Wall clock time and date at job start Mon Mar 30 2020 06:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00164 * 2 1 4 4 H 1.48505 * 109.46860 * 270.00009 * 3 2 1 5 5 H 1.48500 * 109.47027 * 29.99837 * 3 2 1 6 6 H 1.48495 * 109.47265 * 149.99813 * 3 2 1 7 7 C 1.37882 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99936 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99724 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.46982 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47101 * 54.72761 * 10 9 7 12 12 C 1.53003 * 109.46800 * 294.73072 * 10 9 7 13 13 C 1.53007 * 109.46897 * 299.99624 * 12 10 9 14 14 C 1.52998 * 109.47378 * 300.00323 * 13 12 10 15 15 C 1.53005 * 109.47002 * 60.00009 * 14 13 12 16 16 C 1.52998 * 109.47198 * 174.72918 * 10 9 7 17 17 H 1.08999 * 109.46964 * 179.97438 * 16 10 9 18 18 C 1.52995 * 109.46954 * 299.99924 * 16 10 9 19 19 H 1.08995 * 109.47804 * 66.26892 * 18 16 10 20 20 F 1.39901 * 109.46948 * 306.26190 * 18 16 10 21 21 C 1.53010 * 109.47042 * 186.27099 * 18 16 10 22 22 F 1.39898 * 109.47193 * 55.71954 * 21 18 16 23 23 F 1.39895 * 109.46894 * 175.72287 * 21 18 16 24 24 F 1.39905 * 109.46265 * 295.71852 * 21 18 16 25 25 H 0.97007 * 120.00169 * 359.97438 * 1 2 3 26 26 H 1.08991 * 109.47653 * 59.99695 * 9 7 2 27 27 H 1.09001 * 109.47097 * 299.99138 * 9 7 2 28 28 H 1.08998 * 109.47506 * 59.99549 * 12 10 9 29 29 H 1.08999 * 109.47291 * 180.02562 * 12 10 9 30 30 H 1.08996 * 109.47156 * 179.97438 * 13 12 10 31 31 H 1.08999 * 109.46832 * 60.00109 * 13 12 10 32 32 H 1.08998 * 109.47232 * 300.00180 * 14 13 12 33 33 H 1.08999 * 109.47223 * 180.02562 * 14 13 12 34 34 H 1.08998 * 109.46987 * 60.00021 * 15 14 13 35 35 H 1.08998 * 109.47138 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 1 3.5834 -3.1768 -0.8383 12 6 3.6220 -3.3188 1.3109 13 6 4.2369 -2.5606 2.4890 14 6 5.7612 -2.5626 2.3571 15 6 6.1606 -1.8803 1.0472 16 6 5.5458 -2.6386 -0.1309 17 1 5.9091 -3.6663 -0.1306 18 6 5.9451 -1.9564 -1.4408 19 1 5.6807 -0.9000 -1.3957 20 9 5.2698 -2.5612 -2.5064 21 6 7.4546 -2.0958 -1.6489 22 9 7.8078 -3.4489 -1.6094 23 9 7.8056 -1.5583 -2.8918 24 9 8.1304 -1.4076 -0.6355 25 1 -0.4851 0.8401 0.0004 26 1 3.8745 -0.6800 0.8910 27 1 3.8751 -0.6806 -0.8889 28 1 2.5361 -3.3174 1.4050 29 1 3.9857 -4.3464 1.3111 30 1 3.9520 -3.0463 3.4223 31 1 3.8736 -1.5329 2.4891 32 1 6.1245 -3.5902 2.3570 33 1 6.1993 -2.0228 3.1966 34 1 5.7973 -0.8527 1.0473 35 1 7.2465 -1.8822 0.9529 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261138962.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:45 Heat of formation + Delta-G solvation = -230.024957 kcal Electronic energy + Delta-G solvation = -22423.865305 eV Core-core repulsion = 18534.151287 eV Total energy + Delta-G solvation = -3889.714018 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.34296 -48.10432 -47.70024 -47.44371 -38.88729 -33.06633 -32.56527 -31.14729 -28.44643 -27.35412 -23.58978 -22.95532 -21.71463 -21.12484 -18.88763 -18.64400 -17.93997 -17.66154 -16.85134 -15.90679 -15.66207 -14.90865 -14.50372 -14.40580 -14.23509 -14.13118 -14.05325 -13.88055 -13.82324 -13.64907 -13.55914 -12.86380 -12.44142 -12.14668 -12.01971 -11.55031 -11.34691 -11.12655 -11.07864 -10.78774 -10.50545 -10.28126 -9.86932 -9.73856 -9.50846 -9.36731 -9.00471 -8.55038 -6.06476 -4.03524 2.47647 3.26248 3.34390 3.34950 3.49988 3.80971 3.87720 4.41168 4.45526 4.75131 4.83146 5.14031 5.25992 5.32173 5.43019 5.61821 5.74721 5.81980 5.84868 5.93942 6.03076 6.16398 6.40340 6.41140 6.55470 6.64131 6.68999 6.92494 7.03654 7.15957 7.38100 7.76187 8.51643 8.99030 9.55862 11.06933 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.020108 B = 0.007706 C = 0.006730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.122807 B = 3632.653839 C = 4159.170850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.872 3.128 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.512 4.512 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.066 4.066 11 H 0.073 0.927 12 C -0.100 4.100 13 C -0.123 4.123 14 C -0.110 4.110 15 C -0.134 4.134 16 C -0.111 4.111 17 H 0.085 0.915 18 C 0.061 3.939 19 H 0.131 0.869 20 F -0.174 7.174 21 C 0.429 3.571 22 F -0.176 7.176 23 F -0.179 7.179 24 F -0.169 7.169 25 H 0.262 0.738 26 H 0.027 0.973 27 H 0.005 0.995 28 H 0.079 0.921 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.080 -4.276 0.879 15.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.699 3.301 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.550 4.550 8 H 0.092 0.908 9 C -0.051 4.051 10 C -0.085 4.085 11 H 0.091 0.909 12 C -0.137 4.137 13 C -0.160 4.160 14 C -0.148 4.148 15 C -0.171 4.171 16 C -0.130 4.130 17 H 0.104 0.896 18 C 0.024 3.976 19 H 0.149 0.851 20 F -0.154 7.154 21 C 0.374 3.626 22 F -0.157 7.157 23 F -0.160 7.160 24 F -0.150 7.150 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.023 0.977 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 14.939 -4.178 0.845 15.536 hybrid contribution 0.581 0.934 -0.283 1.136 sum 15.521 -3.244 0.562 15.866 Atomic orbital electron populations 1.69903 1.06245 1.26781 1.51219 1.25005 0.94661 0.98935 0.94774 0.86905 0.80477 0.84158 0.78532 1.20319 1.21379 1.18997 1.21063 0.89147 0.94367 1.50379 0.90787 1.19808 0.97699 0.91482 0.96101 1.21013 0.89112 1.00016 0.98352 0.90899 1.21389 1.01898 0.96734 0.93683 1.21583 0.94161 1.02373 0.97873 1.21442 0.97041 0.99978 0.96312 1.21953 1.00611 1.00483 0.94102 1.21935 1.00668 0.99857 0.90540 0.89631 1.22986 0.83918 1.02756 0.87976 0.85114 1.92922 1.80059 1.85331 1.57102 1.21358 0.92889 0.74224 0.74135 1.93191 1.93531 1.32952 1.96053 1.93208 1.93617 1.86017 1.43174 1.93122 1.82579 1.79733 1.59590 0.92779 0.95487 0.97666 0.90271 0.93820 0.92879 0.90545 0.92539 0.92299 0.90593 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.87 20.92 27.47 -169.99 -4.67 16.25 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 7 C -0.51 -13.70 8.96 -34.44 -0.31 -14.01 16 8 H 0.07 2.15 7.32 -52.49 -0.38 1.76 16 9 C -0.01 -0.30 2.59 -27.88 -0.07 -0.38 16 10 C -0.07 -1.21 1.95 -90.62 -0.18 -1.39 16 11 H 0.07 1.43 7.66 -51.93 -0.40 1.03 16 12 C -0.10 -1.70 5.26 -26.73 -0.14 -1.84 16 13 C -0.12 -1.91 5.65 -26.73 -0.15 -2.06 16 14 C -0.11 -1.46 5.92 -26.73 -0.16 -1.62 16 15 C -0.13 -1.86 4.43 -26.73 -0.12 -1.98 16 16 C -0.11 -1.67 1.71 -90.62 -0.16 -1.83 16 17 H 0.09 1.20 7.51 -51.93 -0.39 0.81 16 18 C 0.06 0.91 2.46 -26.73 -0.07 0.85 16 19 H 0.13 1.92 6.66 -51.93 -0.35 1.58 16 20 F -0.17 -2.93 16.25 2.25 0.04 -2.89 16 21 C 0.43 5.82 2.89 37.16 0.11 5.93 16 22 F -0.18 -2.41 16.52 2.25 0.04 -2.37 16 23 F -0.18 -2.51 17.25 2.25 0.04 -2.47 16 24 F -0.17 -2.16 14.14 2.25 0.03 -2.13 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.03 0.58 3.89 -51.93 -0.20 0.38 16 27 H 0.01 0.11 5.73 -51.93 -0.30 -0.18 16 28 H 0.08 1.54 6.97 -51.93 -0.36 1.18 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.36 6.32 -51.93 -0.33 1.03 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.14 6.55 -51.93 -0.34 0.80 16 35 H 0.07 0.92 5.41 -51.93 -0.28 0.64 16 LS Contribution 278.54 15.07 4.20 4.20 Total: -1.00 -28.36 278.54 -5.08 -33.43 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -4.19 Total: -1.10 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -1.34 Total: -16.54 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: 0.77 Total: -26.38 kcal Atomic # 9 Polarization: -10.01 SS G_CDS: 0.14 Total: -9.86 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.36 -5.08 -33.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138962.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.591 kcal (2) G-P(sol) polarization free energy of solvation -28.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds