Wall clock time and date at job start Mon Mar 30 2020 06:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99883 * 2 1 4 4 H 1.48491 * 109.47231 * 270.00257 * 3 2 1 5 5 H 1.48496 * 109.46968 * 30.00458 * 3 2 1 6 6 H 1.48502 * 109.47070 * 150.00232 * 3 2 1 7 7 C 1.37882 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99626 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00089 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47161 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.46872 * 57.48517 * 10 9 7 12 12 C 1.52995 * 109.46929 * 297.48619 * 10 9 7 13 13 C 1.52999 * 109.47391 * 299.99717 * 12 10 9 14 14 C 1.52994 * 109.47188 * 300.00591 * 13 12 10 15 15 C 1.52995 * 109.47437 * 59.99437 * 14 13 12 16 16 C 1.52996 * 109.47302 * 177.48461 * 10 9 7 17 17 H 1.09000 * 109.47273 * 180.02562 * 16 10 9 18 18 C 1.52999 * 109.47130 * 300.00296 * 16 10 9 19 19 H 1.09005 * 109.46964 * 306.76338 * 18 16 10 20 20 F 1.39898 * 109.47250 * 66.76025 * 18 16 10 21 21 C 1.53001 * 109.47162 * 186.76453 * 18 16 10 22 22 F 1.39895 * 109.47274 * 54.15298 * 21 18 16 23 23 F 1.39904 * 109.46749 * 294.15251 * 21 18 16 24 24 F 1.39896 * 109.47161 * 174.15787 * 21 18 16 25 25 H 0.96993 * 120.00050 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.46935 * 60.00258 * 9 7 2 27 27 H 1.09002 * 109.46616 * 299.99982 * 9 7 2 28 28 H 1.09000 * 109.46866 * 179.97438 * 12 10 9 29 29 H 1.09004 * 109.47281 * 60.00109 * 12 10 9 30 30 H 1.08999 * 109.47569 * 179.97438 * 13 12 10 31 31 H 1.09000 * 109.46944 * 60.00258 * 13 12 10 32 32 H 1.09000 * 109.46906 * 299.99690 * 14 13 12 33 33 H 1.09004 * 109.47299 * 179.97438 * 14 13 12 34 34 H 1.09004 * 109.47281 * 180.02562 * 15 14 13 35 35 H 1.08999 * 109.47329 * 60.00484 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9013 -3.5793 0.8661 12 6 3.0827 -3.6171 -1.2802 13 6 2.1621 -3.7333 -2.4966 14 6 1.3981 -5.0574 -2.4333 15 6 0.5607 -5.1024 -1.1537 16 6 1.4815 -4.9862 0.0628 17 1 2.1898 -5.8147 0.0632 18 6 0.6440 -5.0312 1.3424 19 1 1.2829 -4.8285 2.2021 20 9 -0.3653 -4.0649 1.2734 21 6 0.0137 -6.4174 1.4910 22 9 1.0136 -7.3937 1.4262 23 9 -0.9073 -6.6239 0.4584 24 9 -0.6415 -6.5020 2.7241 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 3.7914 -4.4453 -1.2800 29 1 3.6270 -2.6737 -1.3253 30 1 2.7586 -3.7008 -3.4083 31 1 1.4537 -2.9049 -2.4966 32 1 2.1064 -5.8858 -2.4333 33 1 0.7418 -5.1400 -3.2997 34 1 0.0168 -6.0460 -1.1084 35 1 -0.1477 -4.2740 -1.1536 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261138964.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:51 Heat of formation + Delta-G solvation = -241.150345 kcal Electronic energy + Delta-G solvation = -22479.009234 eV Core-core repulsion = 18588.812783 eV Total energy + Delta-G solvation = -3890.196451 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.37508 -49.21748 -48.78093 -48.50770 -39.95322 -35.00477 -33.64077 -32.49211 -29.76262 -28.41604 -25.05159 -24.68576 -22.90866 -22.36908 -19.89929 -19.76139 -19.06851 -18.99573 -18.25995 -17.03443 -16.88495 -16.44137 -16.01830 -15.64583 -15.49932 -15.37195 -15.13467 -14.88731 -14.86110 -14.73303 -14.59181 -14.23789 -13.75690 -13.45455 -13.23856 -12.91822 -12.82013 -12.51890 -12.34242 -12.29681 -11.97947 -11.82289 -11.50435 -11.20348 -10.82534 -10.68490 -10.47763 -10.29012 -8.07761 -6.14202 1.40565 1.41107 1.43236 1.50967 2.45137 2.47213 2.76907 2.87572 3.25756 3.43245 3.65706 3.74980 4.02504 4.15241 4.31225 4.51831 4.55693 4.63115 4.67672 4.76077 4.82537 5.06322 5.19180 5.34568 5.37259 5.38779 5.43259 5.59902 5.66167 5.80790 6.01609 6.09268 6.41514 7.05679 7.51693 9.03111 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.024095 B = 0.006826 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.782082 B = 4100.826546 C = 4709.069557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.948 3.052 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.015 3.985 10 C -0.074 4.074 11 H 0.064 0.936 12 C -0.096 4.096 13 C -0.120 4.120 14 C -0.104 4.104 15 C -0.133 4.133 16 C -0.103 4.103 17 H 0.121 0.879 18 C 0.055 3.945 19 H 0.144 0.856 20 F -0.184 7.184 21 C 0.440 3.560 22 F -0.164 7.164 23 F -0.175 7.175 24 F -0.182 7.182 25 H 0.257 0.743 26 H 0.001 0.999 27 H 0.018 0.982 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.035 0.965 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.890 -14.712 0.189 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.775 3.225 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.188 1.188 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.022 4.022 10 C -0.092 4.092 11 H 0.083 0.917 12 C -0.133 4.133 13 C -0.158 4.158 14 C -0.141 4.141 15 C -0.170 4.170 16 C -0.122 4.122 17 H 0.139 0.861 18 C 0.018 3.982 19 H 0.161 0.839 20 F -0.165 7.165 21 C 0.385 3.615 22 F -0.145 7.145 23 F -0.156 7.156 24 F -0.163 7.163 25 H 0.065 0.935 26 H 0.019 0.981 27 H 0.036 0.964 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.709 -14.609 0.195 15.074 hybrid contribution -0.320 1.279 0.137 1.325 sum 3.388 -13.330 0.332 13.758 Atomic orbital electron populations 1.70118 1.07527 1.26908 1.52787 1.25818 0.95513 1.02613 0.95854 0.85700 0.78884 0.79885 0.78081 1.20382 1.21497 1.18825 1.21725 0.93186 0.92505 1.48518 0.92498 1.19487 0.94263 0.91642 0.96805 1.21103 0.96883 0.92713 0.98509 0.91738 1.21354 0.97171 1.01177 0.93638 1.21510 0.98607 0.97603 0.98055 1.21419 0.98654 0.97551 0.96476 1.21886 0.98062 1.02370 0.94663 1.21890 0.97522 1.01305 0.91472 0.86083 1.23087 0.88142 0.81107 1.05879 0.83857 1.92905 1.62518 1.63144 1.97885 1.21069 0.77221 0.89432 0.73787 1.93198 1.60281 1.65053 1.96000 1.93135 1.68158 1.95836 1.58508 1.93204 1.82272 1.96846 1.44008 0.93451 0.98100 0.96434 0.90629 0.93194 0.91465 0.94568 0.89927 0.91706 0.89927 0.93634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 3 Si 0.95 44.49 29.54 68.60 2.03 46.52 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.52 -28.44 8.39 25.60 0.21 -28.23 16 8 H 0.06 2.98 6.88 -2.91 -0.02 2.96 16 9 C 0.01 0.73 3.13 29.85 0.09 0.82 16 10 C -0.07 -2.68 2.17 -10.80 -0.02 -2.70 16 11 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 12 C -0.10 -3.18 5.23 30.59 0.16 -3.02 16 13 C -0.12 -3.94 5.65 30.59 0.17 -3.77 16 14 C -0.10 -2.84 5.92 30.59 0.18 -2.65 16 15 C -0.13 -4.09 4.25 30.59 0.13 -3.96 16 16 C -0.10 -3.04 1.84 -10.79 -0.02 -3.05 16 17 H 0.12 2.75 7.45 -2.39 -0.02 2.73 16 18 C 0.06 1.64 2.92 30.59 0.09 1.73 16 19 H 0.14 3.60 8.14 -2.38 -0.02 3.58 16 20 F -0.18 -7.32 12.96 44.97 0.58 -6.74 16 21 C 0.44 11.56 2.90 71.98 0.21 11.76 16 22 F -0.16 -3.73 16.45 44.97 0.74 -2.99 16 23 F -0.17 -4.96 14.17 44.97 0.64 -4.32 16 24 F -0.18 -4.97 17.32 44.97 0.78 -4.19 16 25 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 26 H 0.00 0.04 4.81 -2.39 -0.01 0.03 16 27 H 0.02 0.94 5.30 -2.39 -0.01 0.93 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.05 1.87 6.78 -2.38 -0.02 1.85 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.04 1.50 6.37 -2.39 -0.02 1.48 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 34 H 0.08 2.28 5.50 -2.38 -0.01 2.27 16 35 H 0.04 1.77 5.99 -2.39 -0.01 1.76 16 Total: -1.00 -63.53 279.17 7.83 -55.70 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: 1.11 Total: 5.46 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 1.67 Total: -32.68 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.28 Total: -56.76 kcal Atomic # 9 Polarization: -20.97 SS G_CDS: 2.74 Total: -18.24 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -63.53 7.83 -55.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138964.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.451 kcal (2) G-P(sol) polarization free energy of solvation -63.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds