Wall clock time and date at job start Mon Mar 30 2020 07:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31781 * 122.75274 * 2 1 4 4 C 1.29023 * 117.12501 * 179.97438 * 3 2 1 5 5 S 1.70979 * 110.16737 * 359.73263 * 4 3 2 6 6 C 1.33644 * 122.74633 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.03745 * 359.97438 * 6 2 1 8 8 H 1.09000 * 109.47684 * 347.41241 * 7 6 2 9 9 C 1.53005 * 109.46952 * 107.40967 * 7 6 2 10 10 N 1.46896 * 109.47323 * 227.40472 * 7 6 2 11 11 C 1.46898 * 111.00109 * 276.38500 * 10 7 6 12 12 C 1.46905 * 110.99963 * 152.42935 * 10 7 6 13 13 C 1.52992 * 109.47259 * 294.05915 * 12 10 7 14 14 C 1.53007 * 109.46784 * 54.06003 * 12 10 7 15 15 C 1.50702 * 109.47249 * 174.05681 * 12 10 7 16 16 H 1.07998 * 119.99993 * 239.46164 * 15 12 10 17 17 C 1.37876 * 120.00052 * 59.45976 * 15 12 10 18 18 N 1.31509 * 120.00112 * 179.58799 * 17 15 12 19 19 Si 1.86800 * 119.99873 * 359.58820 * 17 15 12 20 20 H 1.48491 * 109.47173 * 90.30162 * 19 17 15 21 21 H 1.48501 * 109.47014 * 210.30787 * 19 17 15 22 22 H 1.48502 * 109.47252 * 330.30434 * 19 17 15 23 23 H 1.09004 * 109.46862 * 270.00170 * 1 2 3 24 24 H 1.08994 * 109.46952 * 29.99192 * 1 2 3 25 25 H 1.08993 * 109.47436 * 149.99780 * 1 2 3 26 26 H 1.07995 * 124.91787 * 180.02562 * 4 3 2 27 27 H 1.08995 * 109.47116 * 178.36261 * 9 7 6 28 28 H 1.09002 * 109.46874 * 298.36208 * 9 7 6 29 29 H 1.09000 * 109.47452 * 58.35386 * 9 7 6 30 30 H 1.08997 * 109.47218 * 57.34632 * 11 10 7 31 31 H 1.09001 * 109.46790 * 177.34404 * 11 10 7 32 32 H 1.08998 * 109.47304 * 297.34189 * 11 10 7 33 33 H 1.09003 * 109.47472 * 66.65882 * 13 12 10 34 34 H 1.08999 * 109.47284 * 186.65785 * 13 12 10 35 35 H 1.09002 * 109.46976 * 306.65487 * 13 12 10 36 36 H 1.08994 * 109.47455 * 50.97397 * 14 12 10 37 37 H 1.08996 * 109.46771 * 170.97784 * 14 12 10 38 38 H 1.08997 * 109.46787 * 290.96980 * 14 12 10 39 39 H 0.97002 * 119.99937 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9818 0.0005 5 16 3.9332 -0.6733 0.0086 6 6 2.2299 -1.1240 -0.0005 7 6 1.6845 -2.5289 -0.0006 8 1 0.6182 -2.5048 0.2238 9 6 1.9018 -3.1602 -1.3773 10 7 2.3815 -3.3248 1.0185 11 6 3.6504 -3.8514 0.4983 12 6 1.5252 -4.4102 1.5153 13 6 0.3329 -3.8157 2.2672 14 6 1.0203 -5.2423 0.3347 15 6 2.3187 -5.2898 2.4468 16 1 2.4424 -6.3393 2.2242 17 6 2.8869 -4.7546 3.5834 18 7 3.5725 -5.5238 4.4006 19 14 2.6827 -2.9369 3.9626 20 1 1.4633 -2.7370 4.7860 21 1 3.8702 -2.4509 4.7102 22 1 2.5525 -2.1779 2.6929 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5137 25 1 -0.3634 -0.8899 -0.5138 26 1 4.2060 1.8024 0.0010 27 1 1.5337 -4.1861 -1.3687 28 1 1.3608 -2.5863 -2.1296 29 1 2.9658 -3.1578 -1.6143 30 1 4.2746 -3.0250 0.1584 31 1 4.1680 -4.3970 1.2873 32 1 3.4501 -4.5228 -0.3366 33 1 -0.3058 -3.2764 1.5676 34 1 -0.2376 -4.6175 2.7359 35 1 0.6924 -3.1294 3.0340 36 1 1.8633 -5.5325 -0.2923 37 1 0.5202 -6.1361 0.7078 38 1 0.3175 -4.6511 -0.2523 39 1 3.9725 -5.1472 5.2000 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259975064.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:27 Heat of formation + Delta-G solvation = 76.322533 kcal Electronic energy + Delta-G solvation = -20076.357365 eV Core-core repulsion = 17340.290239 eV Total energy + Delta-G solvation = -2736.067126 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.79758 -38.58892 -33.74717 -31.83997 -31.04922 -29.36403 -27.66191 -26.39966 -25.33161 -24.67709 -24.12805 -21.30561 -18.91701 -18.48003 -17.44666 -16.55679 -15.65505 -14.99043 -14.76559 -14.26718 -14.08476 -13.76849 -13.29239 -13.10634 -12.78199 -12.41310 -12.36993 -12.25693 -12.07198 -11.84586 -11.43194 -11.38897 -11.22916 -10.95511 -10.71846 -10.49190 -10.11272 -10.07715 -9.85036 -9.43627 -9.30164 -9.05251 -8.83976 -8.50150 -8.37346 -6.96887 -6.05580 -4.12333 1.05337 1.72040 2.13616 3.05858 3.47253 3.61459 3.91365 4.46809 4.65213 4.75325 5.14803 5.33741 5.34740 5.39967 5.54391 5.60157 5.76805 5.89121 5.92717 5.98317 6.05857 6.08781 6.18699 6.22770 6.26374 6.30114 6.46601 6.49748 6.52458 6.68279 6.71423 6.87832 7.06413 7.26582 7.59530 7.96715 7.99569 8.17891 8.55781 8.93596 9.59682 11.03885 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020804 B = 0.009046 C = 0.008204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.566950 B = 3094.402352 C = 3412.288195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.035 3.965 3 N -0.469 5.469 4 C -0.018 4.018 5 S 0.139 5.861 6 C -0.166 4.166 7 C 0.139 3.861 8 H 0.097 0.903 9 C -0.191 4.191 10 N -0.517 5.517 11 C 0.032 3.968 12 C 0.200 3.800 13 C -0.136 4.136 14 C -0.161 4.161 15 C -0.513 4.513 16 H 0.072 0.928 17 C 0.088 3.912 18 N -0.897 5.897 19 Si 0.854 3.146 20 H -0.298 1.298 21 H -0.313 1.313 22 H -0.183 1.183 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.190 0.810 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.091 0.909 32 H 0.024 0.976 33 H 0.028 0.972 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.037 0.963 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.478 8.734 -11.028 14.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 N -0.183 5.183 4 C -0.315 4.315 5 S 0.393 5.607 6 C -0.288 4.288 7 C 0.027 3.973 8 H 0.115 0.885 9 C -0.250 4.250 10 N -0.241 5.241 11 C -0.116 4.116 12 C 0.113 3.887 13 C -0.194 4.194 14 C -0.220 4.220 15 C -0.551 4.551 16 H 0.090 0.910 17 C -0.117 4.117 18 N -0.534 5.534 19 Si 0.684 3.316 20 H -0.226 1.226 21 H -0.242 1.242 22 H -0.104 1.104 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.207 0.793 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.110 0.890 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.505 9.077 -10.475 13.942 hybrid contribution -0.894 0.496 -0.051 1.024 sum -2.399 9.573 -10.527 14.429 Atomic orbital electron populations 1.20279 0.87654 1.02575 1.02722 1.20082 0.97951 0.86328 1.05274 1.66131 1.05212 1.31770 1.15163 1.28236 0.95373 1.01282 1.06607 1.84096 1.08110 1.01465 1.67014 1.25951 0.94575 1.00486 1.07826 1.20180 0.98748 0.86776 0.91558 0.88530 1.22919 1.02381 1.02644 0.97042 1.63304 1.05052 1.24955 1.30810 1.22319 0.92040 0.97345 0.99869 1.19108 0.90507 0.87059 0.92048 1.22130 0.97773 0.99988 0.99463 1.22555 0.99661 1.00575 0.99190 1.20723 1.33546 0.95644 1.05220 0.90995 1.24967 0.93261 0.98326 0.95121 1.69939 1.34090 1.36378 1.12955 0.87582 0.75220 0.87853 0.80994 1.22625 1.24205 1.10436 0.90965 0.91193 0.91013 0.79311 0.89775 0.93242 0.92223 0.94379 0.89020 0.95747 0.95347 0.92487 0.93273 0.93066 0.92958 0.94449 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 9.82 36.01 0.35 -0.62 16 2 C 0.04 0.57 6.74 -84.22 -0.57 0.00 16 3 N -0.47 -7.67 10.53 -11.90 -0.13 -7.80 16 4 C -0.02 -0.25 12.23 51.58 0.63 0.38 16 5 S 0.14 2.12 20.56 -107.50 -2.21 -0.09 16 6 C -0.17 -2.76 5.46 -35.92 -0.20 -2.95 16 7 C 0.14 2.30 1.88 -68.87 -0.13 2.17 16 8 H 0.10 1.58 4.15 -51.93 -0.22 1.37 16 9 C -0.19 -2.76 7.51 37.16 0.28 -2.48 16 10 N -0.52 -10.13 1.02 -221.95 -0.23 -10.36 16 11 C 0.03 0.62 7.50 60.06 0.45 1.07 16 12 C 0.20 4.20 0.28 -132.75 -0.04 4.16 16 13 C -0.14 -2.78 7.77 37.15 0.29 -2.49 16 14 C -0.16 -2.93 6.59 37.16 0.24 -2.68 16 15 C -0.51 -13.32 6.97 -34.44 -0.24 -13.56 16 16 H 0.07 2.06 7.99 -52.49 -0.42 1.64 16 17 C 0.09 2.43 5.01 -17.82 -0.09 2.34 16 18 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 19 Si 0.85 21.43 23.76 -169.99 -4.04 17.39 16 20 H -0.30 -7.65 6.93 56.52 0.39 -7.26 16 21 H -0.31 -8.27 7.11 56.52 0.40 -7.87 16 22 H -0.18 -4.27 5.11 56.52 0.29 -3.98 16 23 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.85 6.98 -51.93 -0.36 0.49 16 26 H 0.19 2.01 8.06 -52.49 -0.42 1.59 16 27 H 0.08 1.21 4.09 -51.93 -0.21 1.00 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.86 6.56 -51.93 -0.34 0.52 16 30 H 0.04 0.66 5.30 -51.60 -0.27 0.39 16 31 H 0.09 2.05 6.46 -51.93 -0.34 1.72 16 32 H 0.02 0.43 5.00 -51.93 -0.26 0.17 16 33 H 0.03 0.49 6.43 -51.93 -0.33 0.15 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.05 1.09 3.57 -51.93 -0.19 0.90 16 36 H 0.05 0.91 5.45 -51.93 -0.28 0.63 16 37 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 38 H 0.04 0.59 6.08 -51.93 -0.32 0.27 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 291.83 15.07 4.40 4.40 Total: -1.00 -30.02 291.83 -5.77 -35.79 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.33 Total: 1.40 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 0.99 Total: -14.67 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.42 Total: -44.22 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.04 Total: 17.39 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.21 Total: -0.09 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.02 -5.77 -35.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259975064.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.115 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds