Wall clock time and date at job start Mon Mar 30 2020 07:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00089 * 2 1 4 4 H 1.48497 * 109.46981 * 179.72848 * 3 2 1 5 5 H 1.48507 * 109.47088 * 299.72540 * 3 2 1 6 6 H 1.48494 * 109.47429 * 59.72310 * 3 2 1 7 7 C 1.37876 * 119.99806 * 179.72940 * 2 1 3 8 8 H 1.07999 * 120.00428 * 173.51168 * 7 2 1 9 9 C 1.50701 * 120.00064 * 353.50007 * 7 2 1 10 10 H 1.09007 * 109.47091 * 332.35954 * 9 7 2 11 11 N 1.46892 * 109.47364 * 212.35665 * 9 7 2 12 12 C 1.46903 * 111.00377 * 85.00237 * 11 9 7 13 13 C 1.50695 * 109.47075 * 180.02562 * 12 11 9 14 14 C 1.38241 * 119.99974 * 269.72079 * 13 12 11 15 15 C 1.38232 * 119.99654 * 179.76751 * 14 13 12 16 16 C 1.38239 * 120.00434 * 0.51197 * 15 14 13 17 17 C 1.38234 * 119.99618 * 359.74496 * 16 15 14 18 18 C 1.38231 * 120.00203 * 359.97438 * 17 16 15 19 19 C 1.50703 * 109.46802 * 92.35422 * 9 7 2 20 20 C 1.38647 * 120.78912 * 73.96496 * 19 9 7 21 21 C 1.38204 * 119.16181 * 179.75655 * 20 19 9 22 22 N 1.31868 * 120.76446 * 0.52778 * 21 20 19 23 23 C 1.31869 * 121.72390 * 359.74402 * 22 21 20 24 24 C 1.38206 * 120.76860 * 359.97438 * 23 22 21 25 25 H 0.96994 * 120.00208 * 183.79308 * 1 2 3 26 26 H 1.00900 * 111.00063 * 321.04293 * 11 9 7 27 27 H 1.08998 * 109.46941 * 300.00211 * 12 11 9 28 28 H 1.08999 * 109.46802 * 60.00075 * 12 11 9 29 29 H 1.07995 * 119.99931 * 0.02562 * 14 13 12 30 30 H 1.08005 * 119.99699 * 180.23239 * 15 14 13 31 31 H 1.07996 * 120.00022 * 179.72557 * 16 15 14 32 32 H 1.07998 * 119.99632 * 179.97438 * 17 16 15 33 33 H 1.08003 * 119.99918 * 179.97438 * 18 17 16 34 34 H 1.08006 * 120.41875 * 359.97438 * 20 19 9 35 35 H 1.08003 * 119.61692 * 180.25079 * 21 20 19 36 36 H 1.08003 * 119.61673 * 179.97438 * 23 22 21 37 37 H 1.07998 * 120.41969 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0066 5 1 1.8955 2.3936 -1.2159 6 1 1.8854 2.3994 1.2090 7 6 2.0045 -1.1940 0.0056 8 1 3.0793 -1.1977 -0.1000 9 6 1.2582 -2.4942 0.1595 10 1 0.3391 -2.3216 0.7196 11 7 2.0982 -3.4584 0.8823 12 6 1.9682 -3.2848 2.3352 13 6 2.8429 -4.2884 3.0413 14 6 2.3355 -5.5282 3.3826 15 6 3.1393 -6.4506 4.0260 16 6 4.4472 -6.1295 4.3377 17 6 4.9529 -4.8878 4.0011 18 6 4.1510 -3.9675 3.3525 19 6 0.9207 -3.0439 -1.2025 20 6 1.9004 -3.6152 -2.0000 21 6 1.5525 -4.1134 -3.2413 22 7 0.3087 -4.0403 -3.6730 23 6 -0.6476 -3.4990 -2.9441 24 6 -0.3759 -2.9851 -1.6902 25 1 -0.4850 -0.8381 0.0556 26 1 3.0625 -3.3852 0.5942 27 1 2.2782 -2.2765 2.6097 28 1 0.9295 -3.4379 2.6279 29 1 1.3124 -5.7777 3.1429 30 1 2.7440 -7.4206 4.2894 31 1 5.0738 -6.8485 4.8443 32 1 5.9746 -4.6367 4.2449 33 1 4.5460 -2.9972 3.0899 34 1 2.9219 -3.6735 -1.6540 35 1 2.3091 -4.5636 -3.8669 36 1 -1.6549 -3.4566 -3.3314 37 1 -1.1635 -2.5433 -1.0978 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261144384.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:25 Heat of formation + Delta-G solvation = 34.732687 kcal Electronic energy + Delta-G solvation = -19374.236803 eV Core-core repulsion = 16500.922254 eV Total energy + Delta-G solvation = -2873.314549 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.96061 -40.13121 -37.74964 -34.86848 -33.46576 -32.01930 -31.74602 -31.56180 -28.22039 -26.00413 -25.03695 -24.05840 -23.40869 -22.30591 -21.96718 -19.28682 -18.00744 -17.28677 -17.16000 -16.44053 -16.27785 -15.97911 -15.79905 -15.61154 -15.15362 -14.70195 -14.40969 -14.37681 -14.25998 -14.08828 -13.44561 -13.32515 -13.08575 -12.81313 -12.62202 -12.14684 -12.00235 -11.87341 -11.78064 -11.32348 -10.74913 -10.33899 -10.20659 -9.93285 -9.78984 -9.66366 -9.21151 -8.62502 -6.45737 0.36503 0.44690 0.53616 0.59727 1.48423 1.54855 1.70196 2.47490 2.86685 3.02543 3.14773 3.57226 3.66985 3.92815 4.02022 4.05735 4.19980 4.30416 4.31937 4.37971 4.42467 4.53419 4.65174 4.66500 4.79108 4.84704 4.85386 5.00904 5.13982 5.20242 5.36799 5.57927 5.62696 5.63608 5.79176 5.80063 5.85783 5.96387 6.15333 6.33333 6.47733 6.63224 7.12270 7.34388 8.67899 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.013470 B = 0.006362 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.151002 B = 4399.795752 C = 5846.103777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.016 4.016 3 Si 1.110 2.890 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.279 1.279 7 C -0.619 4.619 8 H 0.052 0.948 9 C 0.229 3.771 10 H 0.024 0.976 11 N -0.668 5.668 12 C 0.110 3.890 13 C -0.087 4.087 14 C -0.116 4.116 15 C -0.124 4.124 16 C -0.125 4.125 17 C -0.123 4.123 18 C -0.128 4.128 19 C 0.001 3.999 20 C -0.167 4.167 21 C 0.086 3.914 22 N -0.519 5.519 23 C 0.089 3.911 24 C -0.194 4.194 25 H 0.264 0.736 26 H 0.333 0.667 27 H 0.023 0.977 28 H 0.058 0.942 29 H 0.118 0.882 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.116 0.884 34 H 0.130 0.870 35 H 0.179 0.821 36 H 0.172 0.828 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.150 -9.993 5.484 13.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.218 4.218 3 Si 0.933 3.067 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.205 1.205 7 C -0.658 4.658 8 H 0.070 0.930 9 C 0.120 3.880 10 H 0.042 0.958 11 N -0.297 5.297 12 C -0.019 4.019 13 C -0.088 4.088 14 C -0.135 4.135 15 C -0.142 4.142 16 C -0.143 4.143 17 C -0.141 4.141 18 C -0.147 4.147 19 C -0.008 4.008 20 C -0.187 4.187 21 C -0.070 4.070 22 N -0.229 5.229 23 C -0.067 4.067 24 C -0.215 4.215 25 H 0.076 0.924 26 H 0.150 0.850 27 H 0.042 0.958 28 H 0.076 0.924 29 H 0.136 0.864 30 H 0.162 0.838 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.134 0.866 34 H 0.148 0.852 35 H 0.196 0.804 36 H 0.189 0.811 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.258 -9.204 4.593 12.040 hybrid contribution 0.408 0.008 0.951 1.035 sum 6.667 -9.196 5.543 12.639 Atomic orbital electron populations 1.70867 1.07693 1.30902 1.46473 1.27031 0.96545 1.05948 0.92263 0.83003 0.74490 0.71923 0.77295 1.19680 1.21109 1.20524 1.22676 0.94770 0.92758 1.55584 0.93011 1.18169 0.93508 0.88619 0.87706 0.95794 1.60891 1.12915 1.52371 1.03490 1.20621 0.97923 0.95159 0.88156 1.19870 0.94889 0.95514 0.98514 1.21158 1.00437 0.93169 0.98732 1.21433 0.94487 0.99794 0.98476 1.21492 0.95777 0.97012 0.99989 1.21399 1.00445 0.93866 0.98342 1.21214 0.93558 1.00274 0.99642 1.20941 0.92686 0.89242 0.97976 1.21883 1.00364 1.00745 0.95718 1.23056 0.93681 0.96402 0.93837 1.67652 1.01810 1.17548 1.35909 1.22884 0.99311 0.93949 0.90529 1.22015 0.97324 1.03314 0.98810 0.92437 0.85029 0.95843 0.92359 0.86427 0.83845 0.83283 0.83887 0.86597 0.85167 0.80405 0.81073 0.86714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.81 13.62 21.45 0.29 -52.52 16 2 C -0.02 -0.86 5.45 84.65 0.46 -0.40 16 3 Si 1.11 48.42 29.91 68.60 2.05 50.48 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.62 -31.95 8.09 25.60 0.21 -31.74 16 8 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 9 C 0.23 10.82 1.99 43.43 0.09 10.90 16 10 H 0.02 1.27 6.13 -2.38 -0.01 1.25 16 11 N -0.67 -27.25 5.85 -503.39 -2.95 -30.19 16 12 C 0.11 4.21 5.61 85.55 0.48 4.69 16 13 C -0.09 -2.78 5.39 -19.87 -0.11 -2.89 16 14 C -0.12 -3.29 9.70 22.27 0.22 -3.08 16 15 C -0.12 -2.80 10.05 22.27 0.22 -2.57 16 16 C -0.12 -2.54 10.05 22.27 0.22 -2.32 16 17 C -0.12 -2.78 10.05 22.27 0.22 -2.55 16 18 C -0.13 -3.65 9.70 22.27 0.22 -3.43 16 19 C 0.00 0.03 4.95 -19.67 -0.10 -0.07 16 20 C -0.17 -6.63 9.40 22.36 0.21 -6.42 16 21 C 0.09 3.08 11.18 84.68 0.95 4.03 16 22 N -0.52 -19.77 10.36 -195.84 -2.03 -21.80 16 23 C 0.09 3.40 11.18 84.68 0.95 4.34 16 24 C -0.19 -8.34 9.45 22.36 0.21 -8.13 16 25 H 0.26 15.07 5.53 -92.71 -0.51 14.56 16 26 H 0.33 13.33 7.96 -89.69 -0.71 12.62 16 27 H 0.02 0.98 7.94 -2.39 -0.02 0.96 16 28 H 0.06 2.27 8.00 -2.39 -0.02 2.25 16 29 H 0.12 3.27 8.06 -2.91 -0.02 3.25 16 30 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 31 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 32 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 33 H 0.12 3.29 8.06 -2.91 -0.02 3.27 16 34 H 0.13 4.83 7.59 -2.91 -0.02 4.80 16 35 H 0.18 4.91 8.06 -2.91 -0.02 4.89 16 36 H 0.17 5.30 8.06 -2.91 -0.02 5.28 16 37 H 0.11 5.01 7.28 -2.91 -0.02 4.99 16 Total: -1.00 -61.62 317.87 2.43 -59.19 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: 0.61 Total: 34.49 kcal Atomic # 6 Polarization: -44.09 SS G_CDS: 4.45 Total: -39.65 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -4.68 Total: -104.51 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.05 Total: 50.48 kcal Total: -61.62 2.43 -59.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261144384.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.926 kcal (2) G-P(sol) polarization free energy of solvation -61.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds