Wall clock time and date at job start Mon Mar 30 2020 07:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00089 * 2 1 4 4 H 1.48497 * 109.46981 * 179.72848 * 3 2 1 5 5 H 1.48507 * 109.47088 * 299.72540 * 3 2 1 6 6 H 1.48494 * 109.47429 * 59.72310 * 3 2 1 7 7 C 1.37876 * 119.99806 * 179.72940 * 2 1 3 8 8 H 1.07999 * 120.00428 * 173.51168 * 7 2 1 9 9 C 1.50701 * 120.00064 * 353.50007 * 7 2 1 10 10 H 1.09007 * 109.47091 * 332.35954 * 9 7 2 11 11 N 1.46892 * 109.47364 * 212.35665 * 9 7 2 12 12 C 1.46903 * 111.00377 * 85.00237 * 11 9 7 13 13 C 1.50695 * 109.47075 * 180.02562 * 12 11 9 14 14 C 1.38241 * 119.99974 * 269.72079 * 13 12 11 15 15 C 1.38232 * 119.99654 * 179.76751 * 14 13 12 16 16 C 1.38239 * 120.00434 * 0.51197 * 15 14 13 17 17 C 1.38234 * 119.99618 * 359.74496 * 16 15 14 18 18 C 1.38231 * 120.00203 * 359.97438 * 17 16 15 19 19 C 1.50703 * 109.46802 * 92.35422 * 9 7 2 20 20 C 1.38647 * 120.78912 * 73.96496 * 19 9 7 21 21 C 1.38204 * 119.16181 * 179.75655 * 20 19 9 22 22 N 1.31868 * 120.76446 * 0.52778 * 21 20 19 23 23 C 1.31869 * 121.72390 * 359.74402 * 22 21 20 24 24 C 1.38206 * 120.76860 * 359.97438 * 23 22 21 25 25 H 0.96994 * 120.00208 * 183.79308 * 1 2 3 26 26 H 1.00900 * 111.00063 * 321.04293 * 11 9 7 27 27 H 1.08998 * 109.46941 * 300.00211 * 12 11 9 28 28 H 1.08999 * 109.46802 * 60.00075 * 12 11 9 29 29 H 1.07995 * 119.99931 * 0.02562 * 14 13 12 30 30 H 1.08005 * 119.99699 * 180.23239 * 15 14 13 31 31 H 1.07996 * 120.00022 * 179.72557 * 16 15 14 32 32 H 1.07998 * 119.99632 * 179.97438 * 17 16 15 33 33 H 1.08003 * 119.99918 * 179.97438 * 18 17 16 34 34 H 1.08006 * 120.41875 * 359.97438 * 20 19 9 35 35 H 1.08003 * 119.61692 * 180.25079 * 21 20 19 36 36 H 1.08003 * 119.61673 * 179.97438 * 23 22 21 37 37 H 1.07998 * 120.41969 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0066 5 1 1.8955 2.3936 -1.2159 6 1 1.8854 2.3994 1.2090 7 6 2.0045 -1.1940 0.0056 8 1 3.0793 -1.1977 -0.1000 9 6 1.2582 -2.4942 0.1595 10 1 0.3391 -2.3216 0.7196 11 7 2.0982 -3.4584 0.8823 12 6 1.9682 -3.2848 2.3352 13 6 2.8429 -4.2884 3.0413 14 6 2.3355 -5.5282 3.3826 15 6 3.1393 -6.4506 4.0260 16 6 4.4472 -6.1295 4.3377 17 6 4.9529 -4.8878 4.0011 18 6 4.1510 -3.9675 3.3525 19 6 0.9207 -3.0439 -1.2025 20 6 1.9004 -3.6152 -2.0000 21 6 1.5525 -4.1134 -3.2413 22 7 0.3087 -4.0403 -3.6730 23 6 -0.6476 -3.4990 -2.9441 24 6 -0.3759 -2.9851 -1.6902 25 1 -0.4850 -0.8381 0.0556 26 1 3.0625 -3.3852 0.5942 27 1 2.2782 -2.2765 2.6097 28 1 0.9295 -3.4379 2.6279 29 1 1.3124 -5.7777 3.1429 30 1 2.7440 -7.4206 4.2894 31 1 5.0738 -6.8485 4.8443 32 1 5.9746 -4.6367 4.2449 33 1 4.5460 -2.9972 3.0899 34 1 2.9219 -3.6735 -1.6540 35 1 2.3091 -4.5636 -3.8669 36 1 -1.6549 -3.4566 -3.3314 37 1 -1.1635 -2.5433 -1.0978 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261144384.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:26 Heat of formation + Delta-G solvation = 50.111076 kcal Electronic energy + Delta-G solvation = -19373.569946 eV Core-core repulsion = 16500.922254 eV Total energy + Delta-G solvation = -2872.647692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.38651 -39.00431 -36.10562 -33.22357 -31.76247 -30.71307 -30.48808 -30.16963 -26.56444 -24.30317 -23.41458 -22.50027 -22.36385 -20.79126 -20.58404 -17.39862 -16.73689 -15.96607 -15.53069 -15.02413 -14.93517 -14.70780 -14.16009 -13.96877 -13.55740 -13.25278 -13.16179 -12.88425 -12.80874 -12.53733 -12.15776 -11.95659 -11.52276 -11.08080 -10.92853 -10.81580 -10.62012 -10.36221 -10.27461 -9.46587 -8.89838 -8.75374 -8.72030 -8.56436 -8.38499 -8.36024 -7.48617 -6.60898 -4.40502 1.53497 1.57768 1.94126 2.22499 3.30298 3.32189 3.45169 3.95854 4.31146 4.64094 5.00913 5.04680 5.09538 5.11732 5.12938 5.25778 5.39839 5.57184 5.66306 5.71627 5.90347 5.96527 6.02729 6.10347 6.12785 6.26955 6.38130 6.43200 6.44261 6.62910 6.64506 6.65689 6.92486 7.03230 7.18360 7.28781 7.52860 7.66724 7.73946 8.21230 8.28204 8.54821 8.69188 9.32684 10.72916 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.013470 B = 0.006362 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.151002 B = 4399.795752 C = 5846.103777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.031 3.969 3 Si 1.070 2.930 4 H -0.288 1.288 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.619 4.619 8 H 0.057 0.943 9 C 0.222 3.778 10 H 0.053 0.947 11 N -0.677 5.677 12 C 0.103 3.897 13 C -0.067 4.067 14 C -0.102 4.102 15 C -0.125 4.125 16 C -0.131 4.131 17 C -0.124 4.124 18 C -0.114 4.114 19 C 0.023 3.977 20 C -0.159 4.159 21 C 0.080 3.920 22 N -0.512 5.512 23 C 0.086 3.914 24 C -0.176 4.176 25 H 0.272 0.728 26 H 0.332 0.668 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.316 -8.419 5.517 11.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.177 4.177 3 Si 0.898 3.102 4 H -0.214 1.214 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.658 4.658 8 H 0.075 0.925 9 C 0.113 3.887 10 H 0.071 0.929 11 N -0.307 5.307 12 C -0.026 4.026 13 C -0.068 4.068 14 C -0.121 4.121 15 C -0.143 4.143 16 C -0.149 4.149 17 C -0.142 4.142 18 C -0.133 4.133 19 C 0.014 3.986 20 C -0.179 4.179 21 C -0.076 4.076 22 N -0.223 5.223 23 C -0.070 4.070 24 C -0.197 4.197 25 H 0.084 0.916 26 H 0.148 0.852 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.416 -7.609 4.618 9.936 hybrid contribution 0.950 -0.354 0.907 1.361 sum 5.366 -7.963 5.525 11.078 Atomic orbital electron populations 1.70786 1.06857 1.31270 1.43970 1.25874 0.96404 1.02812 0.92600 0.83511 0.74588 0.74809 0.77279 1.21382 1.21120 1.21046 1.22469 0.94964 0.91607 1.56731 0.92480 1.18394 0.94603 0.88616 0.87040 0.92884 1.60905 1.13326 1.53749 1.02674 1.20730 0.97773 0.95241 0.88870 1.20077 0.94459 0.95338 0.96879 1.21064 1.00002 0.93123 0.97900 1.21105 0.94329 0.99243 0.99635 1.21055 0.95798 0.96839 1.01231 1.21078 0.99513 0.94083 0.99486 1.21140 0.93749 0.99674 0.98739 1.20910 0.91539 0.87834 0.98284 1.21725 1.00317 1.00658 0.95203 1.22484 0.93230 0.97740 0.94152 1.67522 1.01345 1.17462 1.35928 1.22452 0.97911 0.95239 0.91415 1.21930 0.97587 1.02367 0.97803 0.91555 0.85171 0.93606 0.91355 0.86186 0.86534 0.86674 0.86515 0.86167 0.86115 0.84190 0.84085 0.85908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.72 13.62 55.43 0.75 -23.96 16 2 C 0.03 0.81 5.45 -17.82 -0.10 0.71 16 3 Si 1.07 23.79 29.91 -169.99 -5.08 18.70 16 4 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.62 -15.55 8.09 -34.44 -0.28 -15.83 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.22 5.03 1.99 -70.02 -0.14 4.89 16 10 H 0.05 1.31 6.13 -51.93 -0.32 0.99 16 11 N -0.68 -13.35 5.85 -110.46 -0.65 -14.00 16 12 C 0.10 1.86 5.61 -4.98 -0.03 1.83 16 13 C -0.07 -1.05 5.39 -104.62 -0.56 -1.62 16 14 C -0.10 -1.47 9.70 -39.58 -0.38 -1.86 16 15 C -0.13 -1.57 10.05 -39.58 -0.40 -1.97 16 16 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 17 C -0.12 -1.56 10.05 -39.59 -0.40 -1.95 16 18 C -0.11 -1.66 9.70 -39.58 -0.38 -2.04 16 19 C 0.02 0.52 4.95 -104.32 -0.52 0.00 16 20 C -0.16 -3.21 9.40 -39.44 -0.37 -3.58 16 21 C 0.08 1.51 11.18 -17.55 -0.20 1.32 16 22 N -0.51 -10.25 10.36 -13.25 -0.14 -10.39 16 23 C 0.09 1.68 11.18 -17.55 -0.20 1.48 16 24 C -0.18 -3.72 9.45 -39.44 -0.37 -4.09 16 25 H 0.27 7.37 5.53 -40.82 -0.23 7.15 16 26 H 0.33 6.50 7.96 -39.29 -0.31 6.18 16 27 H 0.05 0.89 7.94 -51.93 -0.41 0.48 16 28 H 0.07 1.24 8.00 -51.93 -0.42 0.82 16 29 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 31 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.12 1.69 8.06 -52.48 -0.42 1.26 16 34 H 0.12 2.29 7.59 -52.48 -0.40 1.89 16 35 H 0.14 2.18 8.06 -52.48 -0.42 1.76 16 36 H 0.14 2.30 8.06 -52.48 -0.42 1.88 16 37 H 0.12 2.55 7.28 -52.49 -0.38 2.17 16 LS Contribution 317.87 15.07 4.79 4.79 Total: -1.00 -28.28 317.87 -9.67 -37.95 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -4.63 Total: 11.57 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: -4.72 Total: -24.66 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.03 Total: -48.35 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -5.08 Total: 18.70 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.28 -9.67 -37.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261144384.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.058 kcal (2) G-P(sol) polarization free energy of solvation -28.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds