Wall clock time and date at job start Mon Mar 30 2020 07:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31781 * 122.75173 * 2 1 4 4 C 1.29027 * 117.12526 * 180.33403 * 3 2 1 5 5 S 1.70981 * 110.16550 * 359.70777 * 4 3 2 6 6 C 1.33635 * 122.74566 * 179.79072 * 2 1 3 7 7 C 1.50701 * 126.04374 * 359.97438 * 6 2 1 8 8 H 1.09001 * 109.46431 * 4.13840 * 7 6 2 9 9 C 1.52994 * 109.47181 * 244.14437 * 7 6 2 10 10 N 1.46897 * 109.47042 * 124.13765 * 7 6 2 11 11 C 1.46900 * 111.00481 * 326.32849 * 10 7 6 12 12 C 1.46910 * 110.99789 * 202.37180 * 10 7 6 13 13 C 1.53000 * 109.47189 * 303.47237 * 12 10 7 14 14 C 1.52996 * 109.46830 * 63.47123 * 12 10 7 15 15 C 1.50700 * 109.46990 * 183.46767 * 12 10 7 16 16 H 1.08004 * 119.99863 * 359.67496 * 15 12 10 17 17 C 1.37875 * 119.99853 * 179.66736 * 15 12 10 18 18 N 1.31514 * 120.00180 * 191.82172 * 17 15 12 19 19 Si 1.86796 * 119.99980 * 11.82788 * 17 15 12 20 20 H 1.48500 * 109.47617 * 89.96425 * 19 17 15 21 21 H 1.48503 * 109.47430 * 209.97016 * 19 17 15 22 22 H 1.48507 * 109.47042 * 329.96728 * 19 17 15 23 23 H 1.08992 * 109.47078 * 270.20878 * 1 2 3 24 24 H 1.09004 * 109.46994 * 30.20700 * 1 2 3 25 25 H 1.09004 * 109.47079 * 150.20366 * 1 2 3 26 26 H 1.07992 * 124.91787 * 179.67802 * 4 3 2 27 27 H 1.09010 * 109.46893 * 283.74003 * 9 7 6 28 28 H 1.09003 * 109.47473 * 43.73943 * 9 7 6 29 29 H 1.08999 * 109.47585 * 163.74501 * 9 7 6 30 30 H 1.09001 * 109.46889 * 67.53032 * 11 10 7 31 31 H 1.08999 * 109.46993 * 307.53180 * 11 10 7 32 32 H 1.08992 * 109.47106 * 187.53263 * 11 10 7 33 33 H 1.08994 * 109.47056 * 75.61213 * 13 12 10 34 34 H 1.08998 * 109.46865 * 195.61855 * 13 12 10 35 35 H 1.09005 * 109.46728 * 315.61604 * 13 12 10 36 36 H 1.08995 * 109.47342 * 54.39405 * 14 12 10 37 37 H 1.08997 * 109.47198 * 174.39809 * 14 12 10 38 38 H 1.09007 * 109.47160 * 294.39840 * 14 12 10 39 39 H 0.96996 * 120.00118 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2200 1.1083 0.0000 4 6 3.5040 0.9818 -0.0067 5 16 3.9333 -0.6732 -0.0058 6 6 2.2299 -1.1240 0.0041 7 6 1.6847 -2.5289 0.0098 8 1 0.5976 -2.4969 -0.0641 9 6 2.0871 -3.2269 1.3104 10 7 2.2317 -3.2710 -1.1339 11 6 2.4291 -2.3863 -2.2899 12 6 1.3711 -4.4093 -1.4830 13 6 1.1989 -5.3125 -0.2600 14 6 0.0026 -3.8947 -1.9336 15 6 2.0059 -5.1943 -2.6018 16 1 2.9512 -4.8762 -3.0161 17 6 1.3799 -6.3188 -3.0965 18 7 2.0285 -7.1323 -3.9010 19 14 -0.3896 -6.6867 -2.6243 20 1 -1.3062 -6.0485 -3.6029 21 1 -0.6075 -8.1557 -2.6270 22 1 -0.6619 -6.1484 -1.2673 23 1 -0.3633 0.0037 1.0276 24 1 -0.3633 0.8882 -0.5171 25 1 -0.3633 -0.8918 -0.5107 26 1 4.2060 1.8025 -0.0125 27 1 3.1364 -3.5174 1.2572 28 1 1.9407 -2.5457 2.1487 29 1 1.4711 -4.1149 1.4519 30 1 3.2229 -1.6725 -2.0697 31 1 1.5042 -1.8484 -2.4979 32 1 2.7067 -2.9816 -3.1597 33 1 0.5045 -4.8478 0.4399 34 1 0.8054 -6.2790 -0.5746 35 1 2.1644 -5.4539 0.2259 36 1 0.1332 -3.1741 -2.7409 37 1 -0.6017 -4.7303 -2.2866 38 1 -0.4988 -3.4128 -1.0941 39 1 1.5880 -7.9231 -4.2493 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259975050.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:24 Heat of formation + Delta-G solvation = 63.917967 kcal Electronic energy + Delta-G solvation = -19781.578631 eV Core-core repulsion = 17044.973603 eV Total energy + Delta-G solvation = -2736.605029 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.18528 -39.83261 -35.54328 -33.64297 -32.35013 -31.83643 -28.48605 -27.76512 -26.84564 -25.97613 -25.68891 -23.16382 -20.78771 -19.80908 -18.64460 -17.96826 -17.80951 -16.54304 -16.33128 -15.69919 -15.47556 -15.12842 -14.79826 -14.49840 -14.41675 -14.12079 -13.82955 -13.70687 -13.53544 -13.35234 -13.23213 -12.86116 -12.56680 -12.46211 -12.24786 -12.11146 -12.07150 -11.73901 -11.53615 -10.88485 -10.74680 -10.59123 -10.44694 -9.99925 -9.60963 -8.92393 -8.25647 -6.24807 -0.18957 0.51043 0.93590 1.33469 1.37059 1.47118 1.83842 2.34790 3.07258 3.21686 3.37290 3.78123 4.18117 4.25388 4.31625 4.36402 4.41792 4.50312 4.53927 4.60650 4.72044 4.73908 4.80759 4.86132 4.90206 4.95381 4.98019 5.07995 5.14057 5.19900 5.24741 5.35822 5.43722 5.58342 5.82064 6.11291 6.38599 6.74441 6.78723 6.81175 7.39554 8.91100 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.030875 B = 0.006432 C = 0.006124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.678845 B = 4352.157982 C = 4571.099365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.045 3.955 3 N -0.494 5.494 4 C 0.012 3.988 5 S 0.150 5.850 6 C -0.218 4.218 7 C 0.147 3.853 8 H 0.070 0.930 9 C -0.148 4.148 10 N -0.521 5.521 11 C 0.037 3.963 12 C 0.209 3.791 13 C -0.141 4.141 14 C -0.180 4.180 15 C -0.494 4.494 16 H 0.038 0.962 17 C 0.016 3.984 18 N -0.947 5.947 19 Si 0.929 3.071 20 H -0.290 1.290 21 H -0.311 1.311 22 H -0.205 1.205 23 H 0.088 0.912 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.230 0.770 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.017 0.983 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.036 0.964 38 H 0.065 0.935 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.651 14.079 11.603 18.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 N -0.209 5.209 4 C -0.286 4.286 5 S 0.405 5.595 6 C -0.340 4.340 7 C 0.037 3.963 8 H 0.088 0.912 9 C -0.205 4.205 10 N -0.245 5.245 11 C -0.112 4.112 12 C 0.119 3.881 13 C -0.198 4.198 14 C -0.239 4.239 15 C -0.532 4.532 16 H 0.056 0.944 17 C -0.181 4.181 18 N -0.587 5.587 19 Si 0.759 3.241 20 H -0.218 1.218 21 H -0.241 1.241 22 H -0.129 1.129 23 H 0.107 0.893 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.246 0.754 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.410 13.791 11.664 18.067 hybrid contribution -2.013 -0.244 -0.988 2.255 sum -2.422 13.546 10.677 17.417 Atomic orbital electron populations 1.20416 0.86385 1.03244 1.03673 1.20498 0.99051 0.86192 1.02907 1.66250 1.06045 1.31643 1.16924 1.28893 0.95285 1.01407 1.02990 1.84221 1.06493 1.02177 1.66637 1.25748 0.96208 0.99944 1.12063 1.20223 0.97315 0.85596 0.93138 0.91235 1.22272 1.02671 1.01144 0.94426 1.62390 1.48215 1.08433 1.05425 1.22321 0.99041 0.95734 0.94070 1.18910 0.87694 0.88325 0.93157 1.22584 1.00917 0.98929 0.97414 1.22866 0.99779 1.00334 1.00895 1.21046 1.06200 1.08951 1.17043 0.94425 1.25716 1.01796 0.95331 0.95225 1.70081 1.38404 1.13999 1.36251 0.86571 0.80880 0.75016 0.81652 1.21771 1.24055 1.12850 0.89336 0.90449 0.91000 0.75423 0.92515 0.91546 0.90079 0.91695 0.96453 0.93035 0.91753 0.94037 0.92259 0.93365 0.94519 0.91636 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 9.94 71.24 0.71 -1.04 16 2 C 0.05 1.23 6.74 41.52 0.28 1.51 16 3 N -0.49 -13.19 10.53 -191.55 -2.02 -15.20 16 4 C 0.01 0.25 12.23 130.65 1.60 1.85 16 5 S 0.15 3.72 21.32 -56.49 -1.20 2.51 16 6 C -0.22 -6.15 3.59 24.64 0.09 -6.06 16 7 C 0.15 4.49 2.11 44.17 0.09 4.58 16 8 H 0.07 2.07 4.00 -2.39 -0.01 2.06 16 9 C -0.15 -4.03 8.20 71.98 0.59 -3.44 16 10 N -0.52 -19.85 4.50 -856.12 -3.85 -23.71 16 11 C 0.04 1.42 7.71 127.69 0.98 2.41 16 12 C 0.21 8.91 0.43 2.78 0.00 8.91 16 13 C -0.14 -5.48 5.83 71.98 0.42 -5.06 16 14 C -0.18 -7.08 7.17 71.98 0.52 -6.57 16 15 C -0.49 -26.95 7.84 25.60 0.20 -26.75 16 16 H 0.04 2.34 6.96 -2.91 -0.02 2.32 16 17 C 0.02 0.92 5.31 84.65 0.45 1.37 16 18 N -0.95 -58.68 13.96 21.45 0.30 -58.39 16 19 Si 0.93 43.09 22.68 68.60 1.56 44.64 16 20 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 21 H -0.31 -14.82 7.11 99.48 0.71 -14.12 16 22 H -0.21 -8.16 4.57 99.48 0.45 -7.70 16 23 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.07 1.64 6.69 -2.39 -0.02 1.62 16 26 H 0.23 3.06 8.06 -2.91 -0.02 3.04 16 27 H 0.06 1.66 8.14 -2.38 -0.02 1.65 16 28 H 0.07 1.54 8.03 -2.39 -0.02 1.52 16 29 H 0.08 2.16 4.59 -2.39 -0.01 2.15 16 30 H 0.06 2.25 5.41 -2.40 -0.01 2.24 16 31 H 0.02 0.63 6.78 -2.39 -0.02 0.62 16 32 H 0.05 2.30 6.14 -2.39 -0.01 2.29 16 33 H 0.06 2.06 5.95 -2.39 -0.01 2.04 16 34 H 0.04 1.72 4.20 -2.39 -0.01 1.71 16 35 H 0.06 2.29 7.17 -2.38 -0.02 2.27 16 36 H 0.05 1.91 6.39 -2.39 -0.02 1.90 16 37 H 0.04 1.51 2.52 -2.39 -0.01 1.51 16 38 H 0.06 2.12 6.28 -2.38 -0.01 2.11 16 39 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -65.53 290.77 1.53 -64.00 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.82 Total: 14.43 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: 5.93 Total: -28.29 kcal Atomic # 7 Polarization: -91.73 SS G_CDS: -5.57 Total: -97.29 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.56 Total: 44.64 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.20 Total: 2.51 kcal Total: -65.53 1.53 -64.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259975050.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.922 kcal (2) G-P(sol) polarization free energy of solvation -65.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds