Wall clock time and date at job start Mon Mar 30 2020 06:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99595 * 2 1 4 4 H 1.48497 * 109.47254 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46945 * 239.99908 * 3 2 1 6 6 H 1.48497 * 109.46853 * 120.00032 * 3 2 1 7 7 C 1.37871 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00194 * 155.55989 * 7 2 1 9 9 C 1.50701 * 119.99926 * 335.56731 * 7 2 1 10 10 F 1.39893 * 109.47818 * 55.85467 * 9 7 2 11 11 C 1.53002 * 109.46990 * 175.85877 * 9 7 2 12 12 C 1.54247 * 108.89261 * 309.07462 * 11 9 7 13 13 C 1.50556 * 108.48153 * 159.18146 * 12 11 9 14 14 C 1.54065 * 112.41444 * 94.26575 * 13 12 11 15 15 C 1.54067 * 112.81956 * 318.28449 * 14 13 12 16 16 C 1.50475 * 112.49151 * 318.27822 * 15 14 13 17 17 C 1.45546 * 108.89499 * 186.28850 * 11 9 7 18 18 C 1.53004 * 109.46875 * 295.84983 * 9 7 2 19 19 F 1.39898 * 109.46551 * 53.52627 * 18 9 7 20 20 F 1.39899 * 109.47011 * 173.52082 * 18 9 7 21 21 F 1.39898 * 109.47459 * 293.52762 * 18 9 7 22 22 H 0.97002 * 119.99633 * 174.54583 * 1 2 3 23 23 H 1.08997 * 108.87642 * 67.68424 * 11 9 7 24 24 H 1.08999 * 109.63069 * 278.97760 * 12 11 9 25 25 H 1.08990 * 109.62766 * 39.55859 * 12 11 9 26 26 H 1.08999 * 108.92304 * 333.51370 * 13 12 11 27 27 H 1.08995 * 108.91891 * 215.01981 * 13 12 11 28 28 H 1.08999 * 108.81316 * 197.41618 * 14 13 12 29 29 H 1.09003 * 108.72584 * 79.08142 * 14 13 12 30 30 H 1.09003 * 108.87688 * 197.51132 * 15 14 13 31 31 H 1.08995 * 108.80103 * 79.00201 * 15 14 13 32 32 H 1.08999 * 109.62914 * 334.44789 * 16 15 14 33 33 H 1.09001 * 109.62994 * 213.86281 * 16 15 14 34 34 H 1.09000 * 108.89748 * 303.44022 * 17 11 9 35 35 H 1.09003 * 108.89754 * 61.93063 * 17 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6965 -1.2125 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0120 -1.2360 -0.3864 9 6 1.3523 -2.4404 0.5409 10 9 0.1471 -2.6657 -0.1326 11 6 2.2846 -3.6355 0.3317 12 6 2.7368 -3.6640 -1.1427 13 6 4.0015 -4.4754 -1.2383 14 6 3.7283 -5.9494 -1.5935 15 6 2.5168 -6.5310 -0.8400 16 6 2.4775 -6.1049 0.6026 17 6 1.5857 -4.8519 0.7193 18 6 1.0763 -2.2646 2.0355 19 9 0.3468 -1.0884 2.2397 20 9 0.3401 -3.3574 2.5055 21 9 2.2895 -2.1870 2.7279 22 1 -0.4850 -0.8363 -0.0799 23 1 3.1614 -3.5143 0.9677 24 1 1.9596 -4.1208 -1.7553 25 1 2.9281 -2.6477 -1.4867 26 1 4.5213 -4.4338 -0.2812 27 1 4.6429 -4.0409 -2.0050 28 1 4.6112 -6.5396 -1.3482 29 1 3.5438 -6.0227 -2.6653 30 1 2.5625 -7.6191 -0.8852 31 1 1.6035 -6.1960 -1.3317 32 1 3.4860 -5.8695 0.9425 33 1 2.0613 -6.9084 1.2105 34 1 1.2499 -4.7525 1.7515 35 1 0.7140 -4.9781 0.0772 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260336238.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:13 Heat of formation + Delta-G solvation = -233.672514 kcal Electronic energy + Delta-G solvation = -23232.678727 eV Core-core repulsion = 19342.806539 eV Total energy + Delta-G solvation = -3889.872188 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -51.10782 -48.79415 -48.49270 -48.10819 -39.85893 -35.62664 -34.01006 -32.98995 -30.06852 -26.91944 -25.61597 -25.24657 -22.97524 -21.23024 -20.36920 -19.77192 -19.31602 -19.11751 -18.64598 -17.09000 -16.23260 -15.87903 -15.63297 -15.39237 -15.30257 -15.21361 -15.02327 -14.82985 -14.77430 -14.58779 -14.47722 -14.42491 -13.87797 -13.27679 -13.21120 -12.94601 -12.85854 -12.61381 -12.55102 -11.95271 -11.71529 -11.60977 -11.36314 -11.19066 -11.15064 -10.98391 -10.78357 -10.30644 -8.71955 -6.62340 1.53057 1.58628 1.80024 1.91897 2.49480 2.83770 3.02590 3.21973 3.42125 3.69243 3.72235 4.02562 4.19607 4.25259 4.33481 4.43645 4.47681 4.54667 4.70794 4.85454 4.96728 5.06791 5.09714 5.19999 5.28142 5.33595 5.36985 5.40469 5.45453 5.55547 5.61528 5.66693 6.10109 6.37539 7.21802 8.56840 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.022765 B = 0.009231 C = 0.007697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.686331 B = 3032.370503 C = 3636.830800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.005 3.995 3 Si 1.098 2.902 4 H -0.286 1.286 5 H -0.259 1.259 6 H -0.271 1.271 7 C -0.661 4.661 8 H 0.088 0.912 9 C 0.192 3.808 10 F -0.222 7.222 11 C -0.080 4.080 12 C -0.097 4.097 13 C -0.114 4.114 14 C -0.111 4.111 15 C -0.118 4.118 16 C -0.103 4.103 17 C -0.143 4.143 18 C 0.413 3.587 19 F -0.186 7.186 20 F -0.195 7.195 21 F -0.180 7.180 22 H 0.277 0.723 23 H 0.080 0.920 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.277 -9.853 -0.328 12.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.204 4.204 3 Si 0.918 3.082 4 H -0.211 1.211 5 H -0.183 1.183 6 H -0.196 1.196 7 C -0.696 4.696 8 H 0.106 0.894 9 C 0.173 3.827 10 F -0.203 7.203 11 C -0.099 4.099 12 C -0.134 4.134 13 C -0.151 4.151 14 C -0.149 4.149 15 C -0.156 4.156 16 C -0.141 4.141 17 C -0.180 4.180 18 C 0.358 3.642 19 F -0.168 7.168 20 F -0.177 7.177 21 F -0.161 7.161 22 H 0.090 0.910 23 H 0.098 0.902 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.993 -8.262 -0.251 10.827 hybrid contribution -0.647 -1.310 0.415 1.519 sum 6.346 -9.572 0.164 11.486 Atomic orbital electron populations 1.70729 1.08683 1.32988 1.39095 1.27224 0.95911 1.06369 0.90867 0.83235 0.74745 0.71654 0.78520 1.21114 1.18345 1.19583 1.22115 1.04021 0.92787 1.50703 0.89396 1.19968 0.80348 0.99864 0.82565 1.92698 1.50487 1.95781 1.81345 1.20440 0.97503 0.92005 0.99926 1.21300 0.97889 1.00938 0.93285 1.21330 0.96461 0.95399 1.01915 1.21899 0.98290 0.94773 0.99912 1.21347 0.98467 1.00701 0.95059 1.21233 0.99647 0.95692 0.97492 1.20993 0.99269 0.95561 1.02160 1.22775 0.73527 0.72979 0.94890 1.93173 1.78152 1.49324 1.96135 1.92979 1.78579 1.54859 1.91248 1.93044 1.45221 1.96084 1.81761 0.90975 0.90218 0.93057 0.91546 0.92138 0.91545 0.90730 0.92006 0.90585 0.93570 0.91143 0.90775 0.91854 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.15 12.09 21.45 0.26 -51.89 16 2 C 0.01 0.29 4.26 84.65 0.36 0.66 16 3 Si 1.10 47.70 29.97 68.60 2.06 49.75 16 4 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 7 C -0.66 -34.35 6.93 25.60 0.18 -34.17 16 8 H 0.09 4.38 6.53 -2.91 -0.02 4.36 16 9 C 0.19 9.32 0.31 -11.54 0.00 9.31 16 10 F -0.22 -11.76 13.24 44.97 0.60 -11.16 16 11 C -0.08 -3.13 1.14 -12.65 -0.01 -3.14 16 12 C -0.10 -3.47 4.73 30.23 0.14 -3.33 16 13 C -0.11 -3.10 5.32 30.16 0.16 -2.94 16 14 C -0.11 -2.49 5.85 31.31 0.18 -2.31 16 15 C -0.12 -2.80 5.32 30.14 0.16 -2.64 16 16 C -0.10 -2.71 5.61 30.20 0.17 -2.54 16 17 C -0.14 -4.99 4.01 28.74 0.12 -4.88 16 18 C 0.41 20.14 2.40 71.98 0.17 20.31 16 19 F -0.19 -10.17 14.12 44.97 0.64 -9.53 16 20 F -0.20 -8.78 14.12 44.97 0.63 -8.15 16 21 F -0.18 -8.21 16.25 44.97 0.73 -7.48 16 22 H 0.28 16.85 5.72 -92.71 -0.53 16.32 16 23 H 0.08 3.07 6.70 -2.39 -0.02 3.05 16 24 H 0.05 1.88 6.96 -2.39 -0.02 1.86 16 25 H 0.07 2.71 5.62 -2.39 -0.01 2.69 16 26 H 0.06 1.62 6.63 -2.39 -0.02 1.61 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.24 6.62 -2.39 -0.02 1.23 16 32 H 0.07 1.76 6.98 -2.39 -0.02 1.74 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.06 2.35 5.04 -2.39 -0.01 2.34 16 35 H 0.05 1.91 6.85 -2.39 -0.02 1.89 16 Total: -1.00 -59.35 271.33 7.89 -51.46 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 1.35 Total: 12.65 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 1.62 Total: -25.66 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 0.26 Total: -51.89 kcal Atomic # 9 Polarization: -38.91 SS G_CDS: 2.60 Total: -36.32 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.06 Total: 49.75 kcal Total: -59.35 7.89 -51.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260336238.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.209 kcal (2) G-P(sol) polarization free energy of solvation -59.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds