Wall clock time and date at job start Mon Mar 30 2020 06:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46899 * 110.99994 * 2 1 4 4 C 1.39760 * 111.00159 * 123.94987 * 2 1 3 5 5 C 1.38878 * 120.07372 * 300.00248 * 4 2 1 6 6 C 1.38119 * 119.93139 * 179.71545 * 5 4 2 7 7 C 1.50710 * 119.94899 * 180.27634 * 6 5 4 8 8 H 1.08999 * 109.47196 * 20.00643 * 7 6 5 9 9 N 1.46903 * 109.46565 * 140.00287 * 7 6 5 10 10 C 1.52998 * 109.47244 * 260.00541 * 7 6 5 11 11 C 1.50700 * 109.46798 * 175.00248 * 10 7 6 12 12 H 1.07999 * 120.00307 * 0.02562 * 11 10 7 13 13 C 1.37886 * 119.99608 * 179.97438 * 11 10 7 14 14 N 1.31516 * 119.99993 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99564 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46954 * 90.00319 * 15 13 11 17 17 H 1.48506 * 109.46724 * 209.99926 * 15 13 11 18 18 H 1.48497 * 109.47498 * 330.00081 * 15 13 11 19 19 C 1.38283 * 120.09810 * 0.26159 * 6 5 4 20 20 C 1.38278 * 120.15822 * 0.04171 * 19 6 5 21 21 C 1.38209 * 120.05532 * 359.97438 * 20 19 6 22 22 Cl 1.73599 * 120.04451 * 179.97438 * 21 20 19 23 23 H 1.09004 * 109.47675 * 296.04619 * 1 2 3 24 24 H 1.08999 * 109.47257 * 56.05188 * 1 2 3 25 25 H 1.09002 * 109.46758 * 176.04679 * 1 2 3 26 26 H 1.09000 * 109.47524 * 183.95355 * 3 2 1 27 27 H 1.09007 * 109.47222 * 303.94969 * 3 2 1 28 28 H 1.09001 * 109.47660 * 63.94950 * 3 2 1 29 29 H 1.08002 * 120.03727 * 359.97438 * 5 4 2 30 30 H 1.00894 * 111.00177 * 296.04686 * 9 7 6 31 31 H 1.00897 * 110.99935 * 60.00828 * 9 7 6 32 32 H 1.09007 * 109.47072 * 295.00041 * 10 7 6 33 33 H 1.08994 * 109.47334 * 55.00192 * 10 7 6 34 34 H 0.96998 * 119.99855 * 179.97438 * 14 13 11 35 35 H 1.08000 * 119.92414 * 180.02562 * 19 6 5 36 36 H 1.07996 * 119.97093 * 179.97438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9698 -0.7287 1.0823 5 6 1.6582 -0.3484 2.3812 6 6 2.1500 -1.0741 3.4485 7 6 1.8070 -0.6656 4.8580 8 1 0.9164 -0.0371 4.8476 9 7 1.5506 -1.8649 5.6667 10 6 2.9757 0.1161 5.4612 11 6 2.5867 0.6296 6.8235 12 1 1.6043 0.4191 7.2197 13 6 3.4855 1.3674 7.5647 14 7 4.6820 1.6232 7.0824 15 14 3.0030 2.0045 9.2530 16 1 3.3606 0.9965 10.2832 17 1 3.7258 3.2721 9.5289 18 1 1.5391 2.2514 9.2893 19 6 2.9564 -2.1752 3.2257 20 6 3.2742 -2.5535 1.9342 21 6 2.7859 -1.8318 0.8614 22 17 3.1857 -2.3066 -0.7598 23 1 -0.3634 0.4512 0.9233 24 1 -0.3634 0.5739 -0.8525 25 1 -0.3633 -1.0253 -0.0709 26 1 3.0827 1.3433 -0.0709 27 1 1.5898 1.9163 -0.8525 28 1 1.7043 1.8724 0.9232 29 1 1.0285 0.5114 2.5565 30 1 0.7426 -2.3643 5.3267 31 1 2.3619 -2.4641 5.6920 32 1 3.8420 -0.5391 5.5536 33 1 3.2236 0.9568 4.8132 34 1 5.3140 2.1425 7.6036 35 1 3.3390 -2.7409 4.0623 36 1 3.9046 -3.4137 1.7637 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260216806.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:20 Heat of formation + Delta-G solvation = 1.133079 kcal Electronic energy + Delta-G solvation = -18166.752179 eV Core-core repulsion = 15289.547793 eV Total energy + Delta-G solvation = -2877.204387 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.15968 -38.40689 -37.45822 -36.18225 -34.46482 -31.57290 -30.57881 -30.18205 -28.53774 -26.23224 -25.63065 -23.67248 -22.73283 -20.74573 -18.66096 -18.06134 -17.31721 -16.84792 -16.59632 -16.20192 -16.06896 -15.50334 -15.14412 -14.60446 -14.57995 -14.30261 -14.02803 -13.32588 -13.27882 -13.25398 -13.03381 -12.78550 -12.66279 -12.57318 -12.56256 -12.27651 -12.08882 -11.65939 -11.39709 -11.23430 -10.52494 -9.90694 -9.76509 -9.50851 -9.27585 -8.12901 -6.19391 0.10493 0.19343 1.24316 1.42711 1.43615 1.54446 2.44827 2.53765 2.79453 3.20576 3.75580 3.82299 3.89554 4.08051 4.25532 4.28573 4.37500 4.41271 4.58919 4.60236 4.66008 4.75915 4.92922 4.93594 4.94748 5.12480 5.16755 5.42961 5.44728 5.60329 5.70982 5.84491 5.85719 6.20792 6.27993 6.48247 6.80325 6.94858 7.47576 8.98819 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.026425 B = 0.004603 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.335553 B = 6081.824085 C = 6388.999400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.510 5.510 3 C 0.028 3.972 4 C 0.092 3.908 5 C -0.138 4.138 6 C -0.098 4.098 7 C 0.147 3.853 8 H 0.070 0.930 9 N -0.827 5.827 10 C 0.047 3.953 11 C -0.507 4.507 12 H 0.061 0.939 13 C -0.004 4.004 14 N -0.939 5.939 15 Si 0.960 3.040 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.266 1.266 19 C -0.114 4.114 20 C -0.101 4.101 21 C -0.032 4.032 22 Cl -0.055 7.055 23 H 0.030 0.970 24 H 0.094 0.906 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.097 0.903 28 H 0.026 0.974 29 H 0.125 0.875 30 H 0.342 0.658 31 H 0.340 0.660 32 H -0.006 1.006 33 H -0.012 1.012 34 H 0.260 0.740 35 H 0.137 0.863 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.870 -6.852 -15.123 17.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.231 5.231 3 C -0.119 4.119 4 C -0.003 4.003 5 C -0.159 4.159 6 C -0.101 4.101 7 C 0.035 3.965 8 H 0.088 0.912 9 N -0.356 5.356 10 C 0.009 3.991 11 C -0.545 4.545 12 H 0.079 0.921 13 C -0.200 4.200 14 N -0.580 5.580 15 Si 0.786 3.214 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.190 1.190 19 C -0.132 4.132 20 C -0.120 4.120 21 C -0.060 4.060 22 Cl -0.026 7.026 23 H 0.049 0.951 24 H 0.112 0.888 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.045 0.955 29 H 0.143 0.857 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.012 0.988 33 H 0.007 0.993 34 H 0.068 0.932 35 H 0.155 0.845 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.663 -6.510 -15.058 17.706 hybrid contribution 0.175 0.422 0.666 0.808 sum -6.488 -6.087 -14.392 16.920 Atomic orbital electron populations 1.22510 0.84575 1.02982 1.01786 1.59746 1.09630 1.14575 1.39109 1.22495 1.00767 0.86939 1.01688 1.18624 0.97501 0.94772 0.89379 1.21497 1.01946 1.00376 0.92033 1.21151 0.96460 0.95137 0.97374 1.20349 0.98648 0.92404 0.85077 0.91174 1.58716 1.09562 1.10010 1.57356 1.18922 0.92303 0.93273 0.94569 1.21492 0.99912 1.31030 1.02073 0.92073 1.25887 0.95037 0.96990 1.02131 1.70100 1.07092 1.41401 1.39453 0.85519 0.78485 0.77482 0.79942 1.20163 1.21242 1.18988 1.21077 0.97866 0.97216 0.97086 1.21190 0.99931 1.00364 0.90492 1.20920 1.01140 0.97139 0.86767 1.98332 1.92527 1.90989 1.20793 0.95107 0.88759 0.91279 0.92049 0.88442 0.95488 0.85673 0.84513 0.84554 0.98755 0.99323 0.93161 0.84520 0.82641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.34 127.69 1.19 1.74 16 2 N -0.51 -12.38 4.39 -744.96 -3.27 -15.65 16 3 C 0.03 0.62 9.38 127.69 1.20 1.82 16 4 C 0.09 2.60 4.73 38.21 0.18 2.78 16 5 C -0.14 -4.27 8.19 22.39 0.18 -4.09 16 6 C -0.10 -3.26 4.94 -19.88 -0.10 -3.36 16 7 C 0.15 5.73 2.93 44.17 0.13 5.86 16 8 H 0.07 2.80 8.00 -2.39 -0.02 2.78 16 9 N -0.83 -28.55 8.77 -171.79 -1.51 -30.05 16 10 C 0.05 2.38 4.60 29.85 0.14 2.52 16 11 C -0.51 -28.39 8.84 25.60 0.23 -28.17 16 12 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 13 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 14 N -0.94 -57.19 13.29 21.45 0.28 -56.91 16 15 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 17 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 C -0.11 -3.36 9.29 22.29 0.21 -3.15 16 20 C -0.10 -2.65 9.82 22.27 0.22 -2.43 16 21 C -0.03 -0.88 6.34 22.44 0.14 -0.73 16 22 Cl -0.06 -1.36 28.44 -2.72 -0.08 -1.44 16 23 H 0.03 0.62 7.13 -2.38 -0.02 0.60 16 24 H 0.09 1.43 8.12 -2.39 -0.02 1.42 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.10 1.67 8.12 -2.38 -0.02 1.65 16 28 H 0.03 0.64 7.34 -2.39 -0.02 0.63 16 29 H 0.13 3.81 7.00 -2.91 -0.02 3.79 16 30 H 0.34 9.63 9.06 -89.70 -0.81 8.82 16 31 H 0.34 11.11 7.34 -89.70 -0.66 10.45 16 32 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 33 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 34 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 35 H 0.14 3.75 6.65 -2.91 -0.02 3.73 16 36 H 0.16 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -64.44 315.05 1.26 -63.18 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -0.38 Total: 20.92 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: 4.18 Total: -26.98 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -4.49 Total: -102.61 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -64.44 1.26 -63.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260216806.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.309 kcal (2) G-P(sol) polarization free energy of solvation -64.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds