Wall clock time and date at job start Mon Mar 30 2020 07:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86803 * 119.99720 * 2 1 4 4 H 1.48499 * 109.47035 * 269.99412 * 3 2 1 5 5 H 1.48498 * 109.47521 * 29.99744 * 3 2 1 6 6 H 1.48502 * 109.47173 * 149.99642 * 3 2 1 7 7 C 1.40064 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00017 * 180.02562 * 7 2 1 9 9 C 1.40067 * 120.00142 * 0.02562 * 7 2 1 10 10 C 1.39620 * 127.05800 * 0.13420 * 9 7 2 11 11 N 1.33019 * 107.46045 * 180.26322 * 10 9 7 12 12 C 1.31012 * 109.97947 * 359.76246 * 11 10 9 13 13 C 1.50702 * 125.17676 * 180.02562 * 12 11 10 14 14 C 1.53000 * 117.49653 * 8.60456 * 13 12 11 15 15 C 1.53002 * 117.50011 * 299.97788 * 13 12 11 16 16 N 1.35073 * 109.64672 * 0.02562 * 12 11 10 17 17 C 1.46505 * 126.48485 * 179.97438 * 16 12 11 18 18 C 1.50706 * 109.47014 * 89.99571 * 17 16 12 19 19 C 1.38233 * 120.00109 * 269.72616 * 18 17 16 20 20 C 1.38238 * 119.99754 * 179.76611 * 19 18 17 21 21 C 1.38234 * 120.00016 * 0.50732 * 20 19 18 22 22 C 1.38238 * 120.00063 * 359.74632 * 21 20 19 23 23 C 1.38235 * 120.00108 * 0.02562 * 22 21 20 24 24 H 0.97008 * 120.00251 * 0.02562 * 1 2 3 25 25 H 1.08000 * 126.26837 * 0.03304 * 10 9 7 26 26 H 1.08994 * 115.54889 * 154.30706 * 13 12 11 27 27 H 1.08993 * 117.50300 * 359.97438 * 14 13 12 28 28 H 1.09004 * 117.49659 * 145.02289 * 14 13 12 29 29 H 1.08998 * 117.49918 * 214.97686 * 15 13 12 30 30 H 1.08992 * 117.49778 * 359.97438 * 15 13 12 31 31 H 1.09000 * 109.46864 * 330.00379 * 17 16 12 32 32 H 1.09000 * 109.47078 * 209.99632 * 17 16 12 33 33 H 1.08004 * 119.99934 * 0.02562 * 19 18 17 34 34 H 1.07999 * 119.99924 * 180.23621 * 20 19 18 35 35 H 1.08001 * 120.00318 * 179.72031 * 21 20 19 36 36 H 1.08000 * 120.00578 * 179.97438 * 22 21 20 37 37 H 1.07999 * 120.00165 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4901 2.0464 -1.4001 5 1 1.4399 2.6528 0.7000 6 1 3.5400 1.4403 0.7001 7 6 2.0089 -1.2130 0.0005 8 1 3.0889 -1.2130 0.0010 9 6 1.3086 -2.4260 0.0005 10 6 -0.0771 -2.5976 -0.0026 11 7 -0.3172 -3.9059 0.0045 12 6 0.8130 -4.5685 0.0067 13 6 0.9390 -6.0702 0.0138 14 6 -0.3393 -6.8873 -0.1842 15 6 0.3233 -6.8253 1.1936 16 7 1.8481 -3.7008 0.0016 17 6 3.2724 -4.0439 0.0026 18 6 3.7600 -4.1690 -1.4180 19 6 3.7085 -5.3914 -2.0613 20 6 4.1512 -5.5050 -3.3659 21 6 4.6551 -4.3985 -4.0237 22 6 4.7114 -3.1771 -3.3785 23 6 4.2644 -3.0625 -2.0755 24 1 -0.4851 0.8401 -0.0004 25 1 -0.8181 -1.8120 -0.0060 26 1 1.8610 -6.4666 -0.4114 27 1 -1.2714 -6.3388 -0.3191 28 1 -0.2584 -7.8216 -0.7398 29 1 0.8401 -7.7186 1.5442 30 1 -0.1724 -6.2358 1.9648 31 1 3.4175 -4.9916 0.5212 32 1 3.8344 -3.2611 0.5120 33 1 3.3185 -6.2568 -1.5460 34 1 4.1074 -6.4592 -3.8699 35 1 5.0051 -4.4882 -5.0414 36 1 5.1055 -2.3127 -3.8922 37 1 4.3088 -2.1084 -1.5713 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261112358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:34 Heat of formation + Delta-G solvation = 97.707260 kcal Electronic energy + Delta-G solvation = -20002.223061 eV Core-core repulsion = 17131.639294 eV Total energy + Delta-G solvation = -2870.583766 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.20376 -38.69535 -36.20461 -33.62831 -33.45006 -30.63560 -30.14411 -28.52038 -25.55518 -25.00948 -22.45892 -21.82892 -21.73058 -21.18432 -19.77304 -17.99412 -17.05449 -16.59576 -15.71485 -15.13086 -15.04665 -14.71912 -14.23245 -13.61538 -13.49530 -13.16144 -12.76419 -12.48535 -12.33751 -12.11976 -11.64366 -11.39547 -11.29742 -11.02644 -10.92357 -10.81136 -10.66112 -10.51656 -10.18508 -10.00448 -9.83939 -9.29444 -8.62676 -8.54247 -8.13796 -8.04458 -6.78965 -6.61374 -4.19319 1.58816 1.69876 2.94291 3.07668 3.10281 3.55982 3.87752 4.00400 4.36457 4.50437 4.87383 5.05725 5.13949 5.23268 5.27616 5.37259 5.47998 5.52592 5.57048 5.66715 5.75576 5.88787 5.95007 6.02918 6.09255 6.25296 6.31557 6.33879 6.62137 6.71230 6.76357 6.77549 6.93015 7.04838 7.16022 7.28464 7.66769 7.86933 8.01704 8.51431 8.90658 9.06988 9.13231 10.03386 10.34015 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.008649 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.611699 B = 3236.720887 C = 4968.255303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.439 4.439 8 H 0.069 0.931 9 C 0.183 3.817 10 C -0.133 4.133 11 N -0.475 5.475 12 C 0.106 3.894 13 C -0.048 4.048 14 C -0.163 4.163 15 C -0.179 4.179 16 N -0.483 5.483 17 C 0.163 3.837 18 C -0.093 4.093 19 C -0.105 4.105 20 C -0.128 4.128 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.091 4.091 24 H 0.278 0.722 25 H 0.184 0.816 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.421 -7.085 -3.135 11.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.144 4.144 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.475 4.475 8 H 0.087 0.913 9 C 0.072 3.928 10 C -0.282 4.282 11 N -0.193 5.193 12 C -0.146 4.146 13 C -0.068 4.068 14 C -0.200 4.200 15 C -0.217 4.217 16 N -0.175 5.175 17 C 0.038 3.962 18 C -0.095 4.095 19 C -0.123 4.123 20 C -0.146 4.146 21 C -0.142 4.142 22 C -0.143 4.143 23 C -0.109 4.109 24 H 0.089 0.911 25 H 0.201 0.799 26 H 0.114 0.886 27 H 0.122 0.878 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.513 -7.346 -3.104 10.956 hybrid contribution 1.250 1.214 -0.137 1.748 sum 8.763 -6.133 -3.241 11.176 Atomic orbital electron populations 1.69617 1.07242 1.28426 1.37512 1.25623 0.94829 1.00615 0.93324 0.86123 0.79902 0.80501 0.78999 1.19621 1.20173 1.18925 1.18309 0.93566 0.88447 1.47146 0.91283 1.18980 0.93113 0.82315 0.98361 1.23355 0.94069 0.90724 1.20007 1.69345 1.25853 1.07103 1.17034 1.20889 0.83320 0.90263 1.20091 1.19753 0.96902 0.87493 1.02694 1.22827 0.97908 1.00385 0.98920 1.22980 1.04794 1.01662 0.92291 1.44762 1.03651 1.06898 1.62211 1.20205 0.82041 1.01565 0.92363 1.20269 0.98253 0.93648 0.97308 1.21040 0.99149 0.97149 0.95004 1.21031 1.00109 0.98518 0.94909 1.21075 1.00444 0.93218 0.99493 1.21120 1.00657 0.97414 0.95064 1.21214 0.96567 0.98421 0.94743 0.91097 0.79933 0.88555 0.87785 0.89705 0.89701 0.88866 0.90363 0.89547 0.86452 0.86496 0.86597 0.86325 0.85450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.98 10.35 55.56 0.57 -20.41 16 2 C 0.07 1.82 5.50 -17.28 -0.10 1.72 16 3 Si 0.92 18.71 29.56 -169.99 -5.03 13.69 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.44 -11.38 9.05 -38.21 -0.35 -11.73 16 8 H 0.07 1.66 6.48 -52.48 -0.34 1.32 16 9 C 0.18 4.95 6.74 -83.68 -0.56 4.38 16 10 C -0.13 -3.81 10.88 -16.52 -0.18 -3.99 16 11 N -0.47 -12.87 10.69 -9.76 -0.10 -12.97 16 12 C 0.11 2.53 7.43 -154.96 -1.15 1.38 16 13 C -0.05 -0.91 5.68 -91.77 -0.52 -1.43 16 14 C -0.16 -2.75 10.13 -26.73 -0.27 -3.02 16 15 C -0.18 -2.95 10.24 -26.72 -0.27 -3.23 16 16 N -0.48 -11.38 2.78 -112.25 -0.31 -11.69 16 17 C 0.16 3.05 5.80 -5.19 -0.03 3.02 16 18 C -0.09 -1.65 5.46 -104.62 -0.57 -2.22 16 19 C -0.10 -1.65 9.63 -39.58 -0.38 -2.03 16 20 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 21 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 22 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 23 C -0.09 -1.58 9.70 -39.58 -0.38 -1.96 16 24 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 25 H 0.18 5.46 5.78 -52.49 -0.30 5.16 16 26 H 0.10 1.59 5.80 -51.93 -0.30 1.29 16 27 H 0.10 1.99 7.86 -51.93 -0.41 1.58 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 31 H 0.08 1.28 7.59 -51.93 -0.39 0.89 16 32 H 0.09 1.58 7.44 -51.93 -0.39 1.20 16 33 H 0.12 1.68 6.06 -52.48 -0.32 1.36 16 34 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 37 H 0.13 2.26 7.24 -52.49 -0.38 1.88 16 LS Contribution 312.20 15.07 4.70 4.70 Total: -1.00 -30.20 312.20 -10.62 -40.82 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -4.50 Total: 11.55 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -5.96 Total: -25.70 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.16 Total: -45.07 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.20 -10.62 -40.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.529 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds