Wall clock time and date at job start Mon Mar 30 2020 06:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99638 * 2 1 4 4 H 1.48496 * 109.47171 * 270.00509 * 3 2 1 5 5 H 1.48501 * 109.47090 * 30.00349 * 3 2 1 6 6 H 1.48505 * 109.46936 * 150.00201 * 3 2 1 7 7 C 1.37876 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00141 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99705 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46729 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47535 * 55.00035 * 10 9 7 12 12 C 1.52998 * 109.47136 * 294.99980 * 10 9 7 13 13 C 1.53007 * 109.47194 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46692 * 59.99964 * 13 12 10 15 15 C 1.52998 * 109.47331 * 299.99952 * 14 13 12 16 16 C 1.52998 * 109.47136 * 60.00478 * 15 14 13 17 17 H 1.09001 * 109.47524 * 59.99388 * 16 15 14 18 18 C 1.53002 * 109.47448 * 180.02562 * 16 15 14 19 19 H 1.08995 * 109.47164 * 174.18642 * 18 16 15 20 20 F 1.39900 * 109.46956 * 54.17855 * 18 16 15 21 21 C 1.52998 * 109.46777 * 294.18338 * 18 16 15 22 22 F 1.39901 * 109.47390 * 65.92136 * 21 18 16 23 23 F 1.39900 * 109.47077 * 185.92301 * 21 18 16 24 24 F 1.39908 * 109.47263 * 305.92287 * 21 18 16 25 25 H 0.96998 * 120.00600 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46849 * 59.99987 * 9 7 2 27 27 H 1.08996 * 109.47141 * 300.00009 * 9 7 2 28 28 H 1.09001 * 109.47015 * 60.00330 * 12 10 9 29 29 H 1.09002 * 109.47207 * 299.99922 * 12 10 9 30 30 H 1.09002 * 109.46869 * 300.00557 * 13 12 10 31 31 H 1.08995 * 109.46936 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.47429 * 60.00371 * 14 13 12 33 33 H 1.08998 * 109.46803 * 180.02562 * 14 13 12 34 34 H 1.09001 * 109.47015 * 180.02562 * 15 14 13 35 35 H 1.09002 * 109.47207 * 300.00555 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9296 -3.5551 0.8413 12 6 3.0402 -3.6534 -1.3079 13 6 4.0342 -4.8167 -1.3081 14 6 3.2728 -6.1379 -1.1827 15 6 2.4781 -6.1465 0.1246 16 6 1.4842 -4.9833 0.1249 17 1 0.8000 -5.0897 -0.7170 18 6 0.6898 -4.9914 1.4325 19 1 0.0562 -4.1058 1.4782 20 9 1.5749 -4.9882 2.5159 21 6 -0.1832 -6.2466 1.4910 22 9 0.6337 -7.3796 1.5684 23 9 -1.0083 -6.1885 2.6193 24 9 -0.9733 -6.3193 0.3387 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 3.5822 -2.7120 -1.3974 29 1 2.3561 -3.7604 -2.1497 30 1 4.7182 -4.7102 -0.4662 31 1 4.6006 -4.8103 -2.2393 32 1 2.5887 -6.2444 -2.0246 33 1 3.9809 -6.9666 -1.1825 34 1 1.9361 -7.0879 0.2141 35 1 3.1622 -6.0400 0.9665 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261138961.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:41 Heat of formation + Delta-G solvation = -251.248631 kcal Electronic energy + Delta-G solvation = -22172.506925 eV Core-core repulsion = 18281.872580 eV Total energy + Delta-G solvation = -3890.634345 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.42725 -49.24401 -48.82721 -48.54451 -39.81272 -35.32914 -33.80346 -32.80528 -29.65346 -28.37856 -25.17251 -24.84751 -22.60496 -21.73908 -20.66050 -19.83430 -19.52692 -19.04864 -18.42158 -17.09213 -16.80733 -16.47810 -15.87691 -15.58871 -15.49655 -15.34165 -15.16714 -15.09196 -14.92025 -14.83269 -14.74658 -14.23289 -13.97011 -13.57853 -13.42350 -12.93108 -12.62282 -12.52995 -12.46056 -12.35751 -12.01969 -11.86590 -11.62970 -11.39620 -11.23412 -10.72792 -10.58488 -10.45749 -8.16729 -6.24307 1.36893 1.40711 1.41593 1.51716 2.39256 2.42676 2.70258 2.79898 3.17378 3.35321 3.61986 3.65591 3.93905 4.10767 4.24055 4.40324 4.48227 4.58596 4.63323 4.70393 4.81259 5.06042 5.15157 5.21498 5.28933 5.30544 5.45791 5.49529 5.54331 5.62420 5.79892 5.89611 6.30523 6.90371 7.43579 8.94654 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.020435 B = 0.006779 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.847107 B = 4129.153267 C = 4985.530254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.954 3.046 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.063 4.063 11 H 0.055 0.945 12 C -0.100 4.100 13 C -0.117 4.117 14 C -0.109 4.109 15 C -0.128 4.128 16 C -0.106 4.106 17 H 0.100 0.900 18 C 0.056 3.944 19 H 0.126 0.874 20 F -0.184 7.184 21 C 0.441 3.559 22 F -0.167 7.167 23 F -0.181 7.181 24 F -0.169 7.169 25 H 0.261 0.739 26 H -0.003 1.003 27 H -0.003 1.003 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.410 -14.063 -0.289 14.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.779 3.221 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.082 4.082 11 H 0.073 0.927 12 C -0.138 4.138 13 C -0.154 4.154 14 C -0.146 4.146 15 C -0.165 4.165 16 C -0.125 4.125 17 H 0.118 0.882 18 C 0.019 3.981 19 H 0.143 0.857 20 F -0.165 7.165 21 C 0.386 3.614 22 F -0.148 7.148 23 F -0.162 7.162 24 F -0.150 7.150 25 H 0.070 0.930 26 H 0.016 0.984 27 H 0.015 0.985 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.276 -13.987 -0.254 14.368 hybrid contribution -0.208 1.123 0.307 1.183 sum 3.067 -12.864 0.053 13.225 Atomic orbital electron populations 1.70064 1.07498 1.27477 1.52151 1.25841 0.95647 1.02835 0.95229 0.85613 0.78774 0.79357 0.78331 1.19958 1.21156 1.19046 1.21597 0.93377 0.92035 1.49482 0.92295 1.19174 0.94109 0.92761 0.95048 1.21008 0.96832 0.91836 0.98503 0.92686 1.21413 0.97720 0.98504 0.96116 1.21579 0.97536 0.94245 1.02035 1.21473 0.99033 0.97540 0.96570 1.21916 0.98001 0.96923 0.99689 1.21894 0.98404 0.98502 0.93702 0.88216 1.23029 0.91437 0.95874 0.87790 0.85695 1.92862 1.70032 1.97246 1.56326 1.20980 0.79990 0.86495 0.73940 1.93132 1.71746 1.54247 1.95691 1.93206 1.74003 1.96585 1.52435 1.93209 1.75508 1.96608 1.49705 0.92992 0.98420 0.98461 0.92874 0.92823 0.92343 0.90819 0.91501 0.89953 0.89732 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.02 13.29 21.45 0.28 -54.73 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.95 43.61 29.54 68.60 2.03 45.64 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.53 -28.54 8.41 25.60 0.22 -28.32 16 8 H 0.06 3.10 7.05 -2.91 -0.02 3.08 16 9 C 0.03 1.26 4.24 29.85 0.13 1.39 16 10 C -0.06 -2.39 1.59 -10.79 -0.02 -2.41 16 11 H 0.05 2.20 7.96 -2.39 -0.02 2.18 16 12 C -0.10 -3.40 5.01 30.60 0.15 -3.25 16 13 C -0.12 -3.00 5.92 30.60 0.18 -2.82 16 14 C -0.11 -2.44 5.92 30.59 0.18 -2.26 16 15 C -0.13 -3.28 4.51 30.59 0.14 -3.14 16 16 C -0.11 -3.30 1.48 -10.79 -0.02 -3.32 16 17 H 0.10 3.02 7.48 -2.39 -0.02 3.00 16 18 C 0.06 1.78 2.88 30.59 0.09 1.87 16 19 H 0.13 4.37 6.03 -2.39 -0.01 4.35 16 20 F -0.18 -6.22 15.96 44.97 0.72 -5.51 16 21 C 0.44 12.40 2.89 71.98 0.21 12.61 16 22 F -0.17 -4.38 14.14 44.97 0.64 -3.74 16 23 F -0.18 -5.27 17.32 44.97 0.78 -4.49 16 24 F -0.17 -4.69 16.46 44.97 0.74 -3.95 16 25 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 26 H 0.00 -0.14 8.14 -2.38 -0.02 -0.15 16 27 H 0.00 -0.14 6.05 -2.39 -0.01 -0.16 16 28 H 0.05 2.01 6.95 -2.39 -0.02 1.99 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.98 5.49 -2.39 -0.01 1.97 16 35 H 0.07 1.76 7.67 -2.39 -0.02 1.75 16 Total: -1.00 -58.82 288.17 8.00 -50.81 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: 1.10 Total: 5.04 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 1.72 Total: -29.06 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.28 Total: -54.73 kcal Atomic # 9 Polarization: -20.57 SS G_CDS: 2.87 Total: -17.70 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -58.82 8.00 -50.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138961.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.434 kcal (2) G-P(sol) polarization free energy of solvation -58.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -259.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds