Wall clock time and date at job start Mon Mar 30 2020 06:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99638 * 2 1 4 4 H 1.48496 * 109.47171 * 270.00509 * 3 2 1 5 5 H 1.48501 * 109.47090 * 30.00349 * 3 2 1 6 6 H 1.48505 * 109.46936 * 150.00201 * 3 2 1 7 7 C 1.37876 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00141 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99705 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46729 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47535 * 55.00035 * 10 9 7 12 12 C 1.52998 * 109.47136 * 294.99980 * 10 9 7 13 13 C 1.53007 * 109.47194 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46692 * 59.99964 * 13 12 10 15 15 C 1.52998 * 109.47331 * 299.99952 * 14 13 12 16 16 C 1.52998 * 109.47136 * 60.00478 * 15 14 13 17 17 H 1.09001 * 109.47524 * 59.99388 * 16 15 14 18 18 C 1.53002 * 109.47448 * 180.02562 * 16 15 14 19 19 H 1.08995 * 109.47164 * 174.18642 * 18 16 15 20 20 F 1.39900 * 109.46956 * 54.17855 * 18 16 15 21 21 C 1.52998 * 109.46777 * 294.18338 * 18 16 15 22 22 F 1.39901 * 109.47390 * 65.92136 * 21 18 16 23 23 F 1.39900 * 109.47077 * 185.92301 * 21 18 16 24 24 F 1.39908 * 109.47263 * 305.92287 * 21 18 16 25 25 H 0.96998 * 120.00600 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46849 * 59.99987 * 9 7 2 27 27 H 1.08996 * 109.47141 * 300.00009 * 9 7 2 28 28 H 1.09001 * 109.47015 * 60.00330 * 12 10 9 29 29 H 1.09002 * 109.47207 * 299.99922 * 12 10 9 30 30 H 1.09002 * 109.46869 * 300.00557 * 13 12 10 31 31 H 1.08995 * 109.46936 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.47429 * 60.00371 * 14 13 12 33 33 H 1.08998 * 109.46803 * 180.02562 * 14 13 12 34 34 H 1.09001 * 109.47015 * 180.02562 * 15 14 13 35 35 H 1.09002 * 109.47207 * 300.00555 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9296 -3.5551 0.8413 12 6 3.0402 -3.6534 -1.3079 13 6 4.0342 -4.8167 -1.3081 14 6 3.2728 -6.1379 -1.1827 15 6 2.4781 -6.1465 0.1246 16 6 1.4842 -4.9833 0.1249 17 1 0.8000 -5.0897 -0.7170 18 6 0.6898 -4.9914 1.4325 19 1 0.0562 -4.1058 1.4782 20 9 1.5749 -4.9882 2.5159 21 6 -0.1832 -6.2466 1.4910 22 9 0.6337 -7.3796 1.5684 23 9 -1.0083 -6.1885 2.6193 24 9 -0.9733 -6.3193 0.3387 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 3.5822 -2.7120 -1.3974 29 1 2.3561 -3.7604 -2.1497 30 1 4.7182 -4.7102 -0.4662 31 1 4.6006 -4.8103 -2.2393 32 1 2.5887 -6.2444 -2.0246 33 1 3.9809 -6.9666 -1.1825 34 1 1.9361 -7.0879 0.2141 35 1 3.1622 -6.0400 0.9665 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261138961.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:42 Heat of formation + Delta-G solvation = -238.315844 kcal Electronic energy + Delta-G solvation = -22171.946117 eV Core-core repulsion = 18281.872580 eV Total energy + Delta-G solvation = -3890.073538 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.21584 -47.95770 -47.62268 -47.29171 -38.46157 -33.47557 -32.47320 -31.14492 -28.35724 -26.64579 -23.62140 -23.39605 -21.25098 -20.36162 -19.31924 -18.62314 -18.25807 -17.77873 -16.42642 -15.70658 -15.43414 -14.80814 -14.48897 -14.36804 -14.19524 -14.11178 -13.93161 -13.71792 -13.71015 -13.56835 -13.42995 -12.62878 -12.51999 -11.96630 -11.72694 -11.40078 -11.17296 -11.07367 -10.85172 -10.79326 -10.68284 -10.37628 -10.15242 -9.81706 -9.65495 -9.06682 -8.97929 -8.38915 -6.04952 -4.06464 2.62426 3.29343 3.36407 3.39296 3.63268 3.95237 4.02838 4.42149 4.63399 4.90007 4.91789 5.15918 5.28830 5.35497 5.45181 5.68256 5.74925 5.84750 5.90736 6.01104 6.02200 6.19094 6.39319 6.48453 6.53855 6.57566 6.91921 6.97634 7.04752 7.52832 7.68921 7.92928 8.35972 8.98640 9.57716 11.06337 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.020435 B = 0.006779 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.847107 B = 4129.153267 C = 4985.530254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.022 3.978 10 C -0.073 4.073 11 H 0.066 0.934 12 C -0.101 4.101 13 C -0.123 4.123 14 C -0.112 4.112 15 C -0.133 4.133 16 C -0.111 4.111 17 H 0.095 0.905 18 C 0.059 3.941 19 H 0.141 0.859 20 F -0.178 7.178 21 C 0.429 3.571 22 F -0.174 7.174 23 F -0.180 7.180 24 F -0.172 7.172 25 H 0.261 0.739 26 H 0.020 0.980 27 H 0.015 0.985 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.180 -12.909 0.159 13.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.076 0.924 9 C -0.015 4.015 10 C -0.091 4.091 11 H 0.085 0.915 12 C -0.139 4.139 13 C -0.161 4.161 14 C -0.150 4.150 15 C -0.170 4.170 16 C -0.129 4.129 17 H 0.113 0.887 18 C 0.022 3.978 19 H 0.158 0.842 20 F -0.158 7.158 21 C 0.374 3.626 22 F -0.156 7.156 23 F -0.161 7.161 24 F -0.153 7.153 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.033 0.967 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.032 -12.822 0.195 12.983 hybrid contribution 0.199 0.759 0.155 0.800 sum 2.231 -12.063 0.351 12.273 Atomic orbital electron populations 1.69942 1.06018 1.26678 1.50816 1.25006 0.94823 0.99225 0.95335 0.86626 0.79907 0.83603 0.78080 1.20706 1.21276 1.19875 1.21172 0.93033 0.90658 1.50445 0.92445 1.19274 0.93702 0.91490 0.97051 1.21220 0.97894 0.92060 0.97929 0.91507 1.21466 0.97319 0.97762 0.97327 1.21636 0.98305 0.95163 1.00964 1.21460 0.98679 0.97590 0.97229 1.21922 0.98470 0.97692 0.98908 1.21957 0.98049 0.99243 0.93696 0.88657 1.23096 0.91458 0.95456 0.87823 0.84154 1.92878 1.69813 1.97159 1.55998 1.21390 0.80271 0.87029 0.73914 1.93118 1.71943 1.54808 1.95719 1.93205 1.74010 1.96590 1.52321 1.93198 1.75621 1.96652 1.49863 0.92974 0.96205 0.96694 0.90693 0.92611 0.92362 0.92732 0.92200 0.92522 0.91014 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.88 13.29 55.43 0.74 -25.15 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -13.69 8.41 -34.44 -0.29 -13.98 16 8 H 0.06 1.49 7.05 -52.49 -0.37 1.12 16 9 C 0.02 0.51 4.24 -27.88 -0.12 0.39 16 10 C -0.07 -1.37 1.59 -90.62 -0.14 -1.51 16 11 H 0.07 1.33 7.96 -51.93 -0.41 0.92 16 12 C -0.10 -1.75 5.01 -26.73 -0.13 -1.89 16 13 C -0.12 -1.74 5.92 -26.73 -0.16 -1.89 16 14 C -0.11 -1.45 5.92 -26.73 -0.16 -1.61 16 15 C -0.13 -1.86 4.51 -26.73 -0.12 -1.98 16 16 C -0.11 -1.76 1.48 -90.62 -0.13 -1.90 16 17 H 0.10 1.49 7.48 -51.93 -0.39 1.10 16 18 C 0.06 0.94 2.88 -26.73 -0.08 0.87 16 19 H 0.14 2.37 6.03 -51.93 -0.31 2.05 16 20 F -0.18 -3.04 15.96 2.25 0.04 -3.00 16 21 C 0.43 6.29 2.89 37.16 0.11 6.40 16 22 F -0.17 -2.48 14.14 2.25 0.03 -2.45 16 23 F -0.18 -2.71 17.32 2.25 0.04 -2.67 16 24 F -0.17 -2.50 16.46 2.25 0.04 -2.47 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.01 0.37 6.05 -51.93 -0.31 0.06 16 28 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.95 5.49 -51.93 -0.29 0.67 16 35 H 0.07 1.01 7.67 -51.93 -0.40 0.61 16 LS Contribution 288.17 15.07 4.34 4.34 Total: -1.00 -27.60 288.17 -5.64 -33.24 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -4.52 Total: -2.33 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -1.32 Total: -15.62 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 0.74 Total: -25.15 kcal Atomic # 9 Polarization: -10.73 SS G_CDS: 0.14 Total: -10.59 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.60 -5.64 -33.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138961.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.077 kcal (2) G-P(sol) polarization free energy of solvation -27.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds