Wall clock time and date at job start Mon Mar 30 2020 07:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31781 * 122.75274 * 2 1 4 4 C 1.29023 * 117.12501 * 179.97438 * 3 2 1 5 5 S 1.70979 * 110.16737 * 359.73263 * 4 3 2 6 6 C 1.33644 * 122.74633 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.03745 * 359.97438 * 6 2 1 8 8 H 1.09000 * 109.47684 * 347.41241 * 7 6 2 9 9 C 1.53005 * 109.46952 * 107.40967 * 7 6 2 10 10 N 1.46896 * 109.47323 * 227.40472 * 7 6 2 11 11 C 1.46898 * 111.00109 * 276.38500 * 10 7 6 12 12 C 1.46905 * 110.99963 * 152.42935 * 10 7 6 13 13 C 1.52992 * 109.47259 * 294.05915 * 12 10 7 14 14 C 1.53007 * 109.46784 * 54.06003 * 12 10 7 15 15 C 1.50702 * 109.47249 * 174.05681 * 12 10 7 16 16 H 1.07998 * 119.99993 * 239.46164 * 15 12 10 17 17 C 1.37876 * 120.00052 * 59.45976 * 15 12 10 18 18 N 1.31509 * 120.00112 * 179.58799 * 17 15 12 19 19 Si 1.86800 * 119.99873 * 359.58820 * 17 15 12 20 20 H 1.48491 * 109.47173 * 90.30162 * 19 17 15 21 21 H 1.48501 * 109.47014 * 210.30787 * 19 17 15 22 22 H 1.48502 * 109.47252 * 330.30434 * 19 17 15 23 23 H 1.09004 * 109.46862 * 270.00170 * 1 2 3 24 24 H 1.08994 * 109.46952 * 29.99192 * 1 2 3 25 25 H 1.08993 * 109.47436 * 149.99780 * 1 2 3 26 26 H 1.07995 * 124.91787 * 180.02562 * 4 3 2 27 27 H 1.08995 * 109.47116 * 178.36261 * 9 7 6 28 28 H 1.09002 * 109.46874 * 298.36208 * 9 7 6 29 29 H 1.09000 * 109.47452 * 58.35386 * 9 7 6 30 30 H 1.08997 * 109.47218 * 57.34632 * 11 10 7 31 31 H 1.09001 * 109.46790 * 177.34404 * 11 10 7 32 32 H 1.08998 * 109.47304 * 297.34189 * 11 10 7 33 33 H 1.09003 * 109.47472 * 66.65882 * 13 12 10 34 34 H 1.08999 * 109.47284 * 186.65785 * 13 12 10 35 35 H 1.09002 * 109.46976 * 306.65487 * 13 12 10 36 36 H 1.08994 * 109.47455 * 50.97397 * 14 12 10 37 37 H 1.08996 * 109.46771 * 170.97784 * 14 12 10 38 38 H 1.08997 * 109.46787 * 290.96980 * 14 12 10 39 39 H 0.97002 * 119.99937 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9818 0.0005 5 16 3.9332 -0.6733 0.0086 6 6 2.2299 -1.1240 -0.0005 7 6 1.6845 -2.5289 -0.0006 8 1 0.6182 -2.5048 0.2238 9 6 1.9018 -3.1602 -1.3773 10 7 2.3815 -3.3248 1.0185 11 6 3.6504 -3.8514 0.4983 12 6 1.5252 -4.4102 1.5153 13 6 0.3329 -3.8157 2.2672 14 6 1.0203 -5.2423 0.3347 15 6 2.3187 -5.2898 2.4468 16 1 2.4424 -6.3393 2.2242 17 6 2.8869 -4.7546 3.5834 18 7 3.5725 -5.5238 4.4006 19 14 2.6827 -2.9369 3.9626 20 1 1.4633 -2.7370 4.7860 21 1 3.8702 -2.4509 4.7102 22 1 2.5525 -2.1779 2.6929 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5137 25 1 -0.3634 -0.8899 -0.5138 26 1 4.2060 1.8024 0.0010 27 1 1.5337 -4.1861 -1.3687 28 1 1.3608 -2.5863 -2.1296 29 1 2.9658 -3.1578 -1.6143 30 1 4.2746 -3.0250 0.1584 31 1 4.1680 -4.3970 1.2873 32 1 3.4501 -4.5228 -0.3366 33 1 -0.3058 -3.2764 1.5676 34 1 -0.2376 -4.6175 2.7359 35 1 0.6924 -3.1294 3.0340 36 1 1.8633 -5.5325 -0.2923 37 1 0.5202 -6.1361 0.7078 38 1 0.3175 -4.6511 -0.2523 39 1 3.9725 -5.1472 5.2000 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259975064.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:27 Heat of formation + Delta-G solvation = 57.306327 kcal Electronic energy + Delta-G solvation = -20077.181970 eV Core-core repulsion = 17340.290239 eV Total energy + Delta-G solvation = -2736.891731 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.05291 -40.01211 -35.36859 -33.61501 -32.45422 -30.69851 -28.98887 -27.73206 -27.09830 -26.20359 -25.41341 -22.65918 -20.62131 -19.66082 -18.83622 -18.16531 -17.15016 -16.67610 -16.06221 -15.78879 -15.48602 -15.19515 -14.75510 -14.51720 -14.38846 -13.93368 -13.60819 -13.46358 -13.34026 -13.19321 -12.94330 -12.92648 -12.53024 -12.44841 -12.31308 -11.97455 -11.87292 -11.82159 -11.34211 -11.32779 -10.84972 -10.61993 -10.44442 -10.06978 -9.53578 -8.53845 -8.22716 -6.28400 -0.10157 0.57610 0.98055 1.42789 1.54891 1.86621 1.93404 2.56136 3.07150 3.42601 3.50743 3.92483 4.13880 4.32046 4.38685 4.45306 4.49745 4.55248 4.57496 4.74075 4.79780 4.81646 4.86726 4.91905 4.94150 4.98566 5.05476 5.11208 5.14656 5.26691 5.36823 5.44197 5.51268 5.60147 5.78786 6.11966 6.53246 6.65375 6.84947 6.88411 7.46448 8.90847 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020804 B = 0.009046 C = 0.008204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.566950 B = 3094.402352 C = 3412.288195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.032 3.968 3 N -0.493 5.493 4 C -0.002 4.002 5 S 0.128 5.872 6 C -0.192 4.192 7 C 0.143 3.857 8 H 0.105 0.895 9 C -0.185 4.185 10 N -0.531 5.531 11 C 0.040 3.960 12 C 0.199 3.801 13 C -0.136 4.136 14 C -0.154 4.154 15 C -0.496 4.496 16 H 0.033 0.967 17 C 0.040 3.960 18 N -0.950 5.950 19 Si 0.904 3.096 20 H -0.306 1.306 21 H -0.336 1.336 22 H -0.151 1.151 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.224 0.776 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.037 0.963 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.031 0.969 36 H 0.051 0.949 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.821 10.876 -13.364 17.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 N -0.207 5.207 4 C -0.299 4.299 5 S 0.382 5.618 6 C -0.314 4.314 7 C 0.032 3.968 8 H 0.123 0.877 9 C -0.244 4.244 10 N -0.256 5.256 11 C -0.108 4.108 12 C 0.111 3.889 13 C -0.193 4.193 14 C -0.213 4.213 15 C -0.535 4.535 16 H 0.051 0.949 17 C -0.159 4.159 18 N -0.590 5.590 19 Si 0.734 3.266 20 H -0.235 1.235 21 H -0.267 1.267 22 H -0.071 1.071 23 H 0.091 0.909 24 H 0.098 0.902 25 H 0.106 0.894 26 H 0.240 0.760 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.871 11.219 -12.848 17.297 hybrid contribution -0.460 -0.156 0.589 0.763 sum -3.330 11.062 -12.259 16.845 Atomic orbital electron populations 1.20393 0.85981 1.03940 1.03103 1.20521 0.99251 0.86111 1.04056 1.66219 1.05967 1.31999 1.16529 1.28832 0.95376 1.01537 1.04142 1.84117 1.07918 1.02596 1.67206 1.25930 0.95097 1.00434 1.09933 1.20190 0.98617 0.86369 0.91622 0.87746 1.22835 1.02627 1.02741 0.96185 1.62948 1.05146 1.24407 1.33061 1.22190 0.91928 0.97922 0.98776 1.18997 0.90187 0.87391 0.92329 1.22081 0.97827 0.99761 0.99679 1.22468 1.00311 1.00201 0.98291 1.20994 1.32257 0.94700 1.05499 0.94889 1.25590 0.93522 1.01309 0.95456 1.70077 1.36905 1.37980 1.14016 0.86926 0.73475 0.84803 0.81352 1.23502 1.26721 1.07130 0.90947 0.90186 0.89399 0.76012 0.89677 0.91181 0.92479 0.92571 0.93080 0.94462 0.91457 0.93091 0.95081 0.92972 0.93862 0.91059 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.70 9.82 71.24 0.70 -1.00 16 2 C 0.03 0.93 6.74 41.52 0.28 1.21 16 3 N -0.49 -14.46 10.53 -191.55 -2.02 -16.48 16 4 C 0.00 -0.04 12.23 130.66 1.60 1.55 16 5 S 0.13 3.53 20.56 -56.49 -1.16 2.37 16 6 C -0.19 -5.71 5.46 24.64 0.13 -5.57 16 7 C 0.14 4.20 1.88 44.17 0.08 4.28 16 8 H 0.10 2.90 4.15 -2.39 -0.01 2.89 16 9 C -0.19 -4.60 7.51 71.98 0.54 -4.05 16 10 N -0.53 -19.65 1.02 -856.12 -0.87 -20.52 16 11 C 0.04 1.48 7.50 127.69 0.96 2.44 16 12 C 0.20 8.02 0.28 2.78 0.00 8.02 16 13 C -0.14 -5.21 7.77 71.98 0.56 -4.66 16 14 C -0.15 -5.21 6.59 71.98 0.47 -4.73 16 15 C -0.50 -26.20 6.97 25.60 0.18 -26.02 16 16 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 17 C 0.04 2.26 5.01 84.66 0.42 2.69 16 18 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 19 Si 0.90 45.08 23.76 68.60 1.63 46.71 16 20 H -0.31 -15.50 6.93 99.48 0.69 -14.81 16 21 H -0.34 -17.92 7.11 99.48 0.71 -17.21 16 22 H -0.15 -6.71 5.11 99.48 0.51 -6.20 16 23 H 0.07 1.65 8.14 -2.38 -0.02 1.64 16 24 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.09 1.68 6.98 -2.39 -0.02 1.66 16 26 H 0.22 3.82 8.06 -2.91 -0.02 3.80 16 27 H 0.08 2.09 4.09 -2.39 -0.01 2.08 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.45 6.56 -2.39 -0.02 1.43 16 30 H 0.06 1.86 5.30 -2.60 -0.01 1.85 16 31 H 0.05 2.31 6.46 -2.39 -0.02 2.29 16 32 H 0.04 1.27 5.00 -2.39 -0.01 1.25 16 33 H 0.07 2.05 6.43 -2.39 -0.02 2.03 16 34 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.03 1.30 3.57 -2.39 -0.01 1.29 16 36 H 0.05 1.74 5.45 -2.39 -0.01 1.73 16 37 H 0.04 1.52 8.12 -2.39 -0.02 1.50 16 38 H 0.07 1.93 6.08 -2.39 -0.01 1.92 16 39 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -66.54 291.83 4.65 -61.89 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.85 Total: 10.93 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 5.93 Total: -25.85 kcal Atomic # 7 Polarization: -93.46 SS G_CDS: -2.59 Total: -96.05 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.63 Total: 46.71 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -1.16 Total: 2.37 kcal Total: -66.54 4.65 -61.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259975064.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.193 kcal (2) G-P(sol) polarization free energy of solvation -66.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds