Wall clock time and date at job start Mon Mar 30 2020 06:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 111.00211 * 2 1 4 4 C 1.39676 * 110.99531 * 123.94629 * 2 1 3 5 5 C 1.38938 * 120.07202 * 300.00385 * 4 2 1 6 6 C 1.38089 * 119.95400 * 180.02562 * 5 4 2 7 7 C 1.38285 * 120.08449 * 0.02562 * 6 5 4 8 8 C 1.38376 * 120.13815 * 0.25809 * 7 6 5 9 9 Cl 1.73603 * 119.97679 * 179.70208 * 8 7 6 10 10 C 1.38246 * 120.04839 * 359.44376 * 8 7 6 11 11 C 1.50702 * 120.04292 * 180.30169 * 10 8 7 12 12 H 1.09003 * 109.47135 * 347.23921 * 11 10 8 13 13 N 1.46901 * 109.46913 * 227.24177 * 11 10 8 14 14 C 1.52993 * 109.47164 * 107.24397 * 11 10 8 15 15 C 1.50703 * 109.47264 * 184.99578 * 14 11 10 16 16 H 1.07992 * 119.99780 * 359.97438 * 15 14 11 17 17 C 1.37876 * 120.00125 * 179.97438 * 15 14 11 18 18 N 1.31521 * 120.00129 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00127 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46914 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47499 * 119.99986 * 19 17 15 22 22 H 1.48499 * 109.47103 * 240.00359 * 19 17 15 23 23 H 1.08993 * 109.47612 * 296.05429 * 1 2 3 24 24 H 1.09004 * 109.46265 * 56.05317 * 1 2 3 25 25 H 1.09002 * 109.46980 * 176.04687 * 1 2 3 26 26 H 1.08994 * 109.47219 * 183.94944 * 3 2 1 27 27 H 1.09005 * 109.46682 * 303.94704 * 3 2 1 28 28 H 1.08999 * 109.47532 * 63.94581 * 3 2 1 29 29 H 1.08008 * 120.02060 * 359.97438 * 5 4 2 30 30 H 1.08004 * 119.95393 * 179.97438 * 6 5 4 31 31 H 1.08000 * 119.92835 * 179.97438 * 7 6 5 32 32 H 1.00899 * 111.00127 * 171.10593 * 13 11 10 33 33 H 1.00905 * 111.00313 * 295.06572 * 13 11 10 34 34 H 1.08996 * 109.47561 * 304.99756 * 14 11 10 35 35 H 1.09006 * 109.47042 * 64.99515 * 14 11 10 36 36 H 0.96997 * 120.00361 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9695 -0.7282 1.0818 5 6 1.6576 -0.3477 2.3811 6 6 2.1541 -1.0690 3.4488 7 6 2.9618 -2.1693 3.2264 8 6 3.2795 -2.5480 1.9340 9 17 4.3001 -3.9253 1.6598 10 6 2.7805 -1.8336 0.8608 11 6 3.1211 -2.2502 -0.5469 12 1 3.9350 -2.9749 -0.5244 13 7 3.5359 -1.0717 -1.3195 14 6 1.8924 -2.8834 -1.2028 15 6 2.2653 -3.4104 -2.5645 16 1 3.2773 -3.3040 -2.9261 17 6 1.3145 -4.0284 -3.3487 18 7 0.0819 -4.1576 -2.9085 19 14 1.7769 -4.6823 -5.0362 20 1 3.2143 -4.4133 -5.2944 21 1 1.5302 -6.1458 -5.0847 22 1 0.9537 -4.0069 -6.0714 23 1 -0.3634 0.4513 0.9231 24 1 -0.3632 0.5739 -0.8526 25 1 -0.3633 -1.0252 -0.0708 26 1 3.0828 1.3431 -0.0708 27 1 1.5899 1.9162 -0.8526 28 1 1.7044 1.8724 0.9232 29 1 1.0279 0.5123 2.5560 30 1 1.9120 -0.7730 4.4589 31 1 3.3490 -2.7314 4.0633 32 1 3.9064 -1.3408 -2.2186 33 1 2.7724 -0.4202 -1.4233 34 1 1.5312 -3.7034 -0.5822 35 1 1.1083 -2.1331 -1.3057 36 1 -0.5870 -4.5927 -3.4600 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260542258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:14 Heat of formation + Delta-G solvation = 10.482695 kcal Electronic energy + Delta-G solvation = -18972.927052 eV Core-core repulsion = 16096.128095 eV Total energy + Delta-G solvation = -2876.798957 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.22304 -37.99674 -36.97967 -36.75692 -34.43018 -31.32534 -30.70372 -29.79935 -28.37948 -26.33155 -25.39630 -23.58623 -22.34889 -21.09769 -18.74353 -17.93429 -17.28184 -16.61039 -16.42410 -15.96442 -15.66508 -15.42014 -15.15032 -14.70934 -14.27580 -14.15891 -13.85603 -13.60780 -13.18427 -13.12465 -12.94999 -12.80759 -12.55540 -12.50601 -12.37294 -12.23724 -12.13873 -11.77594 -11.55172 -11.00922 -10.54597 -9.66201 -9.57464 -9.35667 -9.04592 -8.16117 -6.25626 0.19462 0.36884 1.23816 1.38108 1.39408 1.51761 2.41189 2.65970 2.97250 3.16833 3.83125 4.06273 4.09829 4.22552 4.37130 4.46063 4.52922 4.59749 4.66088 4.68705 4.79456 4.84770 5.03442 5.09208 5.11295 5.30024 5.35865 5.47129 5.47994 5.67761 5.80498 5.91803 6.05383 6.26418 6.45312 6.64436 6.90103 7.10351 7.42044 8.94979 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.017913 B = 0.007438 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.725719 B = 3763.781799 C = 4668.775525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.518 5.518 3 C 0.031 3.969 4 C 0.099 3.901 5 C -0.146 4.146 6 C -0.101 4.101 7 C -0.116 4.116 8 C -0.048 4.048 9 Cl -0.077 7.077 10 C -0.057 4.057 11 C 0.145 3.855 12 H 0.060 0.940 13 N -0.832 5.832 14 C 0.022 3.978 15 C -0.529 4.529 16 H 0.056 0.944 17 C 0.005 3.995 18 N -0.928 5.928 19 Si 0.958 3.042 20 H -0.263 1.263 21 H -0.283 1.283 22 H -0.278 1.278 23 H 0.052 0.948 24 H 0.082 0.918 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.045 0.955 29 H 0.148 0.852 30 H 0.168 0.832 31 H 0.154 0.846 32 H 0.329 0.671 33 H 0.355 0.645 34 H -0.032 1.032 35 H 0.017 0.983 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.927 10.261 11.971 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.239 5.239 3 C -0.115 4.115 4 C 0.005 3.995 5 C -0.166 4.166 6 C -0.120 4.120 7 C -0.135 4.135 8 C -0.076 4.076 9 Cl -0.048 7.048 10 C -0.059 4.059 11 C 0.033 3.967 12 H 0.078 0.922 13 N -0.366 5.366 14 C -0.017 4.017 15 C -0.567 4.567 16 H 0.074 0.926 17 C -0.193 4.193 18 N -0.569 5.569 19 Si 0.783 3.217 20 H -0.187 1.187 21 H -0.210 1.210 22 H -0.204 1.204 23 H 0.070 0.930 24 H 0.100 0.900 25 H 0.058 0.942 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.165 0.835 30 H 0.185 0.815 31 H 0.172 0.828 32 H 0.140 0.860 33 H 0.175 0.825 34 H -0.014 1.014 35 H 0.036 0.964 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.512 10.028 12.023 16.045 hybrid contribution -0.977 -1.001 -1.137 1.802 sum 2.535 9.027 10.886 14.367 Atomic orbital electron populations 1.22397 0.85439 1.01504 1.01878 1.59181 1.08724 1.15150 1.40874 1.22509 1.01073 0.86034 1.01877 1.18574 0.96720 0.94214 0.89996 1.21924 1.01120 1.01398 0.92153 1.21278 0.96369 0.93965 1.00356 1.21310 0.99396 0.98504 0.94283 1.20961 0.99174 0.92280 0.95180 1.98334 1.67094 1.42567 1.96808 1.19969 0.96382 0.94403 0.95183 1.20087 0.96295 0.91796 0.88560 0.92169 1.59413 1.40256 1.14897 1.22074 1.19548 0.94200 0.94177 0.93732 1.21567 0.95886 1.37219 1.02037 0.92559 1.25841 0.94913 0.96429 1.02109 1.70114 1.03258 1.44718 1.38802 0.85502 0.78710 0.77777 0.79666 1.18730 1.20953 1.20403 0.92995 0.89955 0.94198 0.91347 0.89759 0.93632 0.83474 0.81480 0.82845 0.85971 0.82465 1.01407 0.96433 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 8.93 127.69 1.14 2.15 16 2 N -0.52 -16.27 1.55 -745.11 -1.15 -17.42 16 3 C 0.03 0.74 8.51 127.69 1.09 1.83 16 4 C 0.10 3.28 4.51 38.21 0.17 3.45 16 5 C -0.15 -3.71 8.57 22.40 0.19 -3.51 16 6 C -0.10 -2.26 10.04 22.25 0.22 -2.04 16 7 C -0.12 -3.09 9.83 22.31 0.22 -2.87 16 8 C -0.05 -1.68 6.31 22.30 0.14 -1.54 16 9 Cl -0.08 -2.70 27.05 -2.72 -0.07 -2.77 16 10 C -0.06 -2.22 4.96 -19.71 -0.10 -2.31 16 11 C 0.14 6.46 2.68 44.17 0.12 6.58 16 12 H 0.06 2.84 6.31 -2.39 -0.02 2.82 16 13 N -0.83 -33.83 8.98 -171.80 -1.54 -35.37 16 14 C 0.02 1.18 4.44 29.85 0.13 1.31 16 15 C -0.53 -30.21 8.62 25.60 0.22 -29.99 16 16 H 0.06 3.12 7.16 -2.91 -0.02 3.10 16 17 C 0.00 0.28 5.46 84.65 0.46 0.74 16 18 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 19 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 20 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 21 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 H 0.05 1.20 7.12 -2.39 -0.02 1.19 16 24 H 0.08 2.19 8.12 -2.38 -0.02 2.17 16 25 H 0.04 1.47 7.60 -2.39 -0.02 1.45 16 26 H 0.07 1.79 8.02 -2.39 -0.02 1.77 16 27 H 0.08 1.77 8.12 -2.38 -0.02 1.75 16 28 H 0.05 0.89 7.34 -2.39 -0.02 0.87 16 29 H 0.15 2.87 7.02 -2.91 -0.02 2.85 16 30 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 31 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 32 H 0.33 13.71 8.06 -89.69 -0.72 12.99 16 33 H 0.36 13.94 5.18 -89.69 -0.46 13.48 16 34 H -0.03 -1.99 8.14 -2.39 -0.02 -2.01 16 35 H 0.02 0.98 6.34 -2.38 -0.02 0.97 16 36 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -67.14 303.55 3.46 -63.68 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -0.09 Total: 27.50 kcal Atomic # 6 Polarization: -30.21 SS G_CDS: 4.01 Total: -26.20 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -2.41 Total: -109.26 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 17 Polarization: -2.70 SS G_CDS: -0.07 Total: -2.77 kcal Total: -67.14 3.46 -63.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260542258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.162 kcal (2) G-P(sol) polarization free energy of solvation -67.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds