Wall clock time and date at job start Mon Mar 30 2020 06:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00412 * 2 1 4 4 H 1.48501 * 109.47145 * 240.00123 * 3 2 1 5 5 H 1.48503 * 109.47008 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47287 * 119.99986 * 3 2 1 7 7 C 1.37877 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00341 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99881 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.46836 * 60.00416 * 9 7 2 11 11 C 1.52993 * 109.47541 * 300.00303 * 9 7 2 12 12 C 1.52993 * 109.47455 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.46908 * 60.00115 * 12 11 9 14 14 C 1.52999 * 109.47323 * 299.99842 * 13 12 11 15 15 H 1.09007 * 109.46776 * 300.00543 * 14 13 12 16 16 C 1.52995 * 109.47571 * 180.02562 * 14 13 12 17 17 C 1.53006 * 109.47234 * 64.99839 * 16 14 13 18 18 H 1.09001 * 109.47002 * 55.00002 * 17 16 14 19 19 F 1.39903 * 109.46814 * 295.00546 * 17 16 14 20 20 C 1.52997 * 109.47164 * 175.00265 * 17 16 14 21 21 F 1.39900 * 109.47435 * 60.00221 * 20 17 16 22 22 F 1.39905 * 109.46849 * 180.02562 * 20 17 16 23 23 F 1.39903 * 109.46784 * 299.99983 * 20 17 16 24 24 C 1.53002 * 109.46954 * 179.97438 * 9 7 2 25 25 H 0.97000 * 119.99236 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47182 * 59.99666 * 11 9 7 27 27 H 1.08998 * 109.47072 * 300.00138 * 11 9 7 28 28 H 1.08998 * 109.47301 * 299.99674 * 12 11 9 29 29 H 1.09002 * 109.47510 * 179.97438 * 12 11 9 30 30 H 1.09009 * 109.47055 * 179.97438 * 13 12 11 31 31 H 1.08994 * 109.47325 * 60.00419 * 13 12 11 32 32 H 1.09007 * 109.46945 * 305.00341 * 16 14 13 33 33 H 1.08995 * 109.47339 * 184.99639 * 16 14 13 34 34 H 1.09007 * 109.46796 * 60.00653 * 24 9 7 35 35 H 1.08995 * 109.47789 * 300.00309 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8904 11 6 0.3717 -2.5805 1.2489 12 6 -0.3938 -3.9052 1.2486 13 6 0.6001 -5.0685 1.2477 14 6 1.4793 -4.9872 -0.0018 15 1 0.8522 -5.0443 -0.8916 16 6 2.4727 -6.1508 -0.0031 17 6 1.7109 -7.4717 -0.1294 18 1 1.0757 -7.4415 -1.0147 19 9 0.9178 -7.6631 1.0072 20 6 2.7078 -8.6253 -0.2560 21 9 3.5230 -8.6641 0.8803 22 9 2.0111 -9.8330 -0.3721 23 9 3.5008 -8.4337 -1.3925 24 6 2.2452 -3.6621 -0.0018 25 1 -0.4849 0.8401 -0.0004 26 1 -0.3365 -1.7520 1.2494 27 1 0.9987 -2.5230 2.1387 28 1 -1.0208 -3.9623 0.3588 29 1 -1.0198 -3.9633 2.1390 30 1 0.0547 -6.0123 1.2479 31 1 1.2270 -5.0114 2.1375 32 1 3.0392 -6.1458 0.9282 33 1 3.1565 -6.0439 -0.8451 34 1 2.8725 -3.6048 0.8878 35 1 2.8712 -3.6041 -0.8922 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261131745.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:24 Heat of formation + Delta-G solvation = -237.683414 kcal Electronic energy + Delta-G solvation = -21424.533964 eV Core-core repulsion = 17534.487850 eV Total energy + Delta-G solvation = -3890.046113 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.46022 -48.36819 -47.85899 -47.65325 -38.01696 -34.00568 -32.33448 -29.92666 -29.47394 -25.55353 -24.79207 -22.48649 -21.21181 -20.44964 -19.04019 -18.76771 -18.54034 -18.12355 -16.50983 -16.17123 -15.43024 -14.80577 -14.63973 -14.62010 -14.38993 -14.27364 -13.99921 -13.99186 -13.87627 -13.36080 -13.11681 -12.87281 -12.31301 -12.07009 -11.84382 -11.38860 -11.20338 -10.98337 -10.89110 -10.63756 -10.35389 -10.18410 -9.93878 -9.75847 -9.33693 -8.86687 -8.60795 -8.26070 -5.96046 -4.02539 2.27806 3.32386 3.32538 3.37310 3.39788 3.61649 3.69208 4.31648 4.44361 4.49466 4.70157 5.18455 5.31947 5.34439 5.55873 5.79880 5.89058 6.08180 6.22884 6.40332 6.45152 6.52699 6.67730 6.74543 6.84151 6.97442 7.15835 7.30244 7.56249 7.77754 8.04047 8.19135 8.49109 9.01483 9.62022 11.09220 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.037768 B = 0.004375 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.190358 B = 6397.761371 C = 6845.063127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.051 3.949 10 H 0.024 0.976 11 C -0.111 4.111 12 C -0.118 4.118 13 C -0.125 4.125 14 C -0.083 4.083 15 H 0.069 0.931 16 C -0.148 4.148 17 C 0.060 3.940 18 H 0.128 0.872 19 F -0.172 7.172 20 C 0.429 3.571 21 F -0.174 7.174 22 F -0.179 7.179 23 F -0.173 7.173 24 C -0.100 4.100 25 H 0.259 0.741 26 H 0.089 0.911 27 H 0.031 0.969 28 H 0.050 0.950 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.708 -15.866 -0.579 16.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.032 3.968 10 H 0.042 0.958 11 C -0.149 4.149 12 C -0.156 4.156 13 C -0.162 4.162 14 C -0.101 4.101 15 H 0.087 0.913 16 C -0.185 4.185 17 C 0.023 3.977 18 H 0.146 0.854 19 F -0.152 7.152 20 C 0.374 3.626 21 F -0.155 7.155 22 F -0.161 7.161 23 F -0.154 7.154 24 C -0.137 4.137 25 H 0.069 0.931 26 H 0.107 0.893 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.558 -15.769 -0.550 15.985 hybrid contribution 0.618 0.654 0.073 0.902 sum 3.176 -15.116 -0.476 15.453 Atomic orbital electron populations 1.69873 1.05846 1.26369 1.50837 1.24956 0.94819 0.98948 0.95215 0.86719 0.79649 0.83415 0.78551 1.20361 1.21355 1.20365 1.21188 0.92802 0.90805 1.50421 0.92909 1.18622 0.92557 0.91226 0.94380 0.95801 1.21617 0.99496 0.95222 0.98558 1.21612 0.97460 0.96693 0.99833 1.21920 0.98075 0.99193 0.97034 1.21218 0.95775 0.94010 0.99099 0.91298 1.22449 0.99522 0.91354 1.05199 1.22923 0.91376 0.93736 0.89696 0.85409 1.92865 1.74379 1.95532 1.52450 1.21269 0.82382 0.84628 0.74332 1.93218 1.74591 1.96662 1.51067 1.93216 1.78713 1.48417 1.95711 1.93211 1.75717 1.95047 1.51427 1.21662 0.98569 0.93268 1.00213 0.93057 0.89290 0.94967 0.93161 0.94010 0.91555 0.92688 0.89414 0.88889 0.93214 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.18 11.32 55.43 0.63 -24.55 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -13.86 8.56 -34.44 -0.29 -14.15 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.05 1.21 2.10 -91.77 -0.19 1.02 16 10 H 0.02 0.62 8.14 -51.92 -0.42 0.20 16 11 C -0.11 -2.56 4.98 -26.74 -0.13 -2.70 16 12 C -0.12 -2.24 5.92 -26.73 -0.16 -2.40 16 13 C -0.12 -2.04 4.66 -26.73 -0.12 -2.16 16 14 C -0.08 -1.29 2.19 -90.60 -0.20 -1.49 16 15 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 16 C -0.15 -1.82 4.32 -26.73 -0.12 -1.94 16 17 C 0.06 0.66 3.25 -26.73 -0.09 0.57 16 18 H 0.13 1.12 8.14 -51.93 -0.42 0.69 16 19 F -0.17 -2.19 13.86 2.25 0.03 -2.16 16 20 C 0.43 4.72 2.91 37.16 0.11 4.83 16 21 F -0.17 -2.11 16.87 2.25 0.04 -2.07 16 22 F -0.18 -2.04 17.30 2.25 0.04 -2.00 16 23 F -0.17 -1.88 16.71 2.25 0.04 -1.84 16 24 C -0.10 -1.93 4.43 -26.70 -0.12 -2.05 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.99 5.43 -51.92 -0.28 0.70 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 1.11 7.94 -51.93 -0.41 0.69 16 33 H 0.09 1.04 7.66 -51.93 -0.40 0.64 16 34 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 291.98 15.07 4.40 4.40 Total: -1.00 -27.70 291.98 -6.01 -33.71 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -4.75 Total: -2.70 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -1.41 Total: -18.87 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.63 Total: -24.55 kcal Atomic # 9 Polarization: -8.22 SS G_CDS: 0.15 Total: -8.07 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.70 -6.01 -33.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131745.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.972 kcal (2) G-P(sol) polarization free energy of solvation -27.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds