35518 * 11 10 7 35 35 H 1.09004 * 109.46946 * 306.35016 * 11 10 7 36 36 H 1.09004 * 109.46947 * 65.76882 * 14 12 10 37 37 H 1.08996 * 109.47429 * 185.76578 * 14 12 10 38 38 H 1.09002 * 109.47606 * 305.77086 * 14 12 10 39 39 H 0.96998 * 119.99623 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0051 5 6 4.5307 2.0246 0.0131 6 6 3.9354 -0.4005 -0.0014 7 6 5.3575 -0.8993 -0.0021 8 1 6.0290 -0.0820 -0.2655 9 6 5.7147 -1.4244 1.3898 10 7 5.4958 -1.9827 -0.9846 11 6 6.8578 -2.5330 -0.9731 12 6 5.1246 -1.5240 -2.3299 13 1 4.1444 -1.0488 -2.2941 14 6 6.1619 -0.5164 -2.8294 15 6 5.0775 -2.7030 -3.2674 16 1 5.3006 -3.6939 -2.9004 17 6 4.7496 -2.5164 -4.5935 18 7 4.7080 -3.5454 -5.4116 19 14 4.3645 -0.8024 -5.2284 20 1 5.6149 -0.1582 -5.7043 21 1 3.3975 -0.8962 -6.3515 22 1 3.7746 0.0099 -4.1339 23 16 2.4856 -1.4019 -0.0006 24 1 -0.3634 -0.0007 1.0276 25 1 -0.3634 0.8903 -0.5132 26 1 -0.3633 -0.8897 -0.5145 27 1 4.7686 2.3064 -1.0126 28 1 4.0896 2.8764 0.5309 29 1 5.4423 1.7194 0.5269 30 1 5.0922 -2.2883 1.6230 31 1 5.5417 -0.6420 2.1287 32 1 6.7645 -1.7170 1.4094 33 1 7.0414 -3.0287 -0.0199 34 1 6.9654 -3.2534 -1.7840 35 1 7.5772 -1.7251 -1.1071 36 1 7.1206 -1.0177 -2.9629 37 1 5.8343 -0.0995 -3.7817 38 1 6.2701 0.2860 -2.0995 39 1 4.4770 -3.4143 -6.3445 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259831632.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:55 Heat of formation + Delta-G solvation = 28.906114 kcal Electronic energy + Delta-G solvation = -19487.902228 eV Core-core repulsion = 16749.778972 eV Total energy + Delta-G solvation = -2738.123256 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.04340 -39.36107 -35.38426 -34.06800 -32.71054 -30.60402 -29.98695 -28.23289 -27.22925 -26.47403 -23.72597 -23.11051 -21.19328 -19.50689 -18.84174 -18.57060 -17.17058 -16.61560 -16.41703 -15.95598 -15.25286 -15.02325 -14.67792 -14.30252 -14.20026 -14.11953 -13.88663 -13.79103 -13.53415 -13.23305 -13.20307 -12.96337 -12.81281 -12.65150 -12.64044 -12.25978 -12.12663 -11.96572 -11.82286 -11.47899 -11.08287 -10.78707 -10.51815 -10.00180 -9.42804 -8.98443 -8.30117 -6.29613 -0.17542 0.52178 0.98319 1.20932 1.28460 1.35707 1.82085 2.26344 3.04415 3.18209 3.25574 3.80401 4.10441 4.20655 4.28671 4.37005 4.42652 4.47458 4.56424 4.61105 4.63418 4.66190 4.70979 4.76899 4.79300 4.92089 4.96785 5.00316 5.02591 5.09722 5.24585 5.30124 5.39302 5.43757 5.63437 6.03460 6.39454 6.66077 6.76593 6.83175 7.34059 8.86724 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.008731 C = 0.007379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.817276 B = 3206.012805 C = 3793.681020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.018 3.982 3 N -0.498 5.498 4 C 0.038 3.962 5 C -0.074 4.074 6 C -0.212 4.212 7 C 0.148 3.852 8 H 0.065 0.935 9 C -0.133 4.133 10 N -0.533 5.533 11 C 0.036 3.964 12 C 0.191 3.809 13 H 0.023 0.977 14 C -0.181 4.181 15 C -0.492 4.492 16 H 0.046 0.954 17 C 0.021 3.979 18 N -0.944 5.944 19 Si 0.937 3.063 20 H -0.267 1.267 21 H -0.298 1.298 22 H -0.267 1.267 23 S 0.147 5.853 24 H 0.105 0.895 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.031 0.969 36 H 0.058 0.942 37 H 0.030 0.970 38 H 0.058 0.942 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.922 9.077 14.512 17.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.259 4.259 3 N -0.214 5.214 4 C -0.095 4.095 5 C -0.133 4.133 6 C -0.334 4.334 7 C 0.038 3.962 8 H 0.082 0.918 9 C -0.190 4.190 10 N -0.256 5.256 11 C -0.112 4.112 12 C 0.082 3.918 13 H 0.041 0.959 14 C -0.239 4.239 15 C -0.530 4.530 16 H 0.065 0.935 17 C -0.177 4.177 18 N -0.585 5.585 19 Si 0.766 3.234 20 H -0.193 1.193 21 H -0.226 1.226 22 H -0.192 1.192 23 S 0.404 5.596 24 H 0.124 0.876 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.777 8.053 14.485 16.804 hybrid contribution 0.851 1.668 -1.351 2.309 sum -1.926 9.721 13.134 16.453 Atomic orbital electron populations 1.20551 0.82945 1.04755 1.05095 1.27636 1.03255 0.91625 1.03363 1.66170 1.04744 1.32664 1.17858 1.20510 0.90735 0.94631 1.03587 1.20392 0.95965 0.94136 1.02792 1.25763 1.00167 0.95540 1.11906 1.20153 0.88184 0.93233 0.94633 0.91781 1.21853 1.02501 1.01514 0.93180 1.62205 1.26151 1.31565 1.05723 1.22274 0.87654 0.99080 1.02189 1.19458 0.93464 0.92540 0.86313 0.95929 1.22696 1.01690 0.99868 0.99695 1.21148 1.44837 0.94183 0.92864 0.93543 1.25550 0.95411 0.99441 0.97261 1.70006 1.51261 1.31897 1.05359 0.86054 0.78006 0.81706 0.77684 1.19313 1.22587 1.19171 1.84232 0.97042 1.11484 1.66877 0.87627 0.89230 0.89092 0.91495 0.89838 0.89160 0.92517 0.90823 0.90359 0.90151 0.92951 0.95078 0.92295 0.95182 0.92333 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.57 10.46 71.24 0.75 -0.82 16 2 C 0.02 0.57 7.39 88.52 0.65 1.22 16 3 N -0.50 -16.84 10.53 -179.41 -1.89 -18.73 16 4 C 0.04 1.23 6.74 41.52 0.28 1.51 16 5 C -0.07 -1.88 9.81 71.23 0.70 -1.18 16 6 C -0.21 -7.15 3.83 24.64 0.09 -7.06 16 7 C 0.15 4.66 1.97 44.17 0.09 4.75 16 8 H 0.06 1.92 5.15 -2.38 -0.01 1.90 16 9 C -0.13 -3.26 8.73 71.98 0.63 -2.63 16 10 N -0.53 -20.67 4.48 -880.58 -3.95 -24.62 16 11 C 0.04 1.24 7.98 127.69 1.02 2.26 16 12 C 0.19 8.82 1.72 44.17 0.08 8.89 16 13 H 0.02 1.14 5.52 -2.39 -0.01 1.13 16 14 C -0.18 -7.58 7.79 71.98 0.56 -7.02 16 15 C -0.49 -27.65 8.39 25.60 0.21 -27.43 16 16 H 0.05 2.90 7.32 -2.91 -0.02 2.87 16 17 C 0.02 1.21 5.45 84.65 0.46 1.67 16 18 N -0.94 -58.86 13.96 21.45 0.30 -58.56 16 19 Si 0.94 46.47 24.31 68.60 1.67 48.14 16 20 H -0.27 -12.57 6.92 99.48 0.69 -11.88 16 21 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 22 H -0.27 -12.98 6.53 99.48 0.65 -12.33 16 23 S 0.15 4.93 22.74 -56.49 -1.28 3.64 16 24 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.09 1.91 7.04 -2.39 -0.02 1.89 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 1.66 6.75 -2.39 -0.02 1.65 16 33 H 0.08 2.31 6.73 -2.39 -0.02 2.29 16 34 H 0.05 2.16 6.53 -2.39 -0.02 2.15 16 35 H 0.03 0.98 6.97 -2.38 -0.02 0.96 16 36 H 0.06 2.42 6.92 -2.38 -0.02 2.40 16 37 H 0.03 1.32 3.44 -2.39 -0.01 1.32 16 38 H 0.06 2.08 6.43 -2.39 -0.02 2.07 16 39 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -68.31 310.95 1.34 -66.98 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.97 Total: 8.98 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: 5.52 Total: -25.84 kcal Atomic # 7 Polarization: -96.36 SS G_CDS: -5.54 Total: -101.90 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.67 Total: 48.14 kcal Atomic # 16 Polarization: 4.93 SS G_CDS: -1.28 Total: 3.64 kcal Total: -68.31 1.34 -66.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259831632.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.881 kcal (2) G-P(sol) polarization free energy of solvation -68.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds