Wall clock time and date at job start Mon Mar 30 2020 07:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99768 * 2 1 4 4 H 1.48489 * 109.46748 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46816 * 300.00013 * 3 2 1 6 6 H 1.48505 * 109.47042 * 59.99913 * 3 2 1 7 7 C 1.37877 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99472 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99984 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.47121 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47590 * 59.99591 * 9 7 2 12 12 C 1.46901 * 111.00245 * 85.00043 * 11 9 7 13 13 C 1.50696 * 109.47409 * 180.02562 * 12 11 9 14 14 C 1.38241 * 119.99575 * 269.72462 * 13 12 11 15 15 C 1.38239 * 119.99811 * 179.76411 * 14 13 12 16 16 C 1.38239 * 119.99816 * 0.50960 * 15 14 13 17 17 C 1.38236 * 119.99860 * 359.74472 * 16 15 14 18 18 C 1.38228 * 120.00492 * 89.99549 * 13 12 11 19 19 C 1.50707 * 109.47214 * 299.99064 * 9 7 2 20 20 C 1.38227 * 119.62059 * 275.02860 * 19 9 7 21 21 C 1.38627 * 119.15702 * 179.74122 * 20 19 9 22 22 C 1.38669 * 118.42389 * 0.47826 * 21 20 19 23 23 C 1.38186 * 119.16143 * 359.49762 * 22 21 20 24 24 N 1.31856 * 119.61137 * 95.00290 * 19 9 7 25 25 H 0.97000 * 120.00681 * 0.02562 * 1 2 3 26 26 H 1.00899 * 111.00041 * 321.04440 * 11 9 7 27 27 H 1.09004 * 109.46989 * 300.00483 * 12 11 9 28 28 H 1.09001 * 109.47217 * 59.99259 * 12 11 9 29 29 H 1.08002 * 119.99732 * 359.97438 * 14 13 12 30 30 H 1.07995 * 120.00004 * 180.22757 * 15 14 13 31 31 H 1.07991 * 119.99662 * 179.72194 * 16 15 14 32 32 H 1.07997 * 119.99635 * 179.97438 * 17 16 15 33 33 H 1.08009 * 119.99517 * 0.02562 * 18 13 12 34 34 H 1.07997 * 120.41915 * 359.97438 * 20 19 9 35 35 H 1.08008 * 120.78688 * 180.22921 * 21 20 19 36 36 H 1.08002 * 120.42244 * 179.78279 * 22 21 20 37 37 H 1.07996 * 119.61757 * 180.25243 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 1.9594 -3.3276 0.0005 11 7 0.4069 -2.5772 -1.1991 12 6 1.1682 -3.0894 -2.3462 13 6 0.2715 -3.1548 -3.5556 14 6 -0.4477 -4.3051 -3.8213 15 6 -1.2740 -4.3633 -4.9280 16 6 -1.3731 -3.2751 -5.7747 17 6 -0.6498 -2.1267 -5.5118 18 6 0.1724 -2.0666 -4.4022 19 6 0.3843 -2.5788 1.2308 20 6 0.9234 -3.0383 2.4178 21 6 0.1189 -3.1026 3.5449 22 6 -1.2063 -2.7099 3.4331 23 6 -1.6750 -2.2608 2.2132 24 7 -0.8794 -2.2087 1.1626 25 1 -0.4851 0.8400 -0.0004 26 1 -0.0056 -1.6809 -1.4100 27 1 2.0070 -2.4243 -2.5518 28 1 1.5434 -4.0869 -2.1172 29 1 -0.3665 -5.1569 -3.1625 30 1 -1.8387 -5.2606 -5.1336 31 1 -2.0152 -3.3222 -6.6417 32 1 -0.7269 -1.2767 -6.1735 33 1 0.7380 -1.1696 -4.1972 34 1 1.9592 -3.3400 2.4673 35 1 0.5139 -3.4540 4.4867 36 1 -1.8627 -2.7501 4.2898 37 1 -2.7047 -1.9492 2.1189 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261137438.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:12 Heat of formation + Delta-G solvation = 52.278420 kcal Electronic energy + Delta-G solvation = -19702.514164 eV Core-core repulsion = 16829.960456 eV Total energy + Delta-G solvation = -2872.553709 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.61864 -40.00009 -37.20649 -34.31916 -32.87615 -32.64304 -31.67408 -31.03019 -28.41498 -25.96387 -24.60844 -23.76208 -23.33395 -21.97035 -21.80183 -18.51322 -17.83576 -17.18700 -16.89091 -16.59588 -16.17552 -16.03157 -15.71497 -15.24362 -14.83405 -14.37257 -14.23389 -14.08794 -13.70996 -13.57697 -13.43164 -13.16089 -12.90153 -12.75962 -12.59548 -12.44130 -11.88095 -11.67499 -11.65629 -11.60942 -10.72027 -10.30627 -9.72015 -9.60374 -9.56044 -9.39797 -8.71184 -7.92559 -6.28634 0.56275 0.60531 0.67362 0.90777 1.33239 1.38079 1.46053 2.38049 2.96631 3.13068 3.48174 3.93352 4.03311 4.06706 4.18084 4.26467 4.28908 4.37150 4.49391 4.54594 4.62929 4.74038 4.80244 4.86623 4.94800 4.98790 5.18328 5.23136 5.27149 5.30684 5.57044 5.65465 5.66671 5.68690 5.71890 5.90886 6.06618 6.23276 6.31080 6.54370 6.92298 7.22159 7.44756 7.88367 8.88895 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015295 B = 0.006779 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.241934 B = 4129.122632 C = 5274.110497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.038 3.962 3 Si 0.936 3.064 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.287 1.287 7 C -0.572 4.572 8 H 0.048 0.952 9 C 0.245 3.755 10 H 0.040 0.960 11 N -0.669 5.669 12 C 0.102 3.898 13 C -0.082 4.082 14 C -0.116 4.116 15 C -0.124 4.124 16 C -0.129 4.129 17 C -0.126 4.126 18 C -0.134 4.134 19 C 0.170 3.830 20 C -0.204 4.204 21 C -0.088 4.088 22 C -0.203 4.203 23 C 0.063 3.937 24 N -0.440 5.440 25 H 0.258 0.742 26 H 0.354 0.646 27 H 0.014 0.986 28 H 0.065 0.935 29 H 0.122 0.878 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.104 0.896 34 H 0.127 0.873 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.837 -6.501 -3.395 7.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.168 4.168 3 Si 0.763 3.237 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.213 1.213 7 C -0.612 4.612 8 H 0.066 0.934 9 C 0.135 3.865 10 H 0.058 0.942 11 N -0.302 5.302 12 C -0.027 4.027 13 C -0.082 4.082 14 C -0.134 4.134 15 C -0.141 4.141 16 C -0.147 4.147 17 C -0.144 4.144 18 C -0.152 4.152 19 C 0.031 3.969 20 C -0.225 4.225 21 C -0.114 4.114 22 C -0.223 4.223 23 C -0.095 4.095 24 N -0.148 5.148 25 H 0.068 0.932 26 H 0.176 0.824 27 H 0.032 0.968 28 H 0.083 0.917 29 H 0.140 0.860 30 H 0.164 0.836 31 H 0.167 0.833 32 H 0.156 0.844 33 H 0.122 0.878 34 H 0.145 0.855 35 H 0.172 0.828 36 H 0.170 0.830 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.599 -6.700 -4.031 8.608 hybrid contribution 1.602 1.849 0.902 2.607 sum -1.997 -4.852 -3.129 6.109 Atomic orbital electron populations 1.70129 1.05652 1.26275 1.46494 1.25627 0.95655 1.01238 0.94270 0.85855 0.79286 0.81182 0.77371 1.19743 1.20611 1.21283 1.21716 0.92859 0.92050 1.54530 0.93386 1.18037 0.88446 0.93999 0.85979 0.94220 1.60858 1.32240 1.34984 1.02133 1.20745 0.93471 0.99031 0.89496 1.20008 0.98210 0.94683 0.95341 1.21166 0.96832 0.97596 0.97844 1.21441 0.98467 0.99775 0.94445 1.21440 0.99738 0.93007 1.00483 1.21350 0.96720 0.99246 0.97108 1.21162 1.00344 0.97764 0.95978 1.21715 0.90548 0.88993 0.95602 1.22013 1.01284 1.04652 0.94508 1.21672 0.93829 0.97464 0.98445 1.22214 0.97067 1.03593 0.99389 1.23168 0.99991 0.96646 0.89694 1.67666 1.05144 1.10353 1.31611 0.93249 0.82413 0.96779 0.91666 0.85951 0.83571 0.83286 0.84420 0.87797 0.85511 0.82807 0.82998 0.83289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.80 9.43 21.45 0.20 -46.60 16 2 C 0.04 2.01 5.03 84.65 0.43 2.44 16 3 Si 0.94 43.13 29.54 68.60 2.03 45.15 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 7 C -0.57 -30.68 8.63 25.60 0.22 -30.45 16 8 H 0.05 2.59 7.81 -2.91 -0.02 2.57 16 9 C 0.24 12.30 2.48 43.42 0.11 12.41 16 10 H 0.04 1.92 7.77 -2.38 -0.02 1.90 16 11 N -0.67 -32.63 5.77 -503.38 -2.91 -35.54 16 12 C 0.10 4.32 5.61 85.56 0.48 4.80 16 13 C -0.08 -3.09 5.39 -19.87 -0.11 -3.19 16 14 C -0.12 -3.78 9.70 22.27 0.22 -3.57 16 15 C -0.12 -3.30 10.05 22.27 0.22 -3.08 16 16 C -0.13 -3.26 10.05 22.27 0.22 -3.04 16 17 C -0.13 -3.67 10.05 22.27 0.22 -3.44 16 18 C -0.13 -4.79 9.70 22.27 0.22 -4.57 16 19 C 0.17 8.25 5.26 42.55 0.22 8.48 16 20 C -0.20 -8.48 9.77 22.36 0.22 -8.26 16 21 C -0.09 -3.04 10.18 22.47 0.23 -2.81 16 22 C -0.20 -6.91 10.11 22.36 0.23 -6.69 16 23 C 0.06 2.59 11.18 84.67 0.95 3.54 16 24 N -0.44 -21.58 8.00 -183.88 -1.47 -23.05 16 25 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 26 H 0.35 19.14 6.38 -89.69 -0.57 18.57 16 27 H 0.01 0.63 7.94 -2.39 -0.02 0.62 16 28 H 0.06 2.57 8.00 -2.39 -0.02 2.56 16 29 H 0.12 3.78 8.06 -2.91 -0.02 3.76 16 30 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 31 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 33 H 0.10 3.89 8.06 -2.91 -0.02 3.87 16 34 H 0.13 4.83 8.06 -2.91 -0.02 4.80 16 35 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 36 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 37 H 0.15 5.35 8.06 -2.91 -0.02 5.32 16 Total: -1.00 -62.43 315.96 2.41 -60.02 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: 0.49 Total: 37.47 kcal Atomic # 6 Polarization: -41.53 SS G_CDS: 4.07 Total: -37.46 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -4.17 Total: -105.19 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -62.43 2.41 -60.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137438.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.297 kcal (2) G-P(sol) polarization free energy of solvation -62.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds