Wall clock time and date at job start Mon Mar 30 2020 07:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31781 * 122.75173 * 2 1 4 4 C 1.29027 * 117.12526 * 180.33403 * 3 2 1 5 5 S 1.70981 * 110.16550 * 359.70777 * 4 3 2 6 6 C 1.33635 * 122.74566 * 179.79072 * 2 1 3 7 7 C 1.50701 * 126.04374 * 359.97438 * 6 2 1 8 8 H 1.09001 * 109.46431 * 4.13840 * 7 6 2 9 9 C 1.52994 * 109.47181 * 244.14437 * 7 6 2 10 10 N 1.46897 * 109.47042 * 124.13765 * 7 6 2 11 11 C 1.46900 * 111.00481 * 326.32849 * 10 7 6 12 12 C 1.46910 * 110.99789 * 202.37180 * 10 7 6 13 13 C 1.53000 * 109.47189 * 303.47237 * 12 10 7 14 14 C 1.52996 * 109.46830 * 63.47123 * 12 10 7 15 15 C 1.50700 * 109.46990 * 183.46767 * 12 10 7 16 16 H 1.08004 * 119.99863 * 359.67496 * 15 12 10 17 17 C 1.37875 * 119.99853 * 179.66736 * 15 12 10 18 18 N 1.31514 * 120.00180 * 191.82172 * 17 15 12 19 19 Si 1.86796 * 119.99980 * 11.82788 * 17 15 12 20 20 H 1.48500 * 109.47617 * 89.96425 * 19 17 15 21 21 H 1.48503 * 109.47430 * 209.97016 * 19 17 15 22 22 H 1.48507 * 109.47042 * 329.96728 * 19 17 15 23 23 H 1.08992 * 109.47078 * 270.20878 * 1 2 3 24 24 H 1.09004 * 109.46994 * 30.20700 * 1 2 3 25 25 H 1.09004 * 109.47079 * 150.20366 * 1 2 3 26 26 H 1.07992 * 124.91787 * 179.67802 * 4 3 2 27 27 H 1.09010 * 109.46893 * 283.74003 * 9 7 6 28 28 H 1.09003 * 109.47473 * 43.73943 * 9 7 6 29 29 H 1.08999 * 109.47585 * 163.74501 * 9 7 6 30 30 H 1.09001 * 109.46889 * 67.53032 * 11 10 7 31 31 H 1.08999 * 109.46993 * 307.53180 * 11 10 7 32 32 H 1.08992 * 109.47106 * 187.53263 * 11 10 7 33 33 H 1.08994 * 109.47056 * 75.61213 * 13 12 10 34 34 H 1.08998 * 109.46865 * 195.61855 * 13 12 10 35 35 H 1.09005 * 109.46728 * 315.61604 * 13 12 10 36 36 H 1.08995 * 109.47342 * 54.39405 * 14 12 10 37 37 H 1.08997 * 109.47198 * 174.39809 * 14 12 10 38 38 H 1.09007 * 109.47160 * 294.39840 * 14 12 10 39 39 H 0.96996 * 120.00118 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2200 1.1083 0.0000 4 6 3.5040 0.9818 -0.0067 5 16 3.9333 -0.6732 -0.0058 6 6 2.2299 -1.1240 0.0041 7 6 1.6847 -2.5289 0.0098 8 1 0.5976 -2.4969 -0.0641 9 6 2.0871 -3.2269 1.3104 10 7 2.2317 -3.2710 -1.1339 11 6 2.4291 -2.3863 -2.2899 12 6 1.3711 -4.4093 -1.4830 13 6 1.1989 -5.3125 -0.2600 14 6 0.0026 -3.8947 -1.9336 15 6 2.0059 -5.1943 -2.6018 16 1 2.9512 -4.8762 -3.0161 17 6 1.3799 -6.3188 -3.0965 18 7 2.0285 -7.1323 -3.9010 19 14 -0.3896 -6.6867 -2.6243 20 1 -1.3062 -6.0485 -3.6029 21 1 -0.6075 -8.1557 -2.6270 22 1 -0.6619 -6.1484 -1.2673 23 1 -0.3633 0.0037 1.0276 24 1 -0.3633 0.8882 -0.5171 25 1 -0.3633 -0.8918 -0.5107 26 1 4.2060 1.8025 -0.0125 27 1 3.1364 -3.5174 1.2572 28 1 1.9407 -2.5457 2.1487 29 1 1.4711 -4.1149 1.4519 30 1 3.2229 -1.6725 -2.0697 31 1 1.5042 -1.8484 -2.4979 32 1 2.7067 -2.9816 -3.1597 33 1 0.5045 -4.8478 0.4399 34 1 0.8054 -6.2790 -0.5746 35 1 2.1644 -5.4539 0.2259 36 1 0.1332 -3.1741 -2.7409 37 1 -0.6017 -4.7303 -2.2866 38 1 -0.4988 -3.4128 -1.0941 39 1 1.5880 -7.9231 -4.2493 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259975050.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:24 Heat of formation + Delta-G solvation = 85.020430 kcal Electronic energy + Delta-G solvation = -19780.663560 eV Core-core repulsion = 17044.973603 eV Total energy + Delta-G solvation = -2735.689957 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.00763 -38.38147 -33.92852 -31.94052 -30.80580 -30.59573 -27.24061 -26.21665 -24.97375 -24.67178 -24.37912 -21.77612 -19.16077 -18.69332 -17.46489 -16.35355 -16.00219 -15.12721 -14.98228 -14.35018 -13.96119 -13.48375 -13.41115 -13.39739 -12.74184 -12.65486 -12.51067 -12.29310 -12.19930 -12.08268 -11.62711 -11.53762 -11.14242 -10.96705 -10.93043 -10.57614 -10.21214 -10.10098 -9.93651 -9.49589 -8.99713 -8.86880 -8.85331 -8.57602 -8.51652 -7.38882 -6.12165 -4.08381 0.86677 1.55395 1.98321 2.90125 3.23212 3.31708 3.37598 4.32108 4.35687 4.66396 4.96065 5.18128 5.21520 5.31887 5.53046 5.65344 5.67929 5.83818 5.89384 5.95254 6.06296 6.10080 6.19219 6.20425 6.28513 6.36148 6.40201 6.47425 6.56820 6.64355 6.73901 6.86035 6.96273 7.24012 7.64715 7.83222 7.92024 8.03609 8.61311 8.96175 9.51799 11.00609 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.030875 B = 0.006432 C = 0.006124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.678845 B = 4352.157982 C = 4571.099365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.046 3.954 3 N -0.469 5.469 4 C -0.008 4.008 5 S 0.153 5.847 6 C -0.191 4.191 7 C 0.143 3.857 8 H 0.066 0.934 9 C -0.152 4.152 10 N -0.510 5.510 11 C 0.026 3.974 12 C 0.210 3.790 13 C -0.143 4.143 14 C -0.182 4.182 15 C -0.500 4.500 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.893 5.893 19 Si 0.874 3.126 20 H -0.288 1.288 21 H -0.302 1.302 22 H -0.246 1.246 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.193 0.807 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.013 0.987 32 H 0.086 0.914 33 H 0.029 0.971 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.046 0.954 38 H 0.031 0.969 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.287 12.148 9.297 15.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 N -0.184 5.184 4 C -0.306 4.306 5 S 0.407 5.593 6 C -0.313 4.313 7 C 0.033 3.967 8 H 0.084 0.916 9 C -0.210 4.210 10 N -0.234 5.234 11 C -0.123 4.123 12 C 0.121 3.879 13 C -0.200 4.200 14 C -0.240 4.240 15 C -0.538 4.538 16 H 0.101 0.899 17 C -0.129 4.129 18 N -0.530 5.530 19 Si 0.705 3.295 20 H -0.216 1.216 21 H -0.230 1.230 22 H -0.171 1.171 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.210 0.790 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.032 0.968 32 H 0.104 0.896 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.953 11.833 9.328 15.097 hybrid contribution -2.611 0.204 -0.258 2.631 sum -1.657 12.036 9.070 15.162 Atomic orbital electron populations 1.20343 0.87566 1.03150 1.02565 1.20158 0.98035 0.86293 1.04142 1.66164 1.05185 1.31645 1.15373 1.28245 0.95372 1.01036 1.05932 1.84182 1.07269 1.01243 1.66595 1.25892 0.95287 1.00500 1.09584 1.20243 0.97188 0.85017 0.94258 0.91639 1.22323 1.03394 1.00784 0.94466 1.62504 1.48051 1.08230 1.04571 1.22484 0.98429 0.96187 0.95178 1.19038 0.87083 0.87540 0.94214 1.22639 0.99962 0.99877 0.97552 1.22946 1.00710 1.00633 0.99752 1.20776 1.07874 1.08895 1.16229 0.89939 1.24928 0.97586 0.95333 0.95032 1.69922 1.36360 1.12958 1.33779 0.87476 0.86265 0.75807 0.79915 1.21609 1.23026 1.17121 0.91000 0.90914 0.90776 0.78979 0.91453 0.93587 0.90201 0.93212 0.96810 0.89572 0.95200 0.92613 0.92197 0.92840 0.93518 0.95013 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 9.94 36.01 0.36 -0.62 16 2 C 0.05 0.68 6.74 -84.22 -0.57 0.11 16 3 N -0.47 -6.96 10.53 -11.90 -0.13 -7.08 16 4 C -0.01 -0.10 12.23 51.58 0.63 0.53 16 5 S 0.15 2.06 21.32 -107.50 -2.29 -0.24 16 6 C -0.19 -2.93 3.59 -35.92 -0.13 -3.06 16 7 C 0.14 2.37 2.11 -68.87 -0.15 2.23 16 8 H 0.07 1.10 4.00 -51.93 -0.21 0.89 16 9 C -0.15 -2.30 8.20 37.15 0.30 -1.99 16 10 N -0.51 -9.98 4.50 -221.95 -1.00 -10.98 16 11 C 0.03 0.50 7.71 60.06 0.46 0.96 16 12 C 0.21 4.61 0.43 -132.75 -0.06 4.56 16 13 C -0.14 -2.95 5.83 37.16 0.22 -2.74 16 14 C -0.18 -3.80 7.17 37.16 0.27 -3.53 16 15 C -0.50 -13.29 7.84 -34.44 -0.27 -13.56 16 16 H 0.08 2.42 6.96 -52.48 -0.37 2.05 16 17 C 0.07 2.03 5.31 -17.82 -0.09 1.93 16 18 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 19 Si 0.87 20.96 22.68 -169.99 -3.85 17.11 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.25 -5.39 4.57 56.52 0.26 -5.13 16 23 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.07 0.96 6.69 -51.93 -0.35 0.62 16 26 H 0.19 1.69 8.06 -52.49 -0.42 1.26 16 27 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16 28 H 0.05 0.61 8.03 -51.93 -0.42 0.19 16 29 H 0.08 1.21 4.59 -51.93 -0.24 0.97 16 30 H 0.05 0.87 5.41 -51.90 -0.28 0.59 16 31 H 0.01 0.26 6.78 -51.93 -0.35 -0.10 16 32 H 0.09 1.85 6.14 -51.93 -0.32 1.53 16 33 H 0.03 0.54 5.95 -51.93 -0.31 0.23 16 34 H 0.06 1.23 4.20 -51.93 -0.22 1.01 16 35 H 0.06 1.21 7.17 -51.93 -0.37 0.84 16 36 H 0.05 1.10 6.39 -51.93 -0.33 0.77 16 37 H 0.05 1.03 2.52 -51.93 -0.13 0.90 16 38 H 0.03 0.58 6.28 -51.92 -0.33 0.25 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 290.77 15.07 4.38 4.38 Total: -1.00 -29.57 290.77 -6.32 -35.90 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.18 Total: 1.87 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 0.98 Total: -15.18 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: -0.35 Total: -43.84 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -3.85 Total: 17.11 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.29 Total: -0.24 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.57 -6.32 -35.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259975050.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.915 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds