Wall clock time and date at job start Mon Mar 30 2020 07:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86791 * 120.00367 * 2 1 4 4 H 1.48504 * 109.47421 * 90.00367 * 3 2 1 5 5 H 1.48505 * 109.47338 * 330.00421 * 3 2 1 6 6 H 1.48504 * 109.47418 * 210.00292 * 3 2 1 7 7 C 1.37878 * 119.99280 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99738 * 180.73657 * 7 2 1 9 9 C 1.50693 * 120.00610 * 0.73379 * 7 2 1 10 10 H 1.09008 * 109.47132 * 328.44058 * 9 7 2 11 11 N 1.46896 * 109.47562 * 208.43800 * 9 7 2 12 12 C 1.46907 * 110.99958 * 85.00088 * 11 9 7 13 13 C 1.50697 * 109.47267 * 180.02562 * 12 11 9 14 14 C 1.38233 * 120.00147 * 269.72546 * 13 12 11 15 15 C 1.38232 * 120.00408 * 179.76344 * 14 13 12 16 16 C 1.38235 * 119.99619 * 0.50941 * 15 14 13 17 17 C 1.38238 * 120.00271 * 359.74748 * 16 15 14 18 18 C 1.38235 * 120.00019 * 89.99832 * 13 12 11 19 19 C 1.50702 * 109.47065 * 88.43527 * 9 7 2 20 20 C 1.38673 * 120.42150 * 253.69835 * 19 9 7 21 21 C 1.38623 * 118.41941 * 180.02562 * 20 19 9 22 22 C 1.38234 * 119.16216 * 0.02562 * 21 20 19 23 23 N 1.31852 * 120.76216 * 0.02562 * 22 21 20 24 24 C 1.31886 * 121.72566 * 359.70600 * 23 22 21 25 25 H 0.96998 * 120.00364 * 174.57970 * 1 2 3 26 26 H 1.00902 * 111.00173 * 208.95322 * 11 9 7 27 27 H 1.09001 * 109.46776 * 300.00302 * 12 11 9 28 28 H 1.08998 * 109.47214 * 59.99822 * 12 11 9 29 29 H 1.07998 * 119.99825 * 359.97438 * 14 13 12 30 30 H 1.08001 * 120.00481 * 180.22827 * 15 14 13 31 31 H 1.08002 * 120.00093 * 179.71908 * 16 15 14 32 32 H 1.07998 * 120.00234 * 179.97438 * 17 16 15 33 33 H 1.08003 * 120.00118 * 359.97438 * 18 13 12 34 34 H 1.07997 * 120.78747 * 359.97438 * 20 19 9 35 35 H 1.08000 * 120.41858 * 180.02562 * 21 20 19 36 36 H 1.08001 * 119.61569 * 179.97438 * 22 21 20 37 37 H 1.08005 * 119.61426 * 180.31473 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 1.4001 5 1 1.4467 2.6527 -0.7000 6 1 3.5467 1.4400 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0843 -1.1943 0.0115 9 6 1.2510 -2.4991 -0.0178 10 1 0.3050 -2.3796 0.5104 11 7 2.0534 -3.5367 0.6435 12 6 1.8507 -3.5115 2.0983 13 6 2.6884 -4.5868 2.7410 14 6 2.1642 -5.8521 2.9279 15 6 2.9342 -6.8398 3.5130 16 6 4.2250 -6.5593 3.9206 17 6 4.7474 -5.2925 3.7385 18 6 3.9791 -4.3062 3.1486 19 6 0.9820 -2.9050 -1.4440 20 6 -0.2941 -2.7970 -1.9761 21 6 -0.4948 -3.1826 -3.2924 22 6 0.5758 -3.6592 -4.0254 23 7 1.7757 -3.7491 -3.4862 24 6 2.0045 -3.3866 -2.2390 25 1 -0.4850 -0.8362 -0.0793 26 1 1.8471 -4.4492 0.2655 27 1 2.1468 -2.5382 2.4896 28 1 0.7985 -3.6880 2.3217 29 1 1.1541 -6.0700 2.6139 30 1 2.5259 -7.8295 3.6557 31 1 4.8251 -7.3297 4.3818 32 1 5.7557 -5.0732 4.0573 33 1 4.3874 -3.3165 3.0062 34 1 -1.1121 -2.4221 -1.3789 35 1 -1.4754 -3.1117 -3.7395 36 1 0.4276 -3.9621 -5.0515 37 1 3.0020 -3.4700 -1.8334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261124976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:19 Heat of formation + Delta-G solvation = 54.608084 kcal Electronic energy + Delta-G solvation = -19384.499361 eV Core-core repulsion = 16512.046674 eV Total energy + Delta-G solvation = -2872.452687 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.49549 -38.99741 -35.99720 -33.20224 -31.65949 -31.25432 -30.69553 -29.77060 -26.37657 -24.46774 -23.21648 -22.59151 -22.35230 -20.75591 -20.67695 -16.95146 -16.74098 -16.36320 -15.65505 -15.37213 -14.96509 -14.46290 -13.96840 -13.84836 -13.57432 -13.37696 -13.22089 -12.98848 -12.38955 -12.34044 -12.25455 -12.01663 -11.67934 -11.04059 -10.89131 -10.85426 -10.58041 -10.43251 -10.16937 -9.40841 -8.94353 -8.82181 -8.73513 -8.57738 -8.50021 -8.06012 -7.49752 -6.48098 -4.22570 1.54310 1.59858 1.87673 2.03229 3.36831 3.41493 3.56732 3.97112 4.40148 4.55626 5.00000 5.05445 5.10730 5.13609 5.21834 5.27179 5.37990 5.48893 5.67004 5.71373 5.73382 5.85745 5.92324 5.98756 6.13040 6.26692 6.28626 6.40059 6.53840 6.63143 6.67505 6.71590 6.82432 6.97068 7.13898 7.20777 7.43512 7.77517 7.80239 8.27524 8.48407 8.67940 8.72437 9.46854 10.84938 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.006274 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.217954 B = 4461.769601 C = 5832.136991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.020 3.980 3 Si 1.071 2.929 4 H -0.286 1.286 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.565 4.565 8 H 0.063 0.937 9 C 0.235 3.765 10 H 0.019 0.981 11 N -0.671 5.671 12 C 0.106 3.894 13 C -0.068 4.068 14 C -0.119 4.119 15 C -0.125 4.125 16 C -0.131 4.131 17 C -0.124 4.124 18 C -0.096 4.096 19 C -0.093 4.093 20 C -0.085 4.085 21 C -0.176 4.176 22 C 0.061 3.939 23 N -0.494 5.494 24 C 0.107 3.893 25 H 0.268 0.732 26 H 0.316 0.684 27 H 0.087 0.913 28 H 0.025 0.975 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.141 0.859 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.503 -9.852 3.668 10.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.185 4.185 3 Si 0.898 3.102 4 H -0.213 1.213 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.603 4.603 8 H 0.082 0.918 9 C 0.127 3.873 10 H 0.037 0.963 11 N -0.300 5.300 12 C -0.023 4.023 13 C -0.068 4.068 14 C -0.138 4.138 15 C -0.143 4.143 16 C -0.149 4.149 17 C -0.142 4.142 18 C -0.115 4.115 19 C -0.096 4.096 20 C -0.112 4.112 21 C -0.196 4.196 22 C -0.095 4.095 23 N -0.203 5.203 24 C -0.050 4.050 25 H 0.080 0.920 26 H 0.132 0.868 27 H 0.105 0.895 28 H 0.043 0.957 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.159 0.841 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.550 -8.113 3.254 9.434 hybrid contribution -1.537 -1.599 0.368 2.248 sum 2.013 -9.712 3.622 10.559 Atomic orbital electron populations 1.70812 1.06909 1.30810 1.45572 1.25912 0.96451 1.02819 0.93320 0.83509 0.74856 0.74881 0.76909 1.21286 1.21075 1.21184 1.21897 0.94981 0.89534 1.53899 0.91829 1.18381 0.92847 0.90846 0.85240 0.96321 1.60731 1.60650 1.06886 1.01755 1.20793 0.95044 0.97190 0.89275 1.20066 0.95024 0.94699 0.97017 1.21071 0.99796 0.93080 0.99824 1.21042 0.94665 0.98858 0.99721 1.21057 0.95803 0.96828 1.01196 1.21139 0.99672 0.93505 0.99888 1.21128 0.93579 0.99658 0.97120 1.21745 0.92752 0.93960 1.01164 1.21454 0.97265 0.97230 0.95215 1.21950 1.00057 1.02065 0.95511 1.22423 0.88696 0.98945 0.99484 1.67608 1.23300 1.16171 1.13187 1.22526 0.99488 0.94589 0.88423 0.92032 0.86760 0.89452 0.95724 0.86667 0.86616 0.86672 0.86417 0.85682 0.85856 0.86085 0.84130 0.82863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.44 13.60 55.43 0.75 -24.69 16 2 C 0.02 0.54 5.46 -17.82 -0.10 0.44 16 3 Si 1.07 24.42 29.90 -169.99 -5.08 19.33 16 4 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.56 -14.68 8.31 -34.44 -0.29 -14.97 16 8 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 9 C 0.24 5.39 1.98 -70.02 -0.14 5.25 16 10 H 0.02 0.47 6.15 -51.92 -0.32 0.15 16 11 N -0.67 -13.37 5.86 -110.46 -0.65 -14.01 16 12 C 0.11 1.94 5.61 -4.97 -0.03 1.91 16 13 C -0.07 -1.07 5.39 -104.63 -0.56 -1.64 16 14 C -0.12 -1.69 9.70 -39.59 -0.38 -2.07 16 15 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 16 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 17 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 18 C -0.10 -1.45 9.70 -39.58 -0.38 -1.83 16 19 C -0.09 -2.03 4.65 -104.48 -0.49 -2.52 16 20 C -0.08 -1.74 9.42 -39.28 -0.37 -2.11 16 21 C -0.18 -3.13 10.11 -39.44 -0.40 -3.53 16 22 C 0.06 1.09 11.18 -17.54 -0.20 0.90 16 23 N -0.49 -10.03 10.36 -13.25 -0.14 -10.16 16 24 C 0.11 2.27 10.27 -17.55 -0.18 2.09 16 25 H 0.27 7.36 5.42 -40.82 -0.22 7.14 16 26 H 0.32 5.94 8.16 -39.29 -0.32 5.62 16 27 H 0.09 1.75 7.94 -51.93 -0.41 1.34 16 28 H 0.02 0.45 8.00 -51.93 -0.42 0.03 16 29 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.13 1.87 8.06 -52.48 -0.42 1.45 16 34 H 0.12 2.51 7.23 -52.49 -0.38 2.13 16 35 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.14 2.02 8.06 -52.49 -0.42 1.59 16 37 H 0.15 3.23 7.93 -52.48 -0.42 2.81 16 LS Contribution 318.02 15.07 4.79 4.79 Total: -1.00 -28.80 318.02 -9.68 -38.48 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -4.65 Total: 10.27 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -4.71 Total: -24.01 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.03 Total: -48.86 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -5.08 Total: 19.33 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.80 -9.68 -38.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261124976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.084 kcal (2) G-P(sol) polarization free energy of solvation -28.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds