Wall clock time and date at job start Mon Mar 30 2020 06:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 111.00168 * 2 1 4 4 C 1.46903 * 110.99644 * 123.94953 * 2 1 3 5 5 C 1.50708 * 109.47048 * 164.28533 * 4 2 1 6 6 C 1.38240 * 120.00216 * 105.09477 * 5 4 2 7 7 C 1.38212 * 120.01043 * 179.72663 * 6 5 4 8 8 C 1.38270 * 120.02692 * 0.50596 * 7 6 5 9 9 C 1.50703 * 119.99058 * 179.76933 * 8 7 6 10 10 H 1.09005 * 109.46784 * 199.72702 * 9 8 7 11 11 N 1.46902 * 109.47220 * 319.72082 * 9 8 7 12 12 C 1.50698 * 109.47154 * 79.72502 * 9 8 7 13 13 H 1.07997 * 119.99791 * 359.97438 * 12 9 8 14 14 C 1.37875 * 119.99735 * 179.97438 * 12 9 8 15 15 N 1.31512 * 120.00143 * 0.02562 * 14 12 9 16 16 Si 1.86807 * 119.99674 * 180.02562 * 14 12 9 17 17 H 1.48493 * 109.47001 * 60.00223 * 16 14 12 18 18 H 1.48506 * 109.46910 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47051 * 299.99914 * 16 14 12 20 20 C 1.38192 * 120.01288 * 359.49555 * 8 7 6 21 21 C 1.38323 * 120.00839 * 285.07266 * 5 4 2 22 22 Cl 1.73605 * 120.01451 * 0.02562 * 21 5 4 23 23 H 1.08996 * 109.47166 * 296.04795 * 1 2 3 24 24 H 1.09007 * 109.46246 * 56.04680 * 1 2 3 25 25 H 1.08998 * 109.46943 * 176.04574 * 1 2 3 26 26 H 1.09000 * 109.47073 * 189.23239 * 3 2 1 27 27 H 1.08997 * 109.47163 * 309.23527 * 3 2 1 28 28 H 1.09006 * 109.47189 * 69.23539 * 3 2 1 29 29 H 1.08998 * 109.47078 * 44.29110 * 4 2 1 30 30 H 1.08993 * 109.47577 * 284.28722 * 4 2 1 31 31 H 1.08001 * 119.99240 * 359.97438 * 6 5 4 32 32 H 1.07999 * 119.99070 * 180.27362 * 7 6 5 33 33 H 1.00902 * 110.99397 * 60.00681 * 11 9 8 34 34 H 1.00899 * 110.99533 * 183.95212 * 11 9 8 35 35 H 0.97005 * 119.99643 * 180.02562 * 15 14 12 36 36 H 1.07995 * 120.00400 * 180.27663 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 3.4523 -1.0734 0.9053 6 6 4.4248 -0.3787 1.6001 7 6 5.7608 -0.6644 1.3912 8 6 6.1259 -1.6379 0.4796 9 6 7.5831 -1.9452 0.2487 10 1 7.7001 -2.4526 -0.7089 11 7 8.3516 -0.6932 0.2364 12 6 8.0901 -2.8351 1.3542 13 1 7.4239 -3.1466 2.1450 14 6 9.4045 -3.2515 1.3558 15 7 10.2158 -2.8717 0.3930 16 14 10.0328 -4.3552 2.7257 17 1 9.2556 -5.6204 2.7378 18 1 11.4688 -4.6578 2.4982 19 1 9.8738 -3.6641 4.0304 20 6 5.1547 -2.3330 -0.2155 21 6 3.8167 -2.0510 -0.0029 22 17 2.5960 -2.9237 -0.8759 23 1 -0.3633 0.4513 0.9232 24 1 -0.3632 0.5740 -0.8525 25 1 -0.3633 -1.0252 -0.0709 26 1 3.0727 1.3471 -0.1649 27 1 1.5189 1.9436 -0.7960 28 1 1.7856 1.8412 0.9610 29 1 1.4388 -1.6978 1.2369 30 1 1.8888 -0.1801 2.0506 31 1 4.1403 0.3847 2.3092 32 1 6.5202 -0.1246 1.9374 33 1 8.2593 -0.2038 1.1140 34 1 9.3216 -0.8666 0.0194 35 1 11.1405 -3.1650 0.3940 36 1 5.4399 -3.0964 -0.9242 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260575543.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:53 Heat of formation + Delta-G solvation = 14.901476 kcal Electronic energy + Delta-G solvation = -18154.732161 eV Core-core repulsion = 15278.124817 eV Total energy + Delta-G solvation = -2876.607344 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.24030 -37.09587 -35.98902 -34.57392 -31.87041 -30.46221 -29.87001 -27.54681 -26.86414 -25.55105 -22.98013 -22.09906 -21.30907 -19.75637 -16.58478 -16.20320 -15.65263 -15.40139 -15.15802 -14.59055 -14.48847 -14.20901 -13.54887 -13.07387 -12.96389 -12.62583 -12.44297 -12.31561 -11.90127 -11.67234 -11.52742 -11.40680 -11.26664 -10.99268 -10.82527 -10.74664 -10.51807 -10.38221 -10.02268 -9.61901 -8.70816 -8.35031 -8.20951 -7.88997 -7.24148 -6.13512 -4.30762 1.82237 1.88810 2.69465 3.21667 3.27040 3.30140 3.97724 4.27152 4.44211 4.98018 5.07905 5.09832 5.18851 5.31231 5.43170 5.50492 5.63054 5.67995 5.78860 5.80617 5.98507 6.02822 6.06135 6.27590 6.53427 6.56164 6.80414 6.94359 7.04005 7.09303 7.10950 7.44070 7.68760 7.71513 8.03233 8.61257 8.87148 9.05910 9.41244 10.84069 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.030255 B = 0.004808 C = 0.004575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.238046 B = 5822.157399 C = 6119.118452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.536 5.536 3 C 0.026 3.974 4 C 0.102 3.898 5 C -0.105 4.105 6 C -0.108 4.108 7 C -0.107 4.107 8 C -0.008 4.008 9 C 0.239 3.761 10 H 0.049 0.951 11 N -0.849 5.849 12 C -0.546 4.546 13 H 0.056 0.944 14 C 0.068 3.932 15 N -0.892 5.892 16 Si 0.898 3.102 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.277 1.277 20 C -0.119 4.119 21 C -0.007 4.007 22 Cl -0.083 7.083 23 H 0.021 0.979 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.022 0.978 29 H 0.081 0.919 30 H 0.040 0.960 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.311 0.689 34 H 0.357 0.643 35 H 0.267 0.733 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.844 5.464 0.946 15.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.259 5.259 3 C -0.123 4.123 4 C -0.025 4.025 5 C -0.106 4.106 6 C -0.127 4.127 7 C -0.125 4.125 8 C -0.009 4.009 9 C 0.129 3.871 10 H 0.067 0.933 11 N -0.379 5.379 12 C -0.586 4.586 13 H 0.074 0.926 14 C -0.135 4.135 15 N -0.531 5.531 16 Si 0.725 3.275 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.138 4.138 21 C -0.034 4.034 22 Cl -0.054 7.054 23 H 0.039 0.961 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.040 0.960 29 H 0.099 0.901 30 H 0.058 0.942 31 H 0.134 0.866 32 H 0.141 0.859 33 H 0.121 0.879 34 H 0.173 0.827 35 H 0.077 0.923 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.090 5.353 -0.262 16.013 hybrid contribution 0.622 -0.829 2.222 2.452 sum -14.468 4.523 1.960 15.285 Atomic orbital electron populations 1.22360 0.87621 1.02099 1.00024 1.61926 1.07159 1.13782 1.43036 1.22403 1.01773 0.88447 0.99649 1.20947 0.92235 0.98243 0.91114 1.19263 0.94794 0.97747 0.98822 1.20861 0.92682 0.99392 0.99715 1.20982 0.95018 0.98148 0.98362 1.20455 0.97464 0.91498 0.91495 1.18020 0.83810 0.88222 0.97000 0.93323 1.59540 1.18560 1.23526 1.36285 1.21755 0.95650 1.31442 1.09703 0.92562 1.25010 0.96800 0.95769 0.95926 1.69732 1.06042 1.45343 1.31996 0.86557 0.77702 0.81103 0.82091 1.20088 1.21148 1.20202 1.20939 0.90072 1.01277 1.01520 1.20589 0.89217 0.96730 0.96852 1.98308 1.55859 1.75575 1.75687 0.96090 0.91536 0.91476 0.90826 0.91788 0.95954 0.90073 0.94175 0.86594 0.85917 0.87930 0.82699 0.92319 0.85572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.53 60.07 0.57 0.84 16 2 N -0.54 -6.73 4.86 -252.71 -1.23 -7.95 16 3 C 0.03 0.29 9.40 60.07 0.56 0.86 16 4 C 0.10 1.34 4.44 -4.97 -0.02 1.32 16 5 C -0.10 -1.67 4.68 -104.59 -0.49 -2.16 16 6 C -0.11 -1.73 9.40 -39.59 -0.37 -2.10 16 7 C -0.11 -1.99 9.29 -39.58 -0.37 -2.36 16 8 C -0.01 -0.17 4.89 -104.63 -0.51 -0.68 16 9 C 0.24 5.82 2.95 -70.01 -0.21 5.61 16 10 H 0.05 1.31 8.00 -51.93 -0.42 0.89 16 11 N -0.85 -19.69 9.02 -6.65 -0.06 -19.75 16 12 C -0.55 -14.32 8.70 -34.44 -0.30 -14.62 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.07 1.79 5.38 -17.82 -0.10 1.69 16 15 N -0.89 -24.10 11.54 55.43 0.64 -23.46 16 16 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 C -0.12 -2.35 9.45 -39.55 -0.37 -2.72 16 21 C -0.01 -0.12 6.31 -39.50 -0.25 -0.37 16 22 Cl -0.08 -1.30 27.55 -51.86 -1.43 -2.73 16 23 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 24 H 0.07 0.60 8.06 -51.93 -0.42 0.18 16 25 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 26 H 0.07 0.97 7.41 -51.93 -0.38 0.58 16 27 H 0.06 0.65 8.03 -51.93 -0.42 0.23 16 28 H 0.02 0.23 8.01 -51.93 -0.42 -0.18 16 29 H 0.08 1.05 7.41 -51.93 -0.38 0.67 16 30 H 0.04 0.48 7.77 -51.93 -0.40 0.08 16 31 H 0.12 1.55 8.00 -52.49 -0.42 1.13 16 32 H 0.12 2.23 6.67 -52.49 -0.35 1.88 16 33 H 0.31 6.77 7.35 -39.29 -0.29 6.48 16 34 H 0.36 8.88 7.08 -39.29 -0.28 8.60 16 35 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.13 2.47 8.04 -52.49 -0.42 2.05 16 LS Contribution 312.36 15.07 4.71 4.71 Total: -1.00 -26.76 312.36 -9.22 -35.98 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -4.98 Total: 12.30 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -1.85 Total: -14.69 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.65 Total: -51.16 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.43 Total: -2.73 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -26.76 -9.22 -35.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260575543.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.884 kcal (2) G-P(sol) polarization free energy of solvation -26.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds