Wall clock time and date at job start Mon Mar 30 2020 06:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46899 * 110.99994 * 2 1 4 4 C 1.39760 * 111.00159 * 123.94987 * 2 1 3 5 5 C 1.38878 * 120.07372 * 300.00248 * 4 2 1 6 6 C 1.38119 * 119.93139 * 179.71545 * 5 4 2 7 7 C 1.50710 * 119.94899 * 180.27634 * 6 5 4 8 8 H 1.08999 * 109.47196 * 20.00643 * 7 6 5 9 9 N 1.46903 * 109.46565 * 140.00287 * 7 6 5 10 10 C 1.52998 * 109.47244 * 260.00541 * 7 6 5 11 11 C 1.50700 * 109.46798 * 175.00248 * 10 7 6 12 12 H 1.07999 * 120.00307 * 0.02562 * 11 10 7 13 13 C 1.37886 * 119.99608 * 179.97438 * 11 10 7 14 14 N 1.31516 * 119.99993 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99564 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46954 * 90.00319 * 15 13 11 17 17 H 1.48506 * 109.46724 * 209.99926 * 15 13 11 18 18 H 1.48497 * 109.47498 * 330.00081 * 15 13 11 19 19 C 1.38283 * 120.09810 * 0.26159 * 6 5 4 20 20 C 1.38278 * 120.15822 * 0.04171 * 19 6 5 21 21 C 1.38209 * 120.05532 * 359.97438 * 20 19 6 22 22 Cl 1.73599 * 120.04451 * 179.97438 * 21 20 19 23 23 H 1.09004 * 109.47675 * 296.04619 * 1 2 3 24 24 H 1.08999 * 109.47257 * 56.05188 * 1 2 3 25 25 H 1.09002 * 109.46758 * 176.04679 * 1 2 3 26 26 H 1.09000 * 109.47524 * 183.95355 * 3 2 1 27 27 H 1.09007 * 109.47222 * 303.94969 * 3 2 1 28 28 H 1.09001 * 109.47660 * 63.94950 * 3 2 1 29 29 H 1.08002 * 120.03727 * 359.97438 * 5 4 2 30 30 H 1.00894 * 111.00177 * 296.04686 * 9 7 6 31 31 H 1.00897 * 110.99935 * 60.00828 * 9 7 6 32 32 H 1.09007 * 109.47072 * 295.00041 * 10 7 6 33 33 H 1.08994 * 109.47334 * 55.00192 * 10 7 6 34 34 H 0.96998 * 119.99855 * 179.97438 * 14 13 11 35 35 H 1.08000 * 119.92414 * 180.02562 * 19 6 5 36 36 H 1.07996 * 119.97093 * 179.97438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9698 -0.7287 1.0823 5 6 1.6582 -0.3484 2.3812 6 6 2.1500 -1.0741 3.4485 7 6 1.8070 -0.6656 4.8580 8 1 0.9164 -0.0371 4.8476 9 7 1.5506 -1.8649 5.6667 10 6 2.9757 0.1161 5.4612 11 6 2.5867 0.6296 6.8235 12 1 1.6043 0.4191 7.2197 13 6 3.4855 1.3674 7.5647 14 7 4.6820 1.6232 7.0824 15 14 3.0030 2.0045 9.2530 16 1 3.3606 0.9965 10.2832 17 1 3.7258 3.2721 9.5289 18 1 1.5391 2.2514 9.2893 19 6 2.9564 -2.1752 3.2257 20 6 3.2742 -2.5535 1.9342 21 6 2.7859 -1.8318 0.8614 22 17 3.1857 -2.3066 -0.7598 23 1 -0.3634 0.4512 0.9233 24 1 -0.3634 0.5739 -0.8525 25 1 -0.3633 -1.0253 -0.0709 26 1 3.0827 1.3433 -0.0709 27 1 1.5898 1.9163 -0.8525 28 1 1.7043 1.8724 0.9232 29 1 1.0285 0.5114 2.5565 30 1 0.7426 -2.3643 5.3267 31 1 2.3619 -2.4641 5.6920 32 1 3.8420 -0.5391 5.5536 33 1 3.2236 0.9568 4.8132 34 1 5.3140 2.1425 7.6036 35 1 3.3390 -2.7409 4.0623 36 1 3.9046 -3.4137 1.7637 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260216806.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:21 Heat of formation + Delta-G solvation = 20.246723 kcal Electronic energy + Delta-G solvation = -18165.923349 eV Core-core repulsion = 15289.547793 eV Total energy + Delta-G solvation = -2876.375557 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.00030 -37.18548 -36.35559 -34.74683 -32.44311 -30.36934 -29.40030 -28.26741 -27.64263 -24.63265 -24.38133 -22.16996 -21.44292 -19.35859 -17.20391 -16.31326 -16.00565 -15.69216 -15.11381 -15.01467 -14.41197 -14.15574 -13.98124 -13.53972 -13.13545 -12.85914 -12.39169 -12.35713 -12.19207 -11.76582 -11.73072 -11.52878 -11.33019 -11.10336 -10.80457 -10.59144 -10.53312 -10.26726 -9.61564 -9.13925 -8.76002 -8.66215 -8.33743 -8.22758 -7.95904 -5.95123 -3.94452 1.28831 1.37249 2.36657 3.36180 3.42072 3.45944 3.71649 3.78064 4.51098 4.90970 5.02742 5.15534 5.23528 5.26580 5.35669 5.39815 5.42456 5.47802 5.54596 5.68441 5.76154 5.86888 5.89249 6.12711 6.29509 6.36325 6.62457 6.70394 6.77786 6.87195 7.29182 7.47490 7.64041 7.91035 8.04268 8.10393 8.47353 9.11650 9.67899 11.16543 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.026425 B = 0.004603 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.335553 B = 6081.824085 C = 6388.999400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.504 5.504 3 C 0.027 3.973 4 C 0.092 3.908 5 C -0.132 4.132 6 C -0.082 4.082 7 C 0.131 3.869 8 H 0.078 0.922 9 N -0.820 5.820 10 C 0.038 3.962 11 C -0.496 4.496 12 H 0.062 0.938 13 C 0.051 3.949 14 N -0.902 5.902 15 Si 0.893 3.107 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.275 1.275 19 C -0.110 4.110 20 C -0.106 4.106 21 C -0.025 4.025 22 Cl -0.068 7.068 23 H 0.033 0.967 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.126 0.874 30 H 0.323 0.677 31 H 0.335 0.665 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.259 0.741 35 H 0.129 0.871 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.979 -6.271 -14.540 16.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.225 5.225 3 C -0.119 4.119 4 C -0.003 4.003 5 C -0.153 4.153 6 C -0.086 4.086 7 C 0.019 3.981 8 H 0.096 0.904 9 N -0.347 5.347 10 C 0.001 3.999 11 C -0.534 4.534 12 H 0.081 0.919 13 C -0.149 4.149 14 N -0.542 5.542 15 Si 0.722 3.278 16 H -0.208 1.208 17 H -0.215 1.215 18 H -0.200 1.200 19 C -0.128 4.128 20 C -0.125 4.125 21 C -0.053 4.053 22 Cl -0.040 7.040 23 H 0.051 0.949 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.054 0.946 29 H 0.144 0.856 30 H 0.134 0.866 31 H 0.148 0.852 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.068 0.932 35 H 0.147 0.853 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.746 -5.913 -14.463 16.649 hybrid contribution -0.104 0.265 0.586 0.651 sum -5.851 -5.649 -13.878 16.085 Atomic orbital electron populations 1.22438 0.85953 1.02534 1.00917 1.59635 1.08373 1.14290 1.40214 1.22461 1.01241 0.87224 1.00998 1.18502 0.97808 0.94631 0.89321 1.21470 1.01705 1.00451 0.91644 1.21420 0.94671 0.93737 0.98732 1.20864 1.01462 0.92276 0.83516 0.90429 1.58843 1.08420 1.10140 1.57293 1.19131 0.90934 0.94134 0.95725 1.21140 1.00097 1.31291 1.00906 0.91937 1.25024 0.95086 0.96609 0.98140 1.69970 1.05959 1.40447 1.37833 0.86573 0.78448 0.78094 0.84713 1.20795 1.21547 1.19971 1.20968 0.98189 0.97578 0.96111 1.20952 1.00317 0.99948 0.91264 1.20716 1.01434 0.97181 0.85919 1.98329 1.92679 1.91166 1.21785 0.94877 0.90936 0.91293 0.91032 0.90939 0.94638 0.85583 0.86644 0.85164 0.96420 0.96277 0.93187 0.85283 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.34 60.06 0.56 0.87 16 2 N -0.50 -6.50 4.39 -186.82 -0.82 -7.31 16 3 C 0.03 0.32 9.38 60.06 0.56 0.89 16 4 C 0.09 1.35 4.73 -83.73 -0.40 0.95 16 5 C -0.13 -2.06 8.19 -39.39 -0.32 -2.38 16 6 C -0.08 -1.37 4.94 -104.64 -0.52 -1.89 16 7 C 0.13 2.51 2.93 -68.86 -0.20 2.31 16 8 H 0.08 1.53 8.00 -51.93 -0.42 1.12 16 9 N -0.82 -14.36 8.77 -5.65 -0.05 -14.41 16 10 C 0.04 0.94 4.60 -27.88 -0.13 0.81 16 11 C -0.50 -13.71 8.84 -34.44 -0.30 -14.01 16 12 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 13 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 14 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 15 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 C -0.11 -1.66 9.29 -39.55 -0.37 -2.03 16 20 C -0.11 -1.47 9.82 -39.58 -0.39 -1.86 16 21 C -0.02 -0.36 6.34 -39.32 -0.25 -0.61 16 22 Cl -0.07 -0.91 28.44 -51.86 -1.47 -2.38 16 23 H 0.03 0.35 7.13 -51.93 -0.37 -0.02 16 24 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 28 H 0.03 0.43 7.34 -51.93 -0.38 0.05 16 29 H 0.13 1.90 7.00 -52.49 -0.37 1.53 16 30 H 0.32 4.73 9.06 -39.30 -0.36 4.38 16 31 H 0.33 5.55 7.34 -39.29 -0.29 5.26 16 32 H 0.02 0.47 8.14 -51.92 -0.42 0.04 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.13 1.82 6.65 -52.49 -0.35 1.47 16 36 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 315.05 15.07 4.75 4.75 Total: -1.00 -30.20 315.05 -8.75 -38.95 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.03 Total: 5.41 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -1.85 Total: -15.59 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.13 Total: -47.95 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.47 Total: -2.38 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.20 -8.75 -38.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260216806.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.200 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds