Wall clock time and date at job start Mon Mar 30 2020 06:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 11 11 C 1.53001 * 109.47030 * 299.99649 * 9 7 2 12 12 C 1.52997 * 109.47247 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.47117 * 59.99827 * 12 11 9 14 14 C 1.52991 * 109.47244 * 300.00306 * 13 12 11 15 15 H 1.09003 * 109.47633 * 300.00191 * 14 13 12 16 16 C 1.53000 * 109.47368 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.46643 * 64.99842 * 16 14 13 18 18 H 1.08991 * 109.47362 * 305.00448 * 17 16 14 19 19 F 1.39899 * 109.46924 * 65.00887 * 17 16 14 20 20 C 1.53007 * 109.46871 * 185.00108 * 17 16 14 21 21 F 1.39898 * 109.47185 * 60.00298 * 20 17 16 22 22 F 1.39896 * 109.46758 * 180.02562 * 20 17 16 23 23 F 1.39901 * 109.47021 * 300.00061 * 20 17 16 24 24 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 25 25 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47372 * 300.00732 * 11 9 7 27 27 H 1.09002 * 109.47140 * 60.00440 * 11 9 7 28 28 H 1.08994 * 109.47327 * 180.02562 * 12 11 9 29 29 H 1.09008 * 109.46933 * 300.00487 * 12 11 9 30 30 H 1.08995 * 109.46530 * 60.00194 * 13 12 11 31 31 H 1.09002 * 109.47051 * 180.02562 * 13 12 11 32 32 H 1.08992 * 109.47461 * 184.99754 * 16 14 13 33 33 H 1.09006 * 109.47134 * 305.00638 * 16 14 13 34 34 H 1.09004 * 109.47139 * 299.99623 * 24 9 7 35 35 H 1.08997 * 109.47675 * 60.00023 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8746 -0.6799 0.8911 11 6 4.0221 -0.4731 -1.2481 12 6 5.5520 -0.4735 -1.2479 13 6 6.0616 -1.9162 -1.2476 14 6 5.5512 -2.6371 0.0016 15 1 5.9144 -2.1233 0.8916 16 6 6.0602 -4.0799 0.0016 17 6 7.5851 -4.0826 0.1272 18 1 8.0160 -3.4697 -0.6643 19 9 7.9512 -3.5611 1.3727 20 6 8.1045 -5.5164 0.0022 21 9 7.7384 -6.0381 -1.2432 22 9 9.4987 -5.5189 0.1176 23 9 7.5514 -6.3031 1.0182 24 6 4.0216 -2.6365 0.0010 25 1 -0.4850 0.8400 -0.0004 26 1 3.6590 -0.9870 -2.1381 27 1 3.6587 0.5546 -1.2485 28 1 5.9157 0.0405 -2.1376 29 1 5.9154 0.0403 -0.3578 30 1 5.6982 -2.4299 -2.1376 31 1 7.1516 -1.9165 -1.2470 32 1 5.6254 -4.6187 0.8433 33 1 5.7716 -4.5671 -0.9299 34 1 3.6579 -3.1505 0.8908 35 1 3.6587 -3.1502 -0.8892 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261131748.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:30 Heat of formation + Delta-G solvation = -234.047421 kcal Electronic energy + Delta-G solvation = -21458.252876 eV Core-core repulsion = 17568.364431 eV Total energy + Delta-G solvation = -3889.888445 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.50554 -48.36445 -47.90467 -47.67470 -38.45535 -34.21584 -32.37494 -30.34669 -29.91655 -25.89032 -24.84016 -22.72695 -21.48394 -20.35006 -19.17794 -18.97850 -18.61249 -18.20549 -16.55742 -16.47168 -15.47332 -15.23265 -14.71985 -14.66702 -14.39862 -14.31192 -14.09151 -14.03415 -14.02314 -13.63772 -13.52353 -13.08689 -12.80141 -12.13984 -12.00019 -11.85719 -11.39020 -11.18421 -11.04753 -10.84652 -10.47001 -10.42520 -9.99885 -9.85396 -9.56143 -9.03666 -8.86085 -8.51372 -6.06777 -4.05614 2.22170 3.26836 3.27427 3.38037 3.40289 3.54937 3.63557 4.22588 4.39930 4.41530 4.61817 5.00599 5.08728 5.25199 5.28112 5.56006 5.61763 5.79068 5.95697 6.06750 6.12273 6.13828 6.26368 6.35265 6.47455 6.62062 6.77209 6.88879 6.99091 7.26191 7.56492 7.78848 8.53046 8.97573 9.56281 11.06650 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.038457 B = 0.004620 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.911777 B = 6059.607081 C = 6286.092341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.265 1.265 6 H -0.299 1.299 7 C -0.513 4.513 8 H 0.073 0.927 9 C 0.015 3.985 10 H 0.026 0.974 11 C -0.121 4.121 12 C -0.122 4.122 13 C -0.113 4.113 14 C -0.089 4.089 15 H 0.076 0.924 16 C -0.147 4.147 17 C 0.056 3.944 18 H 0.130 0.870 19 F -0.177 7.177 20 C 0.429 3.571 21 F -0.172 7.172 22 F -0.179 7.179 23 F -0.173 7.173 24 C -0.089 4.089 25 H 0.263 0.737 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.313 -8.272 -1.906 19.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.190 1.190 6 H -0.227 1.227 7 C -0.551 4.551 8 H 0.091 0.909 9 C -0.004 4.004 10 H 0.044 0.956 11 C -0.158 4.158 12 C -0.159 4.159 13 C -0.150 4.150 14 C -0.107 4.107 15 H 0.094 0.906 16 C -0.185 4.185 17 C 0.019 3.981 18 H 0.147 0.853 19 F -0.158 7.158 20 C 0.374 3.626 21 F -0.153 7.153 22 F -0.160 7.160 23 F -0.155 7.155 24 C -0.127 4.127 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 17.169 -8.191 -1.870 19.114 hybrid contribution 0.533 0.733 -0.017 0.907 sum 17.702 -7.457 -1.886 19.301 Atomic orbital electron populations 1.69904 1.06317 1.26883 1.51057 1.25031 0.94664 0.99057 0.94532 0.86835 0.79913 0.83609 0.77790 1.20710 1.19022 1.22684 1.21074 0.88947 0.94390 1.50659 0.90930 1.19131 0.96413 0.91627 0.93226 0.95606 1.21985 0.92320 1.00188 1.01351 1.21592 0.98130 0.95513 1.00687 1.21634 0.98484 0.96912 0.97963 1.21256 0.98685 0.91814 0.98970 0.90596 1.22418 0.89177 1.01448 1.05412 1.22964 1.00387 0.88823 0.85953 0.85260 1.92934 1.92943 1.86821 1.43071 1.21230 0.76045 0.90935 0.74365 1.93212 1.91335 1.88408 1.42380 1.93215 1.30104 1.97010 1.95690 1.93223 1.85113 1.77089 1.60055 1.21448 0.90438 0.99480 1.01327 0.92731 0.92209 0.93710 0.93103 0.92631 0.91721 0.93308 0.89129 0.88674 0.92511 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 2 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 3 Si 0.89 21.82 24.37 -169.99 -4.14 17.68 16 4 H -0.28 -6.70 6.87 56.52 0.39 -6.31 16 5 H -0.27 -6.22 6.53 56.52 0.37 -5.86 16 6 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 7 C -0.51 -14.05 9.14 -34.44 -0.31 -14.37 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C 0.01 0.33 1.70 -91.77 -0.16 0.17 16 10 H 0.03 0.60 7.20 -51.93 -0.37 0.23 16 11 C -0.12 -2.47 4.68 -26.73 -0.13 -2.60 16 12 C -0.12 -1.96 5.92 -26.73 -0.16 -2.12 16 13 C -0.11 -1.51 4.96 -26.73 -0.13 -1.64 16 14 C -0.09 -1.27 2.15 -90.64 -0.19 -1.46 16 15 H 0.08 1.14 7.82 -51.93 -0.41 0.73 16 16 C -0.15 -1.69 4.21 -26.73 -0.11 -1.80 16 17 C 0.06 0.58 3.16 -26.73 -0.08 0.50 16 18 H 0.13 1.08 6.34 -51.93 -0.33 0.75 16 19 F -0.18 -2.20 16.64 2.25 0.04 -2.16 16 20 C 0.43 4.55 2.91 37.16 0.11 4.66 16 21 F -0.17 -1.79 16.71 2.25 0.04 -1.75 16 22 F -0.18 -1.97 17.30 2.25 0.04 -1.93 16 23 F -0.17 -2.04 16.87 2.25 0.04 -2.00 16 24 C -0.09 -1.62 4.42 -26.75 -0.12 -1.74 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.04 0.99 3.27 -51.93 -0.17 0.82 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.53 6.46 -51.93 -0.34 0.20 16 32 H 0.09 1.06 7.94 -51.93 -0.41 0.64 16 33 H 0.09 0.99 7.66 -51.93 -0.40 0.59 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 286.90 15.07 4.32 4.32 Total: -1.00 -29.37 286.90 -4.84 -34.21 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -4.56 Total: -3.08 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -1.39 Total: -18.54 kcal Atomic # 7 Polarization: -27.52 SS G_CDS: 0.77 Total: -26.74 kcal Atomic # 9 Polarization: -8.00 SS G_CDS: 0.15 Total: -7.85 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.14 Total: 17.68 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.37 -4.84 -34.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131748.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.839 kcal (2) G-P(sol) polarization free energy of solvation -29.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds