Wall clock time and date at job start Mon Mar 30 2020 07:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86791 * 120.00367 * 2 1 4 4 H 1.48504 * 109.47421 * 90.00367 * 3 2 1 5 5 H 1.48505 * 109.47338 * 330.00421 * 3 2 1 6 6 H 1.48504 * 109.47418 * 210.00292 * 3 2 1 7 7 C 1.37878 * 119.99280 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99738 * 180.73657 * 7 2 1 9 9 C 1.50693 * 120.00610 * 0.73379 * 7 2 1 10 10 H 1.09008 * 109.47132 * 328.44058 * 9 7 2 11 11 N 1.46896 * 109.47562 * 208.43800 * 9 7 2 12 12 C 1.46907 * 110.99958 * 85.00088 * 11 9 7 13 13 C 1.50697 * 109.47267 * 180.02562 * 12 11 9 14 14 C 1.38233 * 120.00147 * 269.72546 * 13 12 11 15 15 C 1.38232 * 120.00408 * 179.76344 * 14 13 12 16 16 C 1.38235 * 119.99619 * 0.50941 * 15 14 13 17 17 C 1.38238 * 120.00271 * 359.74748 * 16 15 14 18 18 C 1.38235 * 120.00019 * 89.99832 * 13 12 11 19 19 C 1.50702 * 109.47065 * 88.43527 * 9 7 2 20 20 C 1.38673 * 120.42150 * 253.69835 * 19 9 7 21 21 C 1.38623 * 118.41941 * 180.02562 * 20 19 9 22 22 C 1.38234 * 119.16216 * 0.02562 * 21 20 19 23 23 N 1.31852 * 120.76216 * 0.02562 * 22 21 20 24 24 C 1.31886 * 121.72566 * 359.70600 * 23 22 21 25 25 H 0.96998 * 120.00364 * 174.57970 * 1 2 3 26 26 H 1.00902 * 111.00173 * 208.95322 * 11 9 7 27 27 H 1.09001 * 109.46776 * 300.00302 * 12 11 9 28 28 H 1.08998 * 109.47214 * 59.99822 * 12 11 9 29 29 H 1.07998 * 119.99825 * 359.97438 * 14 13 12 30 30 H 1.08001 * 120.00481 * 180.22827 * 15 14 13 31 31 H 1.08002 * 120.00093 * 179.71908 * 16 15 14 32 32 H 1.07998 * 120.00234 * 179.97438 * 17 16 15 33 33 H 1.08003 * 120.00118 * 359.97438 * 18 13 12 34 34 H 1.07997 * 120.78747 * 359.97438 * 20 19 9 35 35 H 1.08000 * 120.41858 * 180.02562 * 21 20 19 36 36 H 1.08001 * 119.61569 * 179.97438 * 22 21 20 37 37 H 1.08005 * 119.61426 * 180.31473 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 1.4001 5 1 1.4467 2.6527 -0.7000 6 1 3.5467 1.4400 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0843 -1.1943 0.0115 9 6 1.2510 -2.4991 -0.0178 10 1 0.3050 -2.3796 0.5104 11 7 2.0534 -3.5367 0.6435 12 6 1.8507 -3.5115 2.0983 13 6 2.6884 -4.5868 2.7410 14 6 2.1642 -5.8521 2.9279 15 6 2.9342 -6.8398 3.5130 16 6 4.2250 -6.5593 3.9206 17 6 4.7474 -5.2925 3.7385 18 6 3.9791 -4.3062 3.1486 19 6 0.9820 -2.9050 -1.4440 20 6 -0.2941 -2.7970 -1.9761 21 6 -0.4948 -3.1826 -3.2924 22 6 0.5758 -3.6592 -4.0254 23 7 1.7757 -3.7491 -3.4862 24 6 2.0045 -3.3866 -2.2390 25 1 -0.4850 -0.8362 -0.0793 26 1 1.8471 -4.4492 0.2655 27 1 2.1468 -2.5382 2.4896 28 1 0.7985 -3.6880 2.3217 29 1 1.1541 -6.0700 2.6139 30 1 2.5259 -7.8295 3.6557 31 1 4.8251 -7.3297 4.3818 32 1 5.7557 -5.0732 4.0573 33 1 4.3874 -3.3165 3.0062 34 1 -1.1121 -2.4221 -1.3789 35 1 -1.4754 -3.1117 -3.7395 36 1 0.4276 -3.9621 -5.0515 37 1 3.0020 -3.4700 -1.8334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261124976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:18 Heat of formation + Delta-G solvation = 38.382815 kcal Electronic energy + Delta-G solvation = -19385.202941 eV Core-core repulsion = 16512.046674 eV Total energy + Delta-G solvation = -2873.156267 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.06537 -40.13304 -37.64251 -34.90083 -33.34853 -32.74937 -31.74908 -31.16289 -28.08744 -26.14588 -24.84763 -24.14621 -23.41579 -22.42556 -21.95453 -18.89614 -18.11428 -17.63941 -17.29361 -16.72919 -16.17503 -15.76113 -15.70768 -15.40721 -15.29641 -14.90488 -14.46752 -14.25698 -13.92110 -13.84077 -13.65921 -13.50103 -13.18516 -12.79182 -12.49887 -12.38580 -11.98504 -11.87933 -11.74422 -11.22958 -10.66141 -10.55205 -10.29363 -9.79686 -9.74336 -9.63843 -9.23565 -8.55833 -6.33061 0.32343 0.41190 0.48687 0.53486 1.50721 1.58153 1.75669 2.51852 2.85471 2.98065 3.17907 3.55554 3.67910 3.91277 3.98669 4.04576 4.16152 4.19446 4.28115 4.29973 4.35259 4.42027 4.64798 4.66118 4.76662 4.80212 4.94456 5.00776 5.13956 5.19999 5.26729 5.51496 5.58850 5.63433 5.78450 5.82933 5.90984 6.00784 6.15402 6.39638 6.52253 6.79048 7.11806 7.42991 8.75823 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.006274 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.217954 B = 4461.769601 C = 5832.136991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.024 4.024 3 Si 1.109 2.891 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.571 4.571 8 H 0.047 0.953 9 C 0.244 3.756 10 H -0.009 1.009 11 N -0.668 5.668 12 C 0.114 3.886 13 C -0.089 4.089 14 C -0.128 4.128 15 C -0.123 4.123 16 C -0.124 4.124 17 C -0.124 4.124 18 C -0.116 4.116 19 C -0.113 4.113 20 C -0.099 4.099 21 C -0.165 4.165 22 C 0.068 3.932 23 N -0.505 5.505 24 C 0.098 3.902 25 H 0.261 0.739 26 H 0.324 0.676 27 H 0.059 0.941 28 H 0.020 0.980 29 H 0.121 0.879 30 H 0.146 0.854 31 H 0.150 0.850 32 H 0.142 0.858 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.161 0.839 36 H 0.186 0.814 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.033 -11.683 3.017 12.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.224 4.224 3 Si 0.932 3.068 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.609 4.609 8 H 0.066 0.934 9 C 0.135 3.865 10 H 0.009 0.991 11 N -0.298 5.298 12 C -0.015 4.015 13 C -0.089 4.089 14 C -0.147 4.147 15 C -0.140 4.140 16 C -0.142 4.142 17 C -0.142 4.142 18 C -0.135 4.135 19 C -0.116 4.116 20 C -0.126 4.126 21 C -0.184 4.184 22 C -0.089 4.089 23 N -0.214 5.214 24 C -0.058 4.058 25 H 0.072 0.928 26 H 0.141 0.859 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.139 0.861 30 H 0.164 0.836 31 H 0.168 0.832 32 H 0.160 0.840 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.179 0.821 36 H 0.203 0.797 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.096 -9.968 2.619 11.091 hybrid contribution -1.716 -1.181 0.536 2.151 sum 2.381 -11.150 3.156 11.830 Atomic orbital electron populations 1.70886 1.07566 1.30510 1.47989 1.27019 0.96628 1.05750 0.92958 0.83016 0.74207 0.71965 0.77636 1.19928 1.21165 1.20174 1.22056 0.94292 0.91195 1.53377 0.93422 1.18115 0.91327 0.90765 0.86314 0.99110 1.60623 1.59837 1.06659 1.02664 1.20641 0.95369 0.97075 0.88391 1.19867 0.95392 0.94838 0.98804 1.21200 1.00452 0.92754 1.00257 1.21409 0.94702 0.99574 0.98353 1.21499 0.95831 0.97067 0.99831 1.21430 1.00493 0.93359 0.98923 1.21173 0.93743 1.00094 0.98452 1.21579 0.93929 0.95906 1.00219 1.21597 0.96573 0.97653 0.96748 1.22345 1.02017 1.00054 0.94009 1.23185 0.87598 0.96972 1.01117 1.67653 1.24804 1.16452 1.12496 1.22376 0.98990 0.95408 0.89073 0.92773 0.85920 0.92241 0.96207 0.86141 0.83635 0.83226 0.83992 0.86871 0.86591 0.82125 0.79717 0.83684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.18 13.60 21.45 0.29 -53.89 16 2 C -0.02 -1.33 5.46 84.66 0.46 -0.86 16 3 Si 1.11 50.21 29.90 68.60 2.05 52.27 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 6 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.57 -31.02 8.31 25.60 0.21 -30.81 16 8 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 9 C 0.24 11.77 1.98 43.42 0.09 11.86 16 10 H -0.01 -0.46 6.15 -2.38 -0.01 -0.48 16 11 N -0.67 -28.10 5.86 -503.37 -2.95 -31.05 16 12 C 0.11 4.47 5.61 85.55 0.48 4.95 16 13 C -0.09 -2.90 5.39 -19.87 -0.11 -3.00 16 14 C -0.13 -3.55 9.70 22.27 0.22 -3.34 16 15 C -0.12 -2.75 10.05 22.27 0.22 -2.52 16 16 C -0.12 -2.61 10.05 22.27 0.22 -2.39 16 17 C -0.12 -2.99 10.05 22.27 0.22 -2.77 16 18 C -0.12 -3.55 9.70 22.27 0.22 -3.33 16 19 C -0.11 -5.06 4.65 -19.77 -0.09 -5.16 16 20 C -0.10 -4.05 9.42 22.47 0.21 -3.84 16 21 C -0.16 -5.44 10.11 22.36 0.23 -5.22 16 22 C 0.07 2.23 11.18 84.69 0.95 3.18 16 23 N -0.51 -19.77 10.36 -195.83 -2.03 -21.79 16 24 C 0.10 4.19 10.27 84.67 0.87 5.06 16 25 H 0.26 15.04 5.42 -92.71 -0.50 14.53 16 26 H 0.32 12.70 8.16 -89.69 -0.73 11.97 16 27 H 0.06 2.61 7.94 -2.39 -0.02 2.59 16 28 H 0.02 0.78 8.00 -2.39 -0.02 0.76 16 29 H 0.12 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 31 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 32 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 33 H 0.11 3.60 8.06 -2.91 -0.02 3.58 16 34 H 0.12 4.85 7.23 -2.91 -0.02 4.83 16 35 H 0.16 4.01 8.06 -2.91 -0.02 3.98 16 36 H 0.19 4.37 8.06 -2.91 -0.02 4.35 16 37 H 0.15 6.30 7.93 -2.91 -0.02 6.28 16 Total: -1.00 -64.24 318.02 2.36 -61.88 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: 0.60 Total: 30.78 kcal Atomic # 6 Polarization: -42.59 SS G_CDS: 4.40 Total: -38.19 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -4.69 Total: -106.73 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 2.05 Total: 52.27 kcal Total: -64.24 2.36 -61.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261124976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.259 kcal (2) G-P(sol) polarization free energy of solvation -64.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds