Wall clock time and date at job start Mon Mar 30 2020 07:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86803 * 119.99720 * 2 1 4 4 H 1.48499 * 109.47035 * 269.99412 * 3 2 1 5 5 H 1.48498 * 109.47521 * 29.99744 * 3 2 1 6 6 H 1.48502 * 109.47173 * 149.99642 * 3 2 1 7 7 C 1.40064 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00017 * 180.02562 * 7 2 1 9 9 C 1.40067 * 120.00142 * 0.02562 * 7 2 1 10 10 C 1.39620 * 127.05800 * 0.13420 * 9 7 2 11 11 N 1.33019 * 107.46045 * 180.26322 * 10 9 7 12 12 C 1.31012 * 109.97947 * 359.76246 * 11 10 9 13 13 C 1.50702 * 125.17676 * 180.02562 * 12 11 10 14 14 C 1.53000 * 117.49653 * 8.60456 * 13 12 11 15 15 C 1.53002 * 117.50011 * 299.97788 * 13 12 11 16 16 N 1.35073 * 109.64672 * 0.02562 * 12 11 10 17 17 C 1.46505 * 126.48485 * 179.97438 * 16 12 11 18 18 C 1.50706 * 109.47014 * 89.99571 * 17 16 12 19 19 C 1.38233 * 120.00109 * 269.72616 * 18 17 16 20 20 C 1.38238 * 119.99754 * 179.76611 * 19 18 17 21 21 C 1.38234 * 120.00016 * 0.50732 * 20 19 18 22 22 C 1.38238 * 120.00063 * 359.74632 * 21 20 19 23 23 C 1.38235 * 120.00108 * 0.02562 * 22 21 20 24 24 H 0.97008 * 120.00251 * 0.02562 * 1 2 3 25 25 H 1.08000 * 126.26837 * 0.03304 * 10 9 7 26 26 H 1.08994 * 115.54889 * 154.30706 * 13 12 11 27 27 H 1.08993 * 117.50300 * 359.97438 * 14 13 12 28 28 H 1.09004 * 117.49659 * 145.02289 * 14 13 12 29 29 H 1.08998 * 117.49918 * 214.97686 * 15 13 12 30 30 H 1.08992 * 117.49778 * 359.97438 * 15 13 12 31 31 H 1.09000 * 109.46864 * 330.00379 * 17 16 12 32 32 H 1.09000 * 109.47078 * 209.99632 * 17 16 12 33 33 H 1.08004 * 119.99934 * 0.02562 * 19 18 17 34 34 H 1.07999 * 119.99924 * 180.23621 * 20 19 18 35 35 H 1.08001 * 120.00318 * 179.72031 * 21 20 19 36 36 H 1.08000 * 120.00578 * 179.97438 * 22 21 20 37 37 H 1.07999 * 120.00165 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4901 2.0464 -1.4001 5 1 1.4399 2.6528 0.7000 6 1 3.5400 1.4403 0.7001 7 6 2.0089 -1.2130 0.0005 8 1 3.0889 -1.2130 0.0010 9 6 1.3086 -2.4260 0.0005 10 6 -0.0771 -2.5976 -0.0026 11 7 -0.3172 -3.9059 0.0045 12 6 0.8130 -4.5685 0.0067 13 6 0.9390 -6.0702 0.0138 14 6 -0.3393 -6.8873 -0.1842 15 6 0.3233 -6.8253 1.1936 16 7 1.8481 -3.7008 0.0016 17 6 3.2724 -4.0439 0.0026 18 6 3.7600 -4.1690 -1.4180 19 6 3.7085 -5.3914 -2.0613 20 6 4.1512 -5.5050 -3.3659 21 6 4.6551 -4.3985 -4.0237 22 6 4.7114 -3.1771 -3.3785 23 6 4.2644 -3.0625 -2.0755 24 1 -0.4851 0.8401 -0.0004 25 1 -0.8181 -1.8120 -0.0060 26 1 1.8610 -6.4666 -0.4114 27 1 -1.2714 -6.3388 -0.3191 28 1 -0.2584 -7.8216 -0.7398 29 1 0.8401 -7.7186 1.5442 30 1 -0.1724 -6.2358 1.9648 31 1 3.4175 -4.9916 0.5212 32 1 3.8344 -3.2611 0.5120 33 1 3.3185 -6.2568 -1.5460 34 1 4.1074 -6.4592 -3.8699 35 1 5.0051 -4.4882 -5.0414 36 1 5.1055 -2.3127 -3.8922 37 1 4.3088 -2.1084 -1.5713 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261112358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:31:33 Heat of formation + Delta-G solvation = 82.793056 kcal Electronic energy + Delta-G solvation = -20002.869789 eV Core-core repulsion = 17131.639294 eV Total energy + Delta-G solvation = -2871.230495 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.02323 -39.94485 -37.66062 -35.46753 -35.08548 -31.82037 -31.65983 -30.41634 -27.10614 -26.82704 -23.84398 -23.22830 -23.14158 -22.49313 -21.69293 -19.68181 -18.85281 -17.99835 -17.28807 -16.77944 -16.33868 -16.00593 -15.72365 -15.15077 -15.04379 -14.51467 -14.37440 -14.10039 -13.81007 -13.48726 -13.31982 -12.99093 -12.94335 -12.52172 -12.48156 -12.28591 -12.08542 -11.98160 -11.74148 -11.56197 -11.22873 -11.06299 -10.17154 -10.00004 -9.79765 -9.67425 -8.76349 -8.50404 -6.20753 0.38037 0.52339 1.27755 1.38197 1.52533 1.81573 2.18286 2.51957 2.63573 3.02660 3.26760 3.43538 3.79317 3.87040 3.90948 4.04193 4.13362 4.17996 4.27143 4.32217 4.42753 4.49767 4.69050 4.74935 4.84054 4.99382 5.04658 5.09001 5.14413 5.18750 5.34279 5.43192 5.56269 5.61352 5.67100 5.72369 5.89506 6.05759 6.12832 6.55851 6.90933 7.02199 7.28773 8.04615 8.47102 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.008649 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.611699 B = 3236.720887 C = 4968.255303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.025 3.975 3 Si 0.996 3.004 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.461 4.461 8 H 0.079 0.921 9 C 0.162 3.838 10 C -0.184 4.184 11 N -0.514 5.514 12 C 0.127 3.873 13 C -0.075 4.075 14 C -0.154 4.154 15 C -0.158 4.158 16 N -0.485 5.485 17 C 0.159 3.841 18 C -0.115 4.115 19 C -0.112 4.112 20 C -0.126 4.126 21 C -0.120 4.120 22 C -0.133 4.133 23 C -0.117 4.117 24 H 0.283 0.717 25 H 0.159 0.841 26 H 0.128 0.872 27 H 0.073 0.927 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.134 0.866 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.137 0.863 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.765 -9.269 -4.292 14.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.188 4.188 3 Si 0.816 3.184 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.496 4.496 8 H 0.097 0.903 9 C 0.050 3.950 10 C -0.330 4.330 11 N -0.234 5.234 12 C -0.128 4.128 13 C -0.095 4.095 14 C -0.191 4.191 15 C -0.196 4.196 16 N -0.176 5.176 17 C 0.037 3.963 18 C -0.117 4.117 19 C -0.130 4.130 20 C -0.144 4.144 21 C -0.138 4.138 22 C -0.151 4.151 23 C -0.135 4.135 24 H 0.094 0.906 25 H 0.175 0.825 26 H 0.146 0.854 27 H 0.092 0.908 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.086 0.914 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.152 0.848 34 H 0.169 0.831 35 H 0.168 0.832 36 H 0.155 0.845 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 9.869 -9.523 -4.259 14.361 hybrid contribution 0.523 1.731 0.185 1.818 sum 10.392 -7.792 -4.074 13.613 Atomic orbital electron populations 1.69761 1.09001 1.29586 1.38094 1.26692 0.95610 1.04242 0.92247 0.84989 0.78675 0.75418 0.79287 1.18888 1.19545 1.17810 1.18634 0.94097 0.88865 1.48044 0.90322 1.19184 0.92881 0.84123 0.98814 1.23137 0.94883 0.91286 1.23703 1.69284 1.27860 1.06659 1.19558 1.21976 0.82649 0.92686 1.15508 1.20068 0.99350 0.84267 1.05792 1.22890 0.95479 1.00993 0.99777 1.23015 1.03534 1.01943 0.91110 1.45020 1.05637 1.05691 1.61267 1.20462 0.79221 1.02534 0.94120 1.20201 0.99889 0.94869 0.96708 1.21280 0.99135 0.96709 0.95917 1.21468 0.98617 1.00070 0.94245 1.21515 0.99060 0.92386 1.00850 1.21402 1.00356 0.99042 0.94261 1.21262 0.98245 0.97906 0.96112 0.90646 0.82456 0.85448 0.90817 0.85566 0.85228 0.91415 0.87683 0.90103 0.84832 0.83132 0.83243 0.84533 0.87228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.38 10.35 21.85 0.23 -46.16 16 2 C 0.02 1.30 5.50 85.28 0.47 1.76 16 3 Si 1.00 39.16 29.56 68.60 2.03 41.19 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 5 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 7 C -0.46 -24.97 9.05 23.16 0.21 -24.76 16 8 H 0.08 3.94 6.48 -2.91 -0.02 3.92 16 9 C 0.16 9.19 6.74 38.88 0.26 9.46 16 10 C -0.18 -11.29 10.88 84.85 0.92 -10.37 16 11 N -0.51 -29.23 10.69 -184.80 -1.98 -31.20 16 12 C 0.13 6.14 7.43 137.97 1.02 7.16 16 13 C -0.08 -2.65 5.68 -11.54 -0.07 -2.71 16 14 C -0.15 -4.81 10.13 30.60 0.31 -4.50 16 15 C -0.16 -4.75 10.24 30.60 0.31 -4.44 16 16 N -0.48 -23.33 2.78 -509.05 -1.41 -24.75 16 17 C 0.16 5.93 5.80 85.63 0.50 6.43 16 18 C -0.12 -3.97 5.46 -19.86 -0.11 -4.08 16 19 C -0.11 -3.21 9.63 22.27 0.21 -2.99 16 20 C -0.13 -3.07 10.05 22.27 0.22 -2.84 16 21 C -0.12 -2.91 10.05 22.27 0.22 -2.69 16 22 C -0.13 -3.79 10.05 22.27 0.22 -3.57 16 23 C -0.12 -4.04 9.70 22.27 0.22 -3.82 16 24 H 0.28 14.26 8.30 -92.70 -0.77 13.50 16 25 H 0.16 10.27 5.78 -2.91 -0.02 10.25 16 26 H 0.13 3.69 5.80 -2.39 -0.01 3.68 16 27 H 0.07 2.79 7.86 -2.39 -0.02 2.77 16 28 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 29 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.07 2.40 8.14 -2.39 -0.02 2.39 16 31 H 0.11 3.26 7.59 -2.39 -0.02 3.24 16 32 H 0.08 3.04 7.44 -2.39 -0.02 3.02 16 33 H 0.13 3.28 6.06 -2.91 -0.02 3.26 16 34 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 35 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 36 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 37 H 0.11 4.05 7.24 -2.91 -0.02 4.03 16 Total: -1.00 -71.26 312.20 4.88 -66.38 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: 1.08 Total: 36.49 kcal Atomic # 6 Polarization: -46.89 SS G_CDS: 4.94 Total: -41.96 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -3.16 Total: -102.10 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -71.26 4.88 -66.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.173 kcal (2) G-P(sol) polarization free energy of solvation -71.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds