Wall clock time and date at job start Mon Mar 30 2020 06:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46894 * 111.00353 * 2 1 4 4 C 1.39674 * 111.00013 * 123.95754 * 2 1 3 5 5 C 1.38941 * 120.06710 * 300.02049 * 4 2 1 6 6 C 1.38090 * 119.95222 * 179.97438 * 5 4 2 7 7 C 1.38285 * 120.08633 * 359.97438 * 6 5 4 8 8 C 1.38384 * 120.13543 * 359.79037 * 7 6 5 9 9 Cl 1.73609 * 119.97328 * 180.23068 * 8 7 6 10 10 C 1.38239 * 120.05101 * 0.46048 * 8 7 6 11 11 C 1.50693 * 120.04507 * 179.79030 * 10 8 7 12 12 H 1.09002 * 109.47508 * 13.19222 * 11 10 8 13 13 N 1.46907 * 109.46914 * 133.19124 * 11 10 8 14 14 C 1.53002 * 109.47444 * 253.19049 * 11 10 8 15 15 C 1.50701 * 109.47062 * 175.00092 * 14 11 10 16 16 H 1.07998 * 120.00161 * 0.02562 * 15 14 11 17 17 C 1.37875 * 119.99484 * 180.02562 * 15 14 11 18 18 N 1.31507 * 120.00445 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99605 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47215 * 89.99899 * 19 17 15 21 21 H 1.48503 * 109.46710 * 210.00075 * 19 17 15 22 22 H 1.48504 * 109.46780 * 329.99650 * 19 17 15 23 23 H 1.08997 * 109.46610 * 296.04547 * 1 2 3 24 24 H 1.09003 * 109.46908 * 56.04468 * 1 2 3 25 25 H 1.09004 * 109.47005 * 176.04446 * 1 2 3 26 26 H 1.08999 * 109.47462 * 183.95363 * 3 2 1 27 27 H 1.08994 * 109.47179 * 303.95946 * 3 2 1 28 28 H 1.09010 * 109.47113 * 63.95530 * 3 2 1 29 29 H 1.08001 * 120.02399 * 0.02562 * 5 4 2 30 30 H 1.07999 * 119.95528 * 179.97438 * 6 5 4 31 31 H 1.08003 * 119.92916 * 180.02562 * 7 6 5 32 32 H 1.00898 * 110.99738 * 307.60676 * 13 11 10 33 33 H 1.00896 * 110.99920 * 71.56272 * 13 11 10 34 34 H 1.08998 * 109.47068 * 294.99997 * 14 11 10 35 35 H 1.08999 * 109.46515 * 55.00053 * 14 11 10 36 36 H 0.97003 * 120.00489 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9696 -0.7284 1.0816 5 6 1.6574 -0.3482 2.3810 6 6 2.1531 -1.0704 3.4486 7 6 2.9594 -2.1716 3.2260 8 6 3.2686 -2.5563 1.9331 9 17 4.2763 -3.9431 1.6584 10 6 2.7797 -1.8344 0.8604 11 6 3.1203 -2.2507 -0.5473 12 1 3.5519 -3.2515 -0.5359 13 7 1.9006 -2.2527 -1.3661 14 6 4.1308 -1.2663 -1.1399 15 6 4.5643 -1.7494 -2.4999 16 1 4.1594 -2.6665 -2.9017 17 6 5.4780 -1.0205 -3.2313 18 7 5.9714 0.0959 -2.7419 19 14 6.0149 -1.6189 -4.9175 20 1 5.1111 -1.0570 -5.9531 21 1 7.4069 -1.1733 -5.1807 22 1 5.9538 -3.1021 -4.9589 23 1 -0.3632 0.4512 0.9233 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0253 -0.0709 26 1 3.0829 1.3431 -0.0709 27 1 1.5899 1.9163 -0.8523 28 1 1.7045 1.8723 0.9234 29 1 1.0268 0.5109 2.5560 30 1 1.9109 -0.7747 4.4586 31 1 3.3454 -2.7348 4.0628 32 1 1.1730 -2.7986 -0.9295 33 1 1.5863 -1.3115 -1.5488 34 1 3.6686 -0.2837 -1.2337 35 1 4.9991 -1.1985 -0.4845 36 1 6.6140 0.6090 -3.2566 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260542255.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:11 Heat of formation + Delta-G solvation = 31.546220 kcal Electronic energy + Delta-G solvation = -18981.868434 eV Core-core repulsion = 16105.982860 eV Total energy + Delta-G solvation = -2875.885574 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.12110 -36.85640 -35.72371 -35.10960 -32.30508 -29.94945 -29.56362 -28.13648 -27.28839 -24.78796 -23.91745 -22.01935 -21.13535 -19.61791 -17.02516 -16.30631 -15.79951 -15.30048 -14.88637 -14.57843 -14.52032 -14.16479 -13.97894 -13.34043 -13.13878 -12.48732 -12.25350 -12.22852 -12.08273 -11.65494 -11.53323 -11.28393 -11.11997 -10.98454 -10.85584 -10.50430 -10.42037 -9.89561 -9.48828 -8.94137 -8.54322 -8.46550 -8.26186 -8.16113 -7.48804 -5.81080 -3.77650 1.26577 1.45136 2.44120 3.45116 3.50326 3.55753 3.72561 4.00162 4.63336 4.93510 5.06901 5.14683 5.26550 5.34699 5.50915 5.54255 5.58834 5.65602 5.73171 5.80442 5.92520 6.05135 6.22973 6.29114 6.39031 6.47515 6.66738 6.80215 7.00161 7.07380 7.50475 7.75175 7.97120 8.18908 8.30534 8.65563 8.68149 9.28487 9.83055 11.30854 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.017944 B = 0.007443 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.056381 B = 3761.211944 C = 4668.966593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.497 5.497 3 C 0.030 3.970 4 C 0.100 3.900 5 C -0.146 4.146 6 C -0.116 4.116 7 C -0.115 4.115 8 C -0.029 4.029 9 Cl -0.062 7.062 10 C -0.069 4.069 11 C 0.137 3.863 12 H 0.080 0.920 13 N -0.820 5.820 14 C 0.038 3.962 15 C -0.487 4.487 16 H 0.061 0.939 17 C 0.050 3.950 18 N -0.904 5.904 19 Si 0.889 3.111 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.275 1.275 23 H 0.027 0.973 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.024 0.976 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.308 0.692 33 H 0.356 0.644 34 H 0.032 0.968 35 H 0.011 0.989 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.553 -0.372 12.104 16.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.218 5.218 3 C -0.116 4.116 4 C 0.005 3.995 5 C -0.167 4.167 6 C -0.135 4.135 7 C -0.134 4.134 8 C -0.057 4.057 9 Cl -0.033 7.033 10 C -0.073 4.073 11 C 0.025 3.975 12 H 0.097 0.903 13 N -0.351 5.351 14 C 0.001 3.999 15 C -0.526 4.526 16 H 0.079 0.921 17 C -0.149 4.149 18 N -0.545 5.545 19 Si 0.718 3.282 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.200 1.200 23 H 0.046 0.954 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.042 0.958 29 H 0.137 0.863 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.118 0.882 33 H 0.176 0.824 34 H 0.050 0.950 35 H 0.029 0.971 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.746 -0.901 10.966 14.699 hybrid contribution -0.225 0.599 0.782 1.011 sum -9.971 -0.302 11.748 15.412 Atomic orbital electron populations 1.22519 0.86458 1.02505 1.00787 1.59443 1.07540 1.14673 1.40156 1.22495 1.02588 0.86501 1.00035 1.18492 0.97832 0.94493 0.88644 1.21635 1.01388 1.00398 0.93258 1.20787 0.98510 0.95547 0.98667 1.21011 0.99369 0.97893 0.95144 1.20773 0.98318 0.92488 0.94132 1.98359 1.67464 1.40881 1.96630 1.21351 0.94024 0.92732 0.99149 1.20811 0.92991 1.01156 0.82560 0.90255 1.59120 1.06358 1.20917 1.48704 1.19148 0.91687 0.93868 0.95186 1.21191 1.22235 1.07955 1.01184 0.92066 1.24976 0.96769 0.95248 0.97859 1.69965 1.31471 1.15315 1.37765 0.86634 0.77421 0.79028 0.85093 1.20970 1.21725 1.20032 0.95439 0.90560 0.91342 0.89797 0.90714 0.95778 0.86269 0.85723 0.85404 0.88212 0.82441 0.95025 0.97068 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.84 60.07 0.53 0.82 16 2 N -0.50 -7.59 1.47 -186.86 -0.28 -7.87 16 3 C 0.03 0.45 8.88 60.06 0.53 0.98 16 4 C 0.10 1.60 4.52 -83.79 -0.38 1.22 16 5 C -0.15 -1.98 8.57 -39.38 -0.34 -2.32 16 6 C -0.12 -1.46 10.04 -39.62 -0.40 -1.85 16 7 C -0.12 -1.60 9.83 -39.51 -0.39 -1.99 16 8 C -0.03 -0.49 6.31 -39.53 -0.25 -0.74 16 9 Cl -0.06 -1.04 27.06 -51.86 -1.40 -2.45 16 10 C -0.07 -1.25 4.85 -104.39 -0.51 -1.76 16 11 C 0.14 2.92 2.66 -68.86 -0.18 2.73 16 12 H 0.08 1.79 6.33 -51.93 -0.33 1.46 16 13 N -0.82 -16.24 8.75 -5.65 -0.05 -16.29 16 14 C 0.04 0.99 4.39 -27.88 -0.12 0.87 16 15 C -0.49 -14.03 8.84 -34.44 -0.30 -14.33 16 16 H 0.06 1.78 7.74 -52.49 -0.41 1.38 16 17 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 18 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 19 Si 0.89 22.53 29.54 -169.99 -5.02 17.51 16 20 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H 0.03 0.29 7.12 -51.93 -0.37 -0.08 16 24 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.08 1.51 7.21 -51.93 -0.37 1.14 16 27 H 0.07 1.02 8.12 -51.93 -0.42 0.59 16 28 H 0.02 0.30 7.34 -51.92 -0.38 -0.08 16 29 H 0.12 1.37 7.02 -52.49 -0.37 1.01 16 30 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 31 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 32 H 0.31 5.33 8.94 -39.29 -0.35 4.98 16 33 H 0.36 6.98 5.83 -39.29 -0.23 6.75 16 34 H 0.03 0.85 5.86 -51.93 -0.30 0.54 16 35 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 304.95 15.07 4.60 4.60 Total: -1.00 -30.95 304.95 -8.10 -39.05 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -4.78 Total: 7.11 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -1.90 Total: -14.99 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.41 Total: -50.84 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.40 Total: -2.45 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.95 -8.10 -39.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260542255.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.600 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds