Wall clock time and date at job start Mon Mar 30 2020 06:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00412 * 2 1 4 4 H 1.48501 * 109.47145 * 240.00123 * 3 2 1 5 5 H 1.48503 * 109.47008 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47287 * 119.99986 * 3 2 1 7 7 C 1.37877 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00341 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99881 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.46836 * 60.00416 * 9 7 2 11 11 C 1.52993 * 109.47541 * 300.00303 * 9 7 2 12 12 C 1.52993 * 109.47455 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.46908 * 60.00115 * 12 11 9 14 14 C 1.52999 * 109.47323 * 299.99842 * 13 12 11 15 15 H 1.09007 * 109.46776 * 300.00543 * 14 13 12 16 16 C 1.52995 * 109.47571 * 180.02562 * 14 13 12 17 17 C 1.53006 * 109.47234 * 64.99839 * 16 14 13 18 18 H 1.09001 * 109.47002 * 55.00002 * 17 16 14 19 19 F 1.39903 * 109.46814 * 295.00546 * 17 16 14 20 20 C 1.52997 * 109.47164 * 175.00265 * 17 16 14 21 21 F 1.39900 * 109.47435 * 60.00221 * 20 17 16 22 22 F 1.39905 * 109.46849 * 180.02562 * 20 17 16 23 23 F 1.39903 * 109.46784 * 299.99983 * 20 17 16 24 24 C 1.53002 * 109.46954 * 179.97438 * 9 7 2 25 25 H 0.97000 * 119.99236 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47182 * 59.99666 * 11 9 7 27 27 H 1.08998 * 109.47072 * 300.00138 * 11 9 7 28 28 H 1.08998 * 109.47301 * 299.99674 * 12 11 9 29 29 H 1.09002 * 109.47510 * 179.97438 * 12 11 9 30 30 H 1.09009 * 109.47055 * 179.97438 * 13 12 11 31 31 H 1.08994 * 109.47325 * 60.00419 * 13 12 11 32 32 H 1.09007 * 109.46945 * 305.00341 * 16 14 13 33 33 H 1.08995 * 109.47339 * 184.99639 * 16 14 13 34 34 H 1.09007 * 109.46796 * 60.00653 * 24 9 7 35 35 H 1.08995 * 109.47789 * 300.00309 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8904 11 6 0.3717 -2.5805 1.2489 12 6 -0.3938 -3.9052 1.2486 13 6 0.6001 -5.0685 1.2477 14 6 1.4793 -4.9872 -0.0018 15 1 0.8522 -5.0443 -0.8916 16 6 2.4727 -6.1508 -0.0031 17 6 1.7109 -7.4717 -0.1294 18 1 1.0757 -7.4415 -1.0147 19 9 0.9178 -7.6631 1.0072 20 6 2.7078 -8.6253 -0.2560 21 9 3.5230 -8.6641 0.8803 22 9 2.0111 -9.8330 -0.3721 23 9 3.5008 -8.4337 -1.3925 24 6 2.2452 -3.6621 -0.0018 25 1 -0.4849 0.8401 -0.0004 26 1 -0.3365 -1.7520 1.2494 27 1 0.9987 -2.5230 2.1387 28 1 -1.0208 -3.9623 0.3588 29 1 -1.0198 -3.9633 2.1390 30 1 0.0547 -6.0123 1.2479 31 1 1.2270 -5.0114 2.1375 32 1 3.0392 -6.1458 0.9282 33 1 3.1565 -6.0439 -0.8451 34 1 2.8725 -3.6048 0.8878 35 1 2.8712 -3.6041 -0.8922 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261131745.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:23 Heat of formation + Delta-G solvation = -250.662528 kcal Electronic energy + Delta-G solvation = -21425.096780 eV Core-core repulsion = 17534.487850 eV Total energy + Delta-G solvation = -3890.608930 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -51.32504 -49.26555 -48.73400 -48.53128 -39.52625 -35.54855 -33.96466 -31.56813 -30.85614 -26.82684 -26.62053 -23.51023 -22.81795 -21.83192 -20.46029 -19.78450 -19.46443 -19.07050 -18.22254 -17.40326 -16.64249 -16.40633 -15.75337 -15.49848 -15.43693 -15.28207 -15.12852 -14.89027 -14.85433 -14.74281 -14.65338 -14.48294 -13.82576 -13.55414 -13.22515 -12.82225 -12.71712 -12.50505 -12.38779 -12.21007 -11.92915 -11.69334 -11.57967 -11.49960 -11.12019 -10.57433 -10.45528 -10.23933 -8.04455 -6.18446 1.41453 1.42487 1.43046 1.50510 2.44725 2.47736 2.74394 2.83932 3.21687 3.41245 3.65039 3.76551 4.02170 4.12415 4.24732 4.56499 4.64434 4.74367 4.87670 4.88917 4.94909 5.02057 5.12909 5.23707 5.25524 5.51640 5.53319 5.55664 5.67670 5.77963 6.09356 6.25686 6.45599 6.95298 7.49491 8.98694 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.037768 B = 0.004375 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.190358 B = 6397.761371 C = 6845.063127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.012 3.988 3 Si 0.949 3.051 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.050 0.950 9 C 0.045 3.955 10 H -0.005 1.005 11 C -0.105 4.105 12 C -0.113 4.113 13 C -0.119 4.119 14 C -0.077 4.077 15 H 0.075 0.925 16 C -0.141 4.141 17 C 0.062 3.938 18 H 0.157 0.843 19 F -0.181 7.181 20 C 0.434 3.566 21 F -0.182 7.182 22 F -0.180 7.180 23 F -0.171 7.171 24 C -0.092 4.092 25 H 0.259 0.741 26 H 0.052 0.948 27 H 0.021 0.979 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.045 0.955 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.382 -17.163 -0.819 17.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.775 3.225 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.068 0.932 9 C 0.027 3.973 10 H 0.013 0.987 11 C -0.143 4.143 12 C -0.151 4.151 13 C -0.156 4.156 14 C -0.095 4.095 15 H 0.094 0.906 16 C -0.178 4.178 17 C 0.025 3.975 18 H 0.174 0.826 19 F -0.162 7.162 20 C 0.380 3.620 21 F -0.163 7.163 22 F -0.162 7.162 23 F -0.152 7.152 24 C -0.130 4.130 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.127 0.873 34 H 0.064 0.936 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.242 -17.077 -0.790 17.400 hybrid contribution 0.405 1.080 0.141 1.162 sum 3.648 -15.997 -0.649 16.420 Atomic orbital electron populations 1.70021 1.07112 1.26927 1.51604 1.25712 0.95617 1.02222 0.95063 0.85762 0.78489 0.79538 0.78759 1.19633 1.21126 1.19870 1.21634 0.93000 0.92528 1.50144 0.93157 1.18617 0.93144 0.92232 0.93348 0.98703 1.21440 0.98742 0.96505 0.97644 1.21533 0.97814 0.95444 1.00291 1.21899 0.97606 0.98771 0.97297 1.21085 0.96072 0.93250 0.99098 0.90643 1.22305 0.98868 0.90677 1.05989 1.22995 0.91478 0.92685 0.90317 0.82604 1.92838 1.74623 1.95493 1.53197 1.21191 0.82172 0.84553 0.74121 1.93209 1.74856 1.96693 1.51546 1.93217 1.78735 1.48513 1.95701 1.93220 1.75681 1.95022 1.51274 1.21500 0.97673 0.93665 1.00151 0.93233 0.92955 0.96008 0.93406 0.92874 0.89203 0.92875 0.89506 0.87345 0.93633 0.93104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.18 11.32 21.45 0.24 -52.94 16 2 C 0.01 0.68 5.30 84.65 0.45 1.13 16 3 Si 0.95 43.65 29.54 68.60 2.03 45.67 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.53 -29.32 8.56 25.60 0.22 -29.10 16 8 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 9 C 0.04 2.20 2.10 -11.54 -0.02 2.17 16 10 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 11 C -0.11 -4.96 4.98 30.59 0.15 -4.80 16 12 C -0.11 -4.21 5.92 30.59 0.18 -4.03 16 13 C -0.12 -3.62 4.66 30.59 0.14 -3.47 16 14 C -0.08 -2.23 2.19 -10.78 -0.02 -2.26 16 15 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 16 C -0.14 -3.06 4.32 30.59 0.13 -2.93 16 17 C 0.06 1.16 3.25 30.60 0.10 1.26 16 18 H 0.16 2.07 8.14 -2.39 -0.02 2.05 16 19 F -0.18 -4.03 13.86 44.97 0.62 -3.41 16 20 C 0.43 8.33 2.91 71.98 0.21 8.54 16 21 F -0.18 -3.98 16.87 44.97 0.76 -3.22 16 22 F -0.18 -3.63 17.30 44.97 0.78 -2.85 16 23 F -0.17 -3.23 16.71 44.97 0.75 -2.47 16 24 C -0.09 -3.51 4.43 30.61 0.14 -3.37 16 25 H 0.26 14.37 8.31 -92.71 -0.77 13.59 16 26 H 0.05 2.84 6.07 -2.39 -0.01 2.82 16 27 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.09 2.38 5.43 -2.38 -0.01 2.37 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.09 1.94 7.94 -2.38 -0.02 1.93 16 33 H 0.11 2.07 7.66 -2.39 -0.02 2.05 16 34 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -60.14 291.98 7.94 -52.20 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: 1.09 Total: 3.89 kcal Atomic # 6 Polarization: -38.54 SS G_CDS: 1.67 Total: -36.86 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.24 Total: -52.94 kcal Atomic # 9 Polarization: -14.87 SS G_CDS: 2.91 Total: -11.96 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -60.14 7.94 -52.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131745.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.463 kcal (2) G-P(sol) polarization free energy of solvation -60.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds