Wall clock time and date at job start Mon Mar 30 2020 07:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99768 * 2 1 4 4 H 1.48489 * 109.46748 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46816 * 300.00013 * 3 2 1 6 6 H 1.48505 * 109.47042 * 59.99913 * 3 2 1 7 7 C 1.37877 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99472 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99984 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.47121 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47590 * 59.99591 * 9 7 2 12 12 C 1.46901 * 111.00245 * 85.00043 * 11 9 7 13 13 C 1.50696 * 109.47409 * 180.02562 * 12 11 9 14 14 C 1.38241 * 119.99575 * 269.72462 * 13 12 11 15 15 C 1.38239 * 119.99811 * 179.76411 * 14 13 12 16 16 C 1.38239 * 119.99816 * 0.50960 * 15 14 13 17 17 C 1.38236 * 119.99860 * 359.74472 * 16 15 14 18 18 C 1.38228 * 120.00492 * 89.99549 * 13 12 11 19 19 C 1.50707 * 109.47214 * 299.99064 * 9 7 2 20 20 C 1.38227 * 119.62059 * 275.02860 * 19 9 7 21 21 C 1.38627 * 119.15702 * 179.74122 * 20 19 9 22 22 C 1.38669 * 118.42389 * 0.47826 * 21 20 19 23 23 C 1.38186 * 119.16143 * 359.49762 * 22 21 20 24 24 N 1.31856 * 119.61137 * 95.00290 * 19 9 7 25 25 H 0.97000 * 120.00681 * 0.02562 * 1 2 3 26 26 H 1.00899 * 111.00041 * 321.04440 * 11 9 7 27 27 H 1.09004 * 109.46989 * 300.00483 * 12 11 9 28 28 H 1.09001 * 109.47217 * 59.99259 * 12 11 9 29 29 H 1.08002 * 119.99732 * 359.97438 * 14 13 12 30 30 H 1.07995 * 120.00004 * 180.22757 * 15 14 13 31 31 H 1.07991 * 119.99662 * 179.72194 * 16 15 14 32 32 H 1.07997 * 119.99635 * 179.97438 * 17 16 15 33 33 H 1.08009 * 119.99517 * 0.02562 * 18 13 12 34 34 H 1.07997 * 120.41915 * 359.97438 * 20 19 9 35 35 H 1.08008 * 120.78688 * 180.22921 * 21 20 19 36 36 H 1.08002 * 120.42244 * 179.78279 * 22 21 20 37 37 H 1.07996 * 119.61757 * 180.25243 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 1.9594 -3.3276 0.0005 11 7 0.4069 -2.5772 -1.1991 12 6 1.1682 -3.0894 -2.3462 13 6 0.2715 -3.1548 -3.5556 14 6 -0.4477 -4.3051 -3.8213 15 6 -1.2740 -4.3633 -4.9280 16 6 -1.3731 -3.2751 -5.7747 17 6 -0.6498 -2.1267 -5.5118 18 6 0.1724 -2.0666 -4.4022 19 6 0.3843 -2.5788 1.2308 20 6 0.9234 -3.0383 2.4178 21 6 0.1189 -3.1026 3.5449 22 6 -1.2063 -2.7099 3.4331 23 6 -1.6750 -2.2608 2.2132 24 7 -0.8794 -2.2087 1.1626 25 1 -0.4851 0.8400 -0.0004 26 1 -0.0056 -1.6809 -1.4100 27 1 2.0070 -2.4243 -2.5518 28 1 1.5434 -4.0869 -2.1172 29 1 -0.3665 -5.1569 -3.1625 30 1 -1.8387 -5.2606 -5.1336 31 1 -2.0152 -3.3222 -6.6417 32 1 -0.7269 -1.2767 -6.1735 33 1 0.7380 -1.1696 -4.1972 34 1 1.9592 -3.3400 2.4673 35 1 0.5139 -3.4540 4.4867 36 1 -1.8627 -2.7501 4.2898 37 1 -2.7047 -1.9492 2.1189 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261137438.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:12 Heat of formation + Delta-G solvation = 67.198545 kcal Electronic energy + Delta-G solvation = -19701.867179 eV Core-core repulsion = 16829.960456 eV Total energy + Delta-G solvation = -2871.906723 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.02598 -38.70402 -35.48751 -32.61024 -31.25646 -30.97967 -30.44808 -29.53909 -26.65274 -24.27053 -22.95493 -22.20415 -22.09621 -20.46658 -20.21391 -16.60723 -16.46913 -15.73657 -15.17690 -14.95981 -14.69242 -14.57627 -14.28640 -13.57908 -13.12744 -12.99572 -12.84955 -12.44265 -12.24508 -12.06376 -11.86140 -11.67332 -11.16305 -11.05022 -10.83013 -10.73682 -10.55488 -10.23887 -9.87974 -9.73781 -8.84983 -8.63959 -8.48447 -8.26300 -7.93113 -7.77916 -6.88517 -5.97391 -4.26327 1.82165 1.84289 2.27597 2.43835 3.20750 3.30543 3.33043 4.23767 4.32114 5.03644 5.19765 5.29714 5.30670 5.39617 5.53615 5.58443 5.64439 5.77190 5.92291 5.97382 6.06073 6.11641 6.21473 6.38897 6.42668 6.54333 6.65445 6.69991 6.80349 6.88831 6.89567 6.91635 7.11819 7.23439 7.31805 7.45925 7.70612 7.89715 8.03504 8.42568 8.82327 9.17789 9.44059 9.53349 10.88895 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015295 B = 0.006779 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.241934 B = 4129.122632 C = 5274.110497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.074 3.926 3 Si 0.883 3.117 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.560 4.560 8 H 0.059 0.941 9 C 0.249 3.751 10 H 0.042 0.958 11 N -0.668 5.668 12 C 0.097 3.903 13 C -0.058 4.058 14 C -0.104 4.104 15 C -0.127 4.127 16 C -0.135 4.135 17 C -0.124 4.124 18 C -0.112 4.112 19 C 0.202 3.798 20 C -0.190 4.190 21 C -0.093 4.093 22 C -0.217 4.217 23 C 0.087 3.913 24 N -0.404 5.404 25 H 0.263 0.737 26 H 0.370 0.630 27 H 0.033 0.967 28 H 0.058 0.942 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.645 -5.821 -3.580 7.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.600 4.600 8 H 0.077 0.923 9 C 0.140 3.860 10 H 0.060 0.940 11 N -0.303 5.303 12 C -0.033 4.033 13 C -0.058 4.058 14 C -0.122 4.122 15 C -0.145 4.145 16 C -0.153 4.153 17 C -0.142 4.142 18 C -0.131 4.131 19 C 0.064 3.936 20 C -0.210 4.210 21 C -0.119 4.119 22 C -0.237 4.237 23 C -0.072 4.072 24 N -0.111 5.111 25 H 0.073 0.927 26 H 0.194 0.806 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.137 0.863 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.421 -6.003 -4.214 7.723 hybrid contribution 1.282 1.711 0.955 2.342 sum -1.139 -4.291 -3.258 5.507 Atomic orbital electron populations 1.69980 1.04900 1.26340 1.45918 1.25125 0.94992 0.99015 0.94260 0.86685 0.80372 0.84209 0.77701 1.19785 1.20851 1.21021 1.21568 0.93276 0.90713 1.54398 0.92268 1.18036 0.88109 0.94960 0.84930 0.93970 1.60856 1.31904 1.36242 1.01339 1.20777 0.93699 0.99521 0.89271 1.20103 0.96972 0.93215 0.95546 1.21021 0.96386 0.98144 0.96675 1.21055 0.99427 0.98376 0.95637 1.20990 1.00458 0.94044 0.99845 1.21046 0.97587 0.97770 0.97837 1.21127 0.99050 0.98314 0.94571 1.21755 0.90122 0.86794 0.94961 1.21797 1.00304 1.04562 0.94370 1.21204 0.94062 0.98856 0.97777 1.21812 0.96559 1.06151 0.99201 1.22738 0.99368 0.95991 0.89102 1.67815 1.04551 1.09248 1.29511 0.92687 0.80623 0.94856 0.92364 0.86336 0.86794 0.86948 0.86780 0.86317 0.86509 0.86921 0.87115 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.40 9.43 55.43 0.52 -21.88 16 2 C 0.07 1.92 5.03 -17.82 -0.09 1.83 16 3 Si 0.88 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.56 -14.47 8.63 -34.44 -0.30 -14.77 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.25 6.00 2.48 -70.02 -0.17 5.83 16 10 H 0.04 0.97 7.77 -51.93 -0.40 0.56 16 11 N -0.67 -15.56 5.77 -110.46 -0.64 -16.20 16 12 C 0.10 1.94 5.61 -4.98 -0.03 1.91 16 13 C -0.06 -1.06 5.39 -104.63 -0.56 -1.62 16 14 C -0.10 -1.71 9.70 -39.58 -0.38 -2.10 16 15 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 16 C -0.14 -1.91 10.05 -39.58 -0.40 -2.31 16 17 C -0.12 -1.89 10.05 -39.58 -0.40 -2.29 16 18 C -0.11 -1.95 9.70 -39.59 -0.38 -2.34 16 19 C 0.20 4.83 5.26 -82.58 -0.43 4.39 16 20 C -0.19 -3.99 9.77 -39.44 -0.39 -4.37 16 21 C -0.09 -1.73 10.18 -39.28 -0.40 -2.13 16 22 C -0.22 -4.01 10.11 -39.44 -0.40 -4.41 16 23 C 0.09 1.81 11.18 -17.55 -0.20 1.62 16 24 N -0.40 -9.78 8.00 -9.47 -0.08 -9.86 16 25 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 26 H 0.37 9.51 6.38 -39.29 -0.25 9.26 16 27 H 0.03 0.70 7.94 -51.93 -0.41 0.28 16 28 H 0.06 1.09 8.00 -51.93 -0.42 0.67 16 29 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 30 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.12 2.08 8.06 -52.48 -0.42 1.66 16 34 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 35 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 36 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 37 H 0.13 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 315.96 15.07 4.76 4.76 Total: -1.00 -28.11 315.96 -10.21 -38.32 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -4.83 Total: 12.34 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -4.93 Total: -23.00 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -0.19 Total: -47.93 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.11 -10.21 -38.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137438.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.523 kcal (2) G-P(sol) polarization free energy of solvation -28.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds