Wall clock time and date at job start Mon Mar 30 2020 06:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99595 * 2 1 4 4 H 1.48497 * 109.47254 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46945 * 239.99908 * 3 2 1 6 6 H 1.48497 * 109.46853 * 120.00032 * 3 2 1 7 7 C 1.37871 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00194 * 155.55989 * 7 2 1 9 9 C 1.50701 * 119.99926 * 335.56731 * 7 2 1 10 10 F 1.39893 * 109.47818 * 55.85467 * 9 7 2 11 11 C 1.53002 * 109.46990 * 175.85877 * 9 7 2 12 12 C 1.54247 * 108.89261 * 309.07462 * 11 9 7 13 13 C 1.50556 * 108.48153 * 159.18146 * 12 11 9 14 14 C 1.54065 * 112.41444 * 94.26575 * 13 12 11 15 15 C 1.54067 * 112.81956 * 318.28449 * 14 13 12 16 16 C 1.50475 * 112.49151 * 318.27822 * 15 14 13 17 17 C 1.45546 * 108.89499 * 186.28850 * 11 9 7 18 18 C 1.53004 * 109.46875 * 295.84983 * 9 7 2 19 19 F 1.39898 * 109.46551 * 53.52627 * 18 9 7 20 20 F 1.39899 * 109.47011 * 173.52082 * 18 9 7 21 21 F 1.39898 * 109.47459 * 293.52762 * 18 9 7 22 22 H 0.97002 * 119.99633 * 174.54583 * 1 2 3 23 23 H 1.08997 * 108.87642 * 67.68424 * 11 9 7 24 24 H 1.08999 * 109.63069 * 278.97760 * 12 11 9 25 25 H 1.08990 * 109.62766 * 39.55859 * 12 11 9 26 26 H 1.08999 * 108.92304 * 333.51370 * 13 12 11 27 27 H 1.08995 * 108.91891 * 215.01981 * 13 12 11 28 28 H 1.08999 * 108.81316 * 197.41618 * 14 13 12 29 29 H 1.09003 * 108.72584 * 79.08142 * 14 13 12 30 30 H 1.09003 * 108.87688 * 197.51132 * 15 14 13 31 31 H 1.08995 * 108.80103 * 79.00201 * 15 14 13 32 32 H 1.08999 * 109.62914 * 334.44789 * 16 15 14 33 33 H 1.09001 * 109.62994 * 213.86281 * 16 15 14 34 34 H 1.09000 * 108.89748 * 303.44022 * 17 11 9 35 35 H 1.09003 * 108.89754 * 61.93063 * 17 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6965 -1.2125 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0120 -1.2360 -0.3864 9 6 1.3523 -2.4404 0.5409 10 9 0.1471 -2.6657 -0.1326 11 6 2.2846 -3.6355 0.3317 12 6 2.7368 -3.6640 -1.1427 13 6 4.0015 -4.4754 -1.2383 14 6 3.7283 -5.9494 -1.5935 15 6 2.5168 -6.5310 -0.8400 16 6 2.4775 -6.1049 0.6026 17 6 1.5857 -4.8519 0.7193 18 6 1.0763 -2.2646 2.0355 19 9 0.3468 -1.0884 2.2397 20 9 0.3401 -3.3574 2.5055 21 9 2.2895 -2.1870 2.7279 22 1 -0.4850 -0.8363 -0.0799 23 1 3.1614 -3.5143 0.9677 24 1 1.9596 -4.1208 -1.7553 25 1 2.9281 -2.6477 -1.4867 26 1 4.5213 -4.4338 -0.2812 27 1 4.6429 -4.0409 -2.0050 28 1 4.6112 -6.5396 -1.3482 29 1 3.5438 -6.0227 -2.6653 30 1 2.5625 -7.6191 -0.8852 31 1 1.6035 -6.1960 -1.3317 32 1 3.4860 -5.8695 0.9425 33 1 2.0613 -6.9084 1.2105 34 1 1.2499 -4.7525 1.7515 35 1 0.7140 -4.9781 0.0772 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260336238.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:13 Heat of formation + Delta-G solvation = -220.445610 kcal Electronic energy + Delta-G solvation = -23232.105165 eV Core-core repulsion = 19342.806539 eV Total energy + Delta-G solvation = -3889.298626 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.15848 -46.84846 -46.50179 -46.12390 -38.50007 -33.85104 -32.36976 -31.68230 -28.34367 -25.13581 -24.15805 -23.75114 -21.23971 -19.66658 -19.01523 -17.92559 -17.43012 -17.18567 -16.73763 -15.53864 -14.68051 -14.35876 -13.82367 -13.80002 -13.67353 -13.32391 -13.27852 -12.97479 -12.94712 -12.77355 -12.62872 -12.58091 -12.47133 -11.76662 -11.69305 -11.45794 -11.28975 -10.84131 -10.77966 -10.37865 -10.27878 -10.15668 -10.07627 -9.95440 -9.74027 -9.30971 -9.02060 -8.30809 -6.60882 -4.51959 3.33686 3.39819 3.57417 3.84821 4.35857 4.78985 4.89370 4.97508 5.05129 5.13914 5.25176 5.38656 5.51550 5.57858 5.62605 5.68848 5.86618 5.87163 6.01009 6.13441 6.27848 6.41012 6.44761 6.45618 6.53784 6.54834 6.66822 6.75896 6.83234 7.07245 7.12743 7.45308 8.17726 8.52447 9.26155 10.70068 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.022765 B = 0.009231 C = 0.007697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.686331 B = 3032.370503 C = 3636.830800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.050 3.950 3 Si 1.058 2.942 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.657 4.657 8 H 0.082 0.918 9 C 0.206 3.794 10 F -0.209 7.209 11 C -0.088 4.088 12 C -0.103 4.103 13 C -0.117 4.117 14 C -0.114 4.114 15 C -0.118 4.118 16 C -0.111 4.111 17 C -0.144 4.144 18 C 0.415 3.585 19 F -0.169 7.169 20 F -0.205 7.205 21 F -0.187 7.187 22 H 0.292 0.708 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.092 0.908 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.314 -8.583 -0.100 10.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.165 4.165 3 Si 0.884 3.116 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.692 4.692 8 H 0.100 0.900 9 C 0.186 3.814 10 F -0.190 7.190 11 C -0.107 4.107 12 C -0.141 4.141 13 C -0.154 4.154 14 C -0.152 4.152 15 C -0.155 4.155 16 C -0.148 4.148 17 C -0.181 4.181 18 C 0.360 3.640 19 F -0.150 7.150 20 F -0.187 7.187 21 F -0.168 7.168 22 H 0.106 0.894 23 H 0.096 0.904 24 H 0.077 0.923 25 H 0.110 0.890 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.014 -6.970 -0.020 8.586 hybrid contribution -0.016 -1.664 0.320 1.695 sum 4.998 -8.634 0.300 9.981 Atomic orbital electron populations 1.70613 1.07639 1.33907 1.35974 1.25928 0.95896 1.02892 0.91830 0.83741 0.75466 0.75286 0.77128 1.20480 1.20913 1.20749 1.21811 1.03884 0.92114 1.51360 0.89964 1.19624 0.80240 0.98396 0.83121 1.92736 1.49538 1.95673 1.81028 1.20413 0.98500 0.92975 0.98774 1.21406 0.96210 1.01716 0.94728 1.21377 0.98472 0.94323 1.01237 1.21915 0.97568 0.96256 0.99472 1.21344 0.98922 0.99108 0.96129 1.21255 1.00133 0.97258 0.96163 1.21038 0.99103 0.94524 1.03482 1.22808 0.73379 0.73301 0.94527 1.93208 1.77627 1.48135 1.96016 1.92959 1.78760 1.55583 1.91360 1.93039 1.45758 1.96119 1.81901 0.89381 0.90376 0.92347 0.88989 0.92399 0.92701 0.93005 0.92767 0.93089 0.91984 0.91924 0.92508 0.90649 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.60 12.09 55.43 0.67 -23.93 16 2 C 0.05 1.35 4.26 -17.82 -0.08 1.27 16 3 Si 1.06 23.88 29.97 -169.99 -5.09 18.78 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.66 -17.01 6.93 -34.44 -0.24 -17.25 16 8 H 0.08 2.06 6.53 -52.48 -0.34 1.72 16 9 C 0.21 4.95 0.31 -91.77 -0.03 4.93 16 10 F -0.21 -5.38 13.24 2.25 0.03 -5.35 16 11 C -0.09 -1.75 1.14 -93.48 -0.11 -1.85 16 12 C -0.10 -1.90 4.73 -27.30 -0.13 -2.03 16 13 C -0.12 -1.74 5.32 -27.40 -0.15 -1.88 16 14 C -0.11 -1.48 5.85 -25.62 -0.15 -1.63 16 15 C -0.12 -1.57 5.32 -27.44 -0.15 -1.72 16 16 C -0.11 -1.60 5.61 -27.34 -0.15 -1.76 16 17 C -0.14 -2.59 4.01 -29.60 -0.12 -2.71 16 18 C 0.41 10.06 2.40 37.16 0.09 10.15 16 19 F -0.17 -4.52 14.12 2.25 0.03 -4.49 16 20 F -0.20 -4.60 14.12 2.25 0.03 -4.57 16 21 F -0.19 -4.32 16.25 2.25 0.04 -4.28 16 22 H 0.29 8.58 5.72 -40.82 -0.23 8.35 16 23 H 0.08 1.55 6.70 -51.93 -0.35 1.21 16 24 H 0.06 1.08 6.96 -51.93 -0.36 0.72 16 25 H 0.09 1.88 5.62 -51.93 -0.29 1.59 16 26 H 0.06 0.86 6.63 -51.93 -0.34 0.52 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.89 6.62 -51.93 -0.34 0.55 16 32 H 0.06 0.89 6.98 -51.93 -0.36 0.53 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.42 5.04 -51.93 -0.26 1.16 16 35 H 0.06 1.23 6.85 -51.93 -0.36 0.87 16 LS Contribution 271.33 15.07 4.09 4.09 Total: -1.00 -27.55 271.33 -5.56 -33.11 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -4.15 Total: 1.11 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -1.20 Total: -14.48 kcal Atomic # 7 Polarization: -24.60 SS G_CDS: 0.67 Total: -23.93 kcal Atomic # 9 Polarization: -18.82 SS G_CDS: 0.13 Total: -18.69 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -5.09 Total: 18.78 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.55 -5.56 -33.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260336238.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.332 kcal (2) G-P(sol) polarization free energy of solvation -27.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds