Wall clock time and date at job start Mon Mar 30 2020 06:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 111.00211 * 2 1 4 4 C 1.39676 * 110.99531 * 123.94629 * 2 1 3 5 5 C 1.38938 * 120.07202 * 300.00385 * 4 2 1 6 6 C 1.38089 * 119.95400 * 180.02562 * 5 4 2 7 7 C 1.38285 * 120.08449 * 0.02562 * 6 5 4 8 8 C 1.38376 * 120.13815 * 0.25809 * 7 6 5 9 9 Cl 1.73603 * 119.97679 * 179.70208 * 8 7 6 10 10 C 1.38246 * 120.04839 * 359.44376 * 8 7 6 11 11 C 1.50702 * 120.04292 * 180.30169 * 10 8 7 12 12 H 1.09003 * 109.47135 * 347.23921 * 11 10 8 13 13 N 1.46901 * 109.46913 * 227.24177 * 11 10 8 14 14 C 1.52993 * 109.47164 * 107.24397 * 11 10 8 15 15 C 1.50703 * 109.47264 * 184.99578 * 14 11 10 16 16 H 1.07992 * 119.99780 * 359.97438 * 15 14 11 17 17 C 1.37876 * 120.00125 * 179.97438 * 15 14 11 18 18 N 1.31521 * 120.00129 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00127 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46914 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47499 * 119.99986 * 19 17 15 22 22 H 1.48499 * 109.47103 * 240.00359 * 19 17 15 23 23 H 1.08993 * 109.47612 * 296.05429 * 1 2 3 24 24 H 1.09004 * 109.46265 * 56.05317 * 1 2 3 25 25 H 1.09002 * 109.46980 * 176.04687 * 1 2 3 26 26 H 1.08994 * 109.47219 * 183.94944 * 3 2 1 27 27 H 1.09005 * 109.46682 * 303.94704 * 3 2 1 28 28 H 1.08999 * 109.47532 * 63.94581 * 3 2 1 29 29 H 1.08008 * 120.02060 * 359.97438 * 5 4 2 30 30 H 1.08004 * 119.95393 * 179.97438 * 6 5 4 31 31 H 1.08000 * 119.92835 * 179.97438 * 7 6 5 32 32 H 1.00899 * 111.00127 * 171.10593 * 13 11 10 33 33 H 1.00905 * 111.00313 * 295.06572 * 13 11 10 34 34 H 1.08996 * 109.47561 * 304.99756 * 14 11 10 35 35 H 1.09006 * 109.47042 * 64.99515 * 14 11 10 36 36 H 0.96997 * 120.00361 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9695 -0.7282 1.0818 5 6 1.6576 -0.3477 2.3811 6 6 2.1541 -1.0690 3.4488 7 6 2.9618 -2.1693 3.2264 8 6 3.2795 -2.5480 1.9340 9 17 4.3001 -3.9253 1.6598 10 6 2.7805 -1.8336 0.8608 11 6 3.1211 -2.2502 -0.5469 12 1 3.9350 -2.9749 -0.5244 13 7 3.5359 -1.0717 -1.3195 14 6 1.8924 -2.8834 -1.2028 15 6 2.2653 -3.4104 -2.5645 16 1 3.2773 -3.3040 -2.9261 17 6 1.3145 -4.0284 -3.3487 18 7 0.0819 -4.1576 -2.9085 19 14 1.7769 -4.6823 -5.0362 20 1 3.2143 -4.4133 -5.2944 21 1 1.5302 -6.1458 -5.0847 22 1 0.9537 -4.0069 -6.0714 23 1 -0.3634 0.4513 0.9231 24 1 -0.3632 0.5739 -0.8526 25 1 -0.3633 -1.0252 -0.0708 26 1 3.0828 1.3431 -0.0708 27 1 1.5899 1.9162 -0.8526 28 1 1.7044 1.8724 0.9232 29 1 1.0279 0.5123 2.5560 30 1 1.9120 -0.7730 4.4589 31 1 3.3490 -2.7314 4.0633 32 1 3.9064 -1.3408 -2.2186 33 1 2.7724 -0.4202 -1.4233 34 1 1.5312 -3.7034 -0.5822 35 1 1.1083 -2.1331 -1.3057 36 1 -0.5870 -4.5927 -3.4600 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260542258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:14 Heat of formation + Delta-G solvation = 28.409766 kcal Electronic energy + Delta-G solvation = -18972.149676 eV Core-core repulsion = 16096.128095 eV Total energy + Delta-G solvation = -2876.021581 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.98027 -36.76122 -35.64485 -35.14757 -32.35989 -29.99391 -29.52181 -27.90756 -27.15383 -24.76991 -23.97497 -22.01667 -21.03846 -19.60556 -17.02196 -16.47767 -15.74753 -15.22237 -14.83148 -14.49393 -14.46206 -14.07430 -13.71710 -13.25828 -12.82419 -12.39458 -12.27862 -12.02594 -12.01496 -11.87058 -11.40266 -11.33177 -11.19433 -11.01760 -10.92360 -10.67989 -10.41370 -9.92957 -9.75741 -9.02298 -8.41222 -8.38567 -8.27842 -8.14262 -7.39288 -5.97440 -3.99003 1.38300 1.58825 2.52364 3.31874 3.39804 3.43792 3.85172 4.12589 4.47741 5.02136 5.15324 5.25523 5.36554 5.39181 5.48181 5.58592 5.71621 5.73649 5.78027 6.05469 6.06665 6.19178 6.25738 6.35441 6.48910 6.59531 6.72688 6.98538 7.01135 7.15220 7.61597 7.66804 7.84227 8.02903 8.36232 8.42885 8.73609 9.07607 9.64160 11.13535 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.017913 B = 0.007438 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.725719 B = 3763.781799 C = 4668.775525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.493 5.493 3 C 0.027 3.973 4 C 0.109 3.891 5 C -0.148 4.148 6 C -0.118 4.118 7 C -0.116 4.116 8 C -0.031 4.031 9 Cl -0.066 7.066 10 C -0.016 4.016 11 C 0.130 3.870 12 H 0.077 0.923 13 N -0.845 5.845 14 C 0.005 3.995 15 C -0.514 4.514 16 H 0.054 0.946 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 H 0.024 0.976 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.023 0.977 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.335 0.665 33 H 0.351 0.649 34 H 0.010 0.990 35 H 0.034 0.966 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.824 8.728 10.816 14.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.214 5.214 3 C -0.120 4.120 4 C 0.015 3.985 5 C -0.169 4.169 6 C -0.137 4.137 7 C -0.135 4.135 8 C -0.059 4.059 9 Cl -0.037 7.037 10 C -0.018 4.018 11 C 0.019 3.981 12 H 0.095 0.905 13 N -0.379 5.379 14 C -0.033 4.033 15 C -0.553 4.553 16 H 0.073 0.927 17 C -0.142 4.142 18 N -0.532 5.532 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.212 1.212 23 H 0.042 0.958 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.042 0.958 29 H 0.137 0.863 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.171 0.829 34 H 0.028 0.972 35 H 0.052 0.948 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.399 8.475 10.861 14.190 hybrid contribution -0.917 -0.566 -0.861 1.379 sum 2.482 7.909 10.000 12.989 Atomic orbital electron populations 1.22498 0.85730 1.03625 1.00009 1.59317 1.08287 1.13439 1.40324 1.22505 1.01845 0.87443 1.00158 1.18404 0.97048 0.94660 0.88438 1.21621 1.01328 1.00646 0.93259 1.20757 0.98677 0.95637 0.98614 1.20946 0.99614 0.97940 0.94992 1.20699 0.98625 0.92424 0.94111 1.98348 1.66741 1.41942 1.96660 1.20052 0.93332 0.92021 0.96426 1.20452 0.99127 0.91916 0.86627 0.90536 1.59387 1.40338 1.15585 1.22597 1.19755 0.92746 0.96038 0.94757 1.21202 0.95795 1.37245 1.01017 0.92737 1.24970 0.95027 0.96156 0.98057 1.69981 1.02179 1.43861 1.37211 0.86592 0.78567 0.78615 0.84552 1.19736 1.21166 1.21171 0.95752 0.90924 0.90267 0.90250 0.91058 0.95808 0.86313 0.85785 0.85444 0.85348 0.82949 0.97210 0.94823 0.93237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 8.93 60.07 0.54 0.96 16 2 N -0.49 -7.92 1.55 -186.86 -0.29 -8.21 16 3 C 0.03 0.35 8.51 60.06 0.51 0.86 16 4 C 0.11 1.85 4.51 -83.79 -0.38 1.47 16 5 C -0.15 -2.12 8.57 -39.38 -0.34 -2.46 16 6 C -0.12 -1.55 10.04 -39.62 -0.40 -1.95 16 7 C -0.12 -1.68 9.83 -39.51 -0.39 -2.07 16 8 C -0.03 -0.54 6.31 -39.53 -0.25 -0.79 16 9 Cl -0.07 -1.13 27.05 -51.86 -1.40 -2.54 16 10 C -0.02 -0.31 4.96 -104.38 -0.52 -0.83 16 11 C 0.13 2.81 2.68 -68.87 -0.18 2.63 16 12 H 0.08 1.73 6.31 -51.93 -0.33 1.40 16 13 N -0.84 -16.84 8.98 -5.65 -0.05 -16.89 16 14 C 0.01 0.14 4.44 -27.89 -0.12 0.01 16 15 C -0.51 -14.26 8.62 -34.44 -0.30 -14.56 16 16 H 0.05 1.48 7.16 -52.49 -0.38 1.10 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 19 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H 0.02 0.31 7.12 -51.93 -0.37 -0.06 16 24 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 25 H 0.08 1.41 7.60 -51.93 -0.39 1.02 16 26 H 0.08 1.09 8.02 -51.93 -0.42 0.68 16 27 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 28 H 0.02 0.27 7.34 -51.93 -0.38 -0.11 16 29 H 0.12 1.44 7.02 -52.48 -0.37 1.07 16 30 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 31 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.33 6.82 8.06 -39.29 -0.32 6.51 16 33 H 0.35 6.81 5.18 -39.29 -0.20 6.60 16 34 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.03 0.90 6.34 -51.93 -0.33 0.57 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 303.55 15.07 4.57 4.57 Total: -1.00 -29.98 303.55 -8.11 -38.09 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -4.73 Total: 9.29 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -1.92 Total: -15.14 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.40 Total: -50.92 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.40 Total: -2.54 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.98 -8.11 -38.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260542258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.496 kcal (2) G-P(sol) polarization free energy of solvation -29.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds