Wall clock time and date at job start Mon Mar 30 2020 06:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00164 * 2 1 4 4 H 1.48505 * 109.46860 * 270.00009 * 3 2 1 5 5 H 1.48500 * 109.47027 * 29.99837 * 3 2 1 6 6 H 1.48495 * 109.47265 * 149.99813 * 3 2 1 7 7 C 1.37882 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99936 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99724 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.46982 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47101 * 54.72761 * 10 9 7 12 12 C 1.53003 * 109.46800 * 294.73072 * 10 9 7 13 13 C 1.53007 * 109.46897 * 299.99624 * 12 10 9 14 14 C 1.52998 * 109.47378 * 300.00323 * 13 12 10 15 15 C 1.53005 * 109.47002 * 60.00009 * 14 13 12 16 16 C 1.52998 * 109.47198 * 174.72918 * 10 9 7 17 17 H 1.08999 * 109.46964 * 179.97438 * 16 10 9 18 18 C 1.52995 * 109.46954 * 299.99924 * 16 10 9 19 19 H 1.08995 * 109.47804 * 66.26892 * 18 16 10 20 20 F 1.39901 * 109.46948 * 306.26190 * 18 16 10 21 21 C 1.53010 * 109.47042 * 186.27099 * 18 16 10 22 22 F 1.39898 * 109.47193 * 55.71954 * 21 18 16 23 23 F 1.39895 * 109.46894 * 175.72287 * 21 18 16 24 24 F 1.39905 * 109.46265 * 295.71852 * 21 18 16 25 25 H 0.97007 * 120.00169 * 359.97438 * 1 2 3 26 26 H 1.08991 * 109.47653 * 59.99695 * 9 7 2 27 27 H 1.09001 * 109.47097 * 299.99138 * 9 7 2 28 28 H 1.08998 * 109.47506 * 59.99549 * 12 10 9 29 29 H 1.08999 * 109.47291 * 180.02562 * 12 10 9 30 30 H 1.08996 * 109.47156 * 179.97438 * 13 12 10 31 31 H 1.08999 * 109.46832 * 60.00109 * 13 12 10 32 32 H 1.08998 * 109.47232 * 300.00180 * 14 13 12 33 33 H 1.08999 * 109.47223 * 180.02562 * 14 13 12 34 34 H 1.08998 * 109.46987 * 60.00021 * 15 14 13 35 35 H 1.08998 * 109.47138 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 1 3.5834 -3.1768 -0.8383 12 6 3.6220 -3.3188 1.3109 13 6 4.2369 -2.5606 2.4890 14 6 5.7612 -2.5626 2.3571 15 6 6.1606 -1.8803 1.0472 16 6 5.5458 -2.6386 -0.1309 17 1 5.9091 -3.6663 -0.1306 18 6 5.9451 -1.9564 -1.4408 19 1 5.6807 -0.9000 -1.3957 20 9 5.2698 -2.5612 -2.5064 21 6 7.4546 -2.0958 -1.6489 22 9 7.8078 -3.4489 -1.6094 23 9 7.8056 -1.5583 -2.8918 24 9 8.1304 -1.4076 -0.6355 25 1 -0.4851 0.8401 0.0004 26 1 3.8745 -0.6800 0.8910 27 1 3.8751 -0.6806 -0.8889 28 1 2.5361 -3.3174 1.4050 29 1 3.9857 -4.3464 1.3111 30 1 3.9520 -3.0463 3.4223 31 1 3.8736 -1.5329 2.4891 32 1 6.1245 -3.5902 2.3570 33 1 6.1993 -2.0228 3.1966 34 1 5.7973 -0.8527 1.0473 35 1 7.2465 -1.8822 0.9529 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261138962.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:45 Heat of formation + Delta-G solvation = -244.907809 kcal Electronic energy + Delta-G solvation = -22424.510674 eV Core-core repulsion = 18534.151287 eV Total energy + Delta-G solvation = -3890.359387 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.41521 -49.26018 -48.77811 -48.58095 -40.21429 -35.01952 -33.77144 -32.77668 -29.78709 -28.91967 -24.80436 -24.66244 -23.03912 -22.33742 -20.06258 -19.74480 -19.10757 -19.04152 -18.80140 -17.13827 -16.96179 -16.29173 -15.95970 -15.58418 -15.51588 -15.37623 -15.18881 -15.15146 -14.96029 -14.90233 -14.83167 -14.47902 -13.98833 -13.57911 -13.49186 -12.93450 -12.83421 -12.58855 -12.40406 -12.15596 -11.92559 -11.81708 -11.54858 -11.45423 -10.94963 -10.84392 -10.64683 -10.63717 -8.23649 -6.24899 1.35760 1.36308 1.37464 1.47708 2.38231 2.40329 2.68996 2.78707 3.12179 3.29104 3.59692 3.66262 3.94225 4.10484 4.22799 4.39724 4.47807 4.56247 4.59738 4.65886 4.80449 4.99149 5.09500 5.17679 5.23100 5.28654 5.31818 5.50960 5.56693 5.61488 5.73040 5.80202 6.36489 6.82453 7.37701 8.93265 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.020108 B = 0.007706 C = 0.006730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.122807 B = 3632.653839 C = 4159.170850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.002 3.998 3 Si 0.936 3.064 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.236 1.236 7 C -0.511 4.511 8 H 0.032 0.968 9 C -0.009 4.009 10 C -0.065 4.065 11 H 0.050 0.950 12 C -0.099 4.099 13 C -0.121 4.121 14 C -0.105 4.105 15 C -0.134 4.134 16 C -0.104 4.104 17 H 0.102 0.898 18 C 0.053 3.947 19 H 0.134 0.866 20 F -0.188 7.188 21 C 0.441 3.559 22 F -0.174 7.174 23 F -0.181 7.181 24 F -0.160 7.160 25 H 0.263 0.737 26 H 0.038 0.962 27 H 0.010 0.990 28 H 0.041 0.959 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.276 -3.920 1.595 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.194 4.194 3 Si 0.760 3.240 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.159 1.159 7 C -0.549 4.549 8 H 0.050 0.950 9 C -0.046 4.046 10 C -0.083 4.083 11 H 0.069 0.931 12 C -0.137 4.137 13 C -0.159 4.159 14 C -0.142 4.142 15 C -0.171 4.171 16 C -0.122 4.122 17 H 0.120 0.880 18 C 0.016 3.984 19 H 0.152 0.848 20 F -0.169 7.169 21 C 0.386 3.614 22 F -0.156 7.156 23 F -0.162 7.162 24 F -0.141 7.141 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.028 0.972 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 18.163 -3.838 1.563 18.630 hybrid contribution -0.491 0.719 -0.516 1.012 sum 17.672 -3.119 1.047 17.975 Atomic orbital electron populations 1.70075 1.08327 1.27757 1.53504 1.25952 0.95464 1.03212 0.94740 0.85860 0.80157 0.78912 0.79062 1.19629 1.21522 1.15912 1.21404 0.91983 0.92694 1.48840 0.94964 1.19740 0.94062 0.94238 0.96512 1.20872 0.91798 0.97441 0.98200 0.93129 1.21350 0.99785 0.98473 0.94053 1.21554 0.96233 1.00474 0.97596 1.21435 0.94692 1.01452 0.96638 1.21999 1.01769 0.99659 0.93652 1.21851 0.97726 1.01301 0.91343 0.87959 1.23108 0.85007 1.02845 0.87486 0.84814 1.92895 1.80592 1.85559 1.57809 1.20947 0.91858 0.74318 0.74229 1.93200 1.93427 1.32884 1.96050 1.93210 1.93521 1.86063 1.43393 1.93139 1.82260 1.79552 1.59162 0.92868 0.94430 0.97194 0.94064 0.91352 0.91477 0.93181 0.90653 0.90292 0.91580 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.68 13.96 21.45 0.30 -59.39 16 2 C 0.00 0.13 5.47 84.66 0.46 0.59 16 3 Si 0.94 42.93 27.47 68.60 1.88 44.81 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 6 H -0.24 -9.62 6.54 99.48 0.65 -8.97 16 7 C -0.51 -28.30 8.96 25.60 0.23 -28.07 16 8 H 0.03 1.99 7.32 -2.91 -0.02 1.97 16 9 C -0.01 -0.37 2.59 29.85 0.08 -0.29 16 10 C -0.06 -2.32 1.95 -10.79 -0.02 -2.34 16 11 H 0.05 2.02 7.66 -2.39 -0.02 2.00 16 12 C -0.10 -3.34 5.26 30.60 0.16 -3.18 16 13 C -0.12 -3.54 5.65 30.60 0.17 -3.37 16 14 C -0.10 -2.36 5.92 30.60 0.18 -2.18 16 15 C -0.13 -3.20 4.43 30.60 0.14 -3.07 16 16 C -0.10 -2.84 1.71 -10.80 -0.02 -2.86 16 17 H 0.10 2.52 7.51 -2.39 -0.02 2.50 16 18 C 0.05 1.46 2.46 30.60 0.08 1.54 16 19 H 0.13 3.61 6.66 -2.39 -0.02 3.59 16 20 F -0.19 -6.13 16.25 44.97 0.73 -5.40 16 21 C 0.44 10.63 2.89 71.99 0.21 10.84 16 22 F -0.17 -4.22 16.52 44.97 0.74 -3.48 16 23 F -0.18 -4.60 17.25 44.97 0.78 -3.82 16 24 F -0.16 -3.47 14.14 44.97 0.64 -2.83 16 25 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 26 H 0.04 1.56 3.89 -2.39 -0.01 1.55 16 27 H 0.01 0.42 5.73 -2.39 -0.01 0.41 16 28 H 0.04 1.67 6.97 -2.39 -0.02 1.66 16 29 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.05 1.72 6.32 -2.39 -0.02 1.70 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.74 6.55 -2.39 -0.02 1.72 16 35 H 0.10 1.92 5.41 -2.39 -0.01 1.91 16 Total: -1.00 -62.91 278.54 7.79 -55.12 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 1.06 Total: 7.37 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 1.66 Total: -32.39 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: 0.30 Total: -59.39 kcal Atomic # 9 Polarization: -18.42 SS G_CDS: 2.89 Total: -15.53 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.88 Total: 44.81 kcal Total: -62.91 7.79 -55.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138962.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.788 kcal (2) G-P(sol) polarization free energy of solvation -62.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds