Wall clock time and date at job start Mon Mar 30 2020 06:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 11 11 C 1.53001 * 109.47030 * 299.99649 * 9 7 2 12 12 C 1.52997 * 109.47247 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.47117 * 59.99827 * 12 11 9 14 14 C 1.52991 * 109.47244 * 300.00306 * 13 12 11 15 15 H 1.09003 * 109.47633 * 300.00191 * 14 13 12 16 16 C 1.53000 * 109.47368 * 179.97438 * 14 13 12 17 17 C 1.53003 * 109.46643 * 64.99842 * 16 14 13 18 18 H 1.08991 * 109.47362 * 305.00448 * 17 16 14 19 19 F 1.39899 * 109.46924 * 65.00887 * 17 16 14 20 20 C 1.53007 * 109.46871 * 185.00108 * 17 16 14 21 21 F 1.39898 * 109.47185 * 60.00298 * 20 17 16 22 22 F 1.39896 * 109.46758 * 180.02562 * 20 17 16 23 23 F 1.39901 * 109.47021 * 300.00061 * 20 17 16 24 24 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 25 25 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47372 * 300.00732 * 11 9 7 27 27 H 1.09002 * 109.47140 * 60.00440 * 11 9 7 28 28 H 1.08994 * 109.47327 * 180.02562 * 12 11 9 29 29 H 1.09008 * 109.46933 * 300.00487 * 12 11 9 30 30 H 1.08995 * 109.46530 * 60.00194 * 13 12 11 31 31 H 1.09002 * 109.47051 * 180.02562 * 13 12 11 32 32 H 1.08992 * 109.47461 * 184.99754 * 16 14 13 33 33 H 1.09006 * 109.47134 * 305.00638 * 16 14 13 34 34 H 1.09004 * 109.47139 * 299.99623 * 24 9 7 35 35 H 1.08997 * 109.47675 * 60.00023 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8746 -0.6799 0.8911 11 6 4.0221 -0.4731 -1.2481 12 6 5.5520 -0.4735 -1.2479 13 6 6.0616 -1.9162 -1.2476 14 6 5.5512 -2.6371 0.0016 15 1 5.9144 -2.1233 0.8916 16 6 6.0602 -4.0799 0.0016 17 6 7.5851 -4.0826 0.1272 18 1 8.0160 -3.4697 -0.6643 19 9 7.9512 -3.5611 1.3727 20 6 8.1045 -5.5164 0.0022 21 9 7.7384 -6.0381 -1.2432 22 9 9.4987 -5.5189 0.1176 23 9 7.5514 -6.3031 1.0182 24 6 4.0216 -2.6365 0.0010 25 1 -0.4850 0.8400 -0.0004 26 1 3.6590 -0.9870 -2.1381 27 1 3.6587 0.5546 -1.2485 28 1 5.9157 0.0405 -2.1376 29 1 5.9154 0.0403 -0.3578 30 1 5.6982 -2.4299 -2.1376 31 1 7.1516 -1.9165 -1.2470 32 1 5.6254 -4.6187 0.8433 33 1 5.7716 -4.5671 -0.9299 34 1 3.6579 -3.1505 0.8908 35 1 3.6587 -3.1502 -0.8892 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261131748.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:29 Heat of formation + Delta-G solvation = -250.450442 kcal Electronic energy + Delta-G solvation = -21458.964164 eV Core-core repulsion = 17568.364431 eV Total energy + Delta-G solvation = -3890.599733 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.33302 -49.21165 -48.74776 -48.51588 -39.80157 -35.64692 -34.13873 -31.89403 -31.11182 -27.00772 -26.62588 -23.72466 -22.85432 -21.71010 -20.56251 -19.80740 -19.50122 -19.11555 -18.57853 -17.33475 -16.95284 -16.38196 -15.69445 -15.51903 -15.47118 -15.29426 -15.14716 -15.01612 -14.92385 -14.86333 -14.82056 -14.75893 -14.44593 -13.51688 -13.32416 -12.95944 -12.75996 -12.62049 -12.46384 -12.14806 -11.88366 -11.77182 -11.62948 -11.55585 -11.12344 -10.88452 -10.53979 -10.50127 -8.28449 -6.31162 1.30311 1.36236 1.40575 1.46899 2.33752 2.46538 2.71786 2.82318 3.07819 3.37857 3.59133 3.74671 3.90860 4.02371 4.13218 4.42956 4.49409 4.58518 4.72470 4.73765 4.85482 4.90655 4.92847 4.99196 5.15019 5.30056 5.42364 5.44245 5.49826 5.65059 5.75203 5.87598 6.34988 6.77466 7.34637 8.88732 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.038457 B = 0.004620 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.911777 B = 6059.607081 C = 6286.092341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.008 3.992 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.246 1.246 6 H -0.304 1.304 7 C -0.517 4.517 8 H 0.031 0.969 9 C 0.011 3.989 10 H 0.018 0.982 11 C -0.122 4.122 12 C -0.119 4.119 13 C -0.111 4.111 14 C -0.081 4.081 15 H 0.071 0.929 16 C -0.143 4.143 17 C 0.060 3.940 18 H 0.160 0.840 19 F -0.189 7.189 20 C 0.432 3.568 21 F -0.169 7.169 22 F -0.180 7.180 23 F -0.183 7.183 24 C -0.086 4.086 25 H 0.264 0.736 26 H 0.054 0.946 27 H 0.027 0.973 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.110 0.890 34 H 0.043 0.957 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.515 -7.959 -2.828 22.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.170 1.170 6 H -0.232 1.232 7 C -0.555 4.555 8 H 0.049 0.951 9 C -0.008 4.008 10 H 0.036 0.964 11 C -0.159 4.159 12 C -0.156 4.156 13 C -0.148 4.148 14 C -0.099 4.099 15 H 0.089 0.911 16 C -0.181 4.181 17 C 0.023 3.977 18 H 0.178 0.822 19 F -0.169 7.169 20 C 0.378 3.622 21 F -0.151 7.151 22 F -0.162 7.162 23 F -0.165 7.165 24 C -0.123 4.123 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.045 0.955 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.129 0.871 34 H 0.062 0.938 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 20.398 -7.897 -2.794 22.051 hybrid contribution -0.553 0.527 0.288 0.816 sum 19.845 -7.370 -2.506 21.317 Atomic orbital electron populations 1.70066 1.08298 1.27861 1.53341 1.25915 0.95377 1.03100 0.94450 0.85790 0.79079 0.78639 0.78546 1.19317 1.16993 1.23199 1.21497 0.92067 0.92701 1.49255 0.95088 1.19123 0.92863 0.94696 0.94077 0.96436 1.21885 0.96054 0.98423 0.99564 1.21572 0.94244 0.97839 1.01951 1.21675 1.00801 0.94852 0.97496 1.21092 0.95192 0.93919 0.99697 0.91079 1.22310 0.90188 0.99439 1.06118 1.23059 0.99391 0.89026 0.86191 0.82241 1.92918 1.92964 1.86952 1.44077 1.21230 0.75906 0.90895 0.74194 1.93222 1.91291 1.88415 1.42126 1.93215 1.30237 1.97006 1.95697 1.93210 1.85257 1.77437 1.60565 1.21331 0.93898 0.96477 1.00636 0.92752 0.92720 0.95484 0.90692 0.92540 0.90690 0.89449 0.89748 0.87141 0.93827 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 2 C 0.01 0.46 5.45 84.65 0.46 0.92 16 3 Si 0.95 45.36 24.37 68.60 1.67 47.03 16 4 H -0.27 -12.07 6.87 99.48 0.68 -11.38 16 5 H -0.25 -10.82 6.53 99.48 0.65 -10.18 16 6 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 7 C -0.52 -29.32 9.14 25.60 0.23 -29.08 16 8 H 0.03 1.95 7.99 -2.91 -0.02 1.92 16 9 C 0.01 0.50 1.70 -11.54 -0.02 0.48 16 10 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 11 C -0.12 -4.75 4.68 30.59 0.14 -4.61 16 12 C -0.12 -3.34 5.92 30.59 0.18 -3.16 16 13 C -0.11 -2.46 4.96 30.59 0.15 -2.31 16 14 C -0.08 -2.07 2.15 -10.81 -0.02 -2.09 16 15 H 0.07 1.93 7.82 -2.39 -0.02 1.91 16 16 C -0.14 -2.86 4.21 30.60 0.13 -2.73 16 17 C 0.06 1.03 3.16 30.60 0.10 1.13 16 18 H 0.16 1.78 6.34 -2.39 -0.02 1.77 16 19 F -0.19 -4.10 16.64 44.97 0.75 -3.35 16 20 C 0.43 7.91 2.91 71.98 0.21 8.12 16 21 F -0.17 -2.99 16.71 44.97 0.75 -2.24 16 22 F -0.18 -3.47 17.30 44.97 0.78 -2.69 16 23 F -0.18 -3.96 16.87 44.97 0.76 -3.20 16 24 C -0.09 -3.07 4.42 30.58 0.14 -2.93 16 25 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 26 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.03 1.14 3.27 -2.39 -0.01 1.13 16 28 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.09 1.34 6.46 -2.39 -0.02 1.33 16 32 H 0.08 1.81 7.94 -2.39 -0.02 1.79 16 33 H 0.11 1.90 7.66 -2.38 -0.02 1.88 16 34 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -66.01 286.90 7.72 -58.28 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: 1.02 Total: 2.54 kcal Atomic # 6 Polarization: -37.96 SS G_CDS: 1.70 Total: -36.27 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.30 Total: -60.11 kcal Atomic # 9 Polarization: -14.52 SS G_CDS: 3.04 Total: -11.48 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.67 Total: 47.03 kcal Total: -66.01 7.72 -58.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131748.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.169 kcal (2) G-P(sol) polarization free energy of solvation -66.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -250.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds