Wall clock time and date at job start Mon Mar 30 2020 07:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99951 * 2 1 4 4 H 1.48501 * 109.47253 * 92.12507 * 3 2 1 5 5 H 1.48503 * 109.47143 * 212.12468 * 3 2 1 6 6 H 1.48498 * 109.47318 * 332.12494 * 3 2 1 7 7 C 1.37876 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99513 * 6.96465 * 7 2 1 9 9 C 1.50695 * 120.00147 * 186.96748 * 7 2 1 10 10 H 1.08996 * 109.47326 * 3.09359 * 9 7 2 11 11 N 1.46901 * 109.46877 * 123.09119 * 9 7 2 12 12 C 1.46904 * 111.00017 * 272.63826 * 11 9 7 13 13 C 1.50701 * 109.47001 * 180.02562 * 12 11 9 14 14 C 1.38236 * 119.99843 * 269.73108 * 13 12 11 15 15 C 1.38235 * 119.99979 * 179.77311 * 14 13 12 16 16 C 1.38239 * 119.99674 * 0.49573 * 15 14 13 17 17 C 1.38228 * 120.00045 * 359.75246 * 16 15 14 18 18 C 1.38230 * 119.99947 * 90.00126 * 13 12 11 19 19 C 1.50698 * 109.47102 * 243.08876 * 9 7 2 20 20 C 1.38651 * 120.79412 * 286.59041 * 19 9 7 21 21 C 1.38201 * 119.16397 * 179.75640 * 20 19 9 22 22 N 1.31865 * 120.76317 * 0.52738 * 21 20 19 23 23 C 1.31872 * 121.73092 * 359.74939 * 22 21 20 24 24 C 1.38205 * 120.75705 * 359.97031 * 23 22 21 25 25 H 0.96998 * 119.99600 * 359.97438 * 1 2 3 26 26 H 1.00902 * 111.00427 * 36.59736 * 11 9 7 27 27 H 1.08996 * 109.46982 * 300.00453 * 12 11 9 28 28 H 1.09002 * 109.46637 * 60.00568 * 12 11 9 29 29 H 1.08007 * 119.99866 * 359.97438 * 14 13 12 30 30 H 1.08001 * 120.00260 * 180.22967 * 15 14 13 31 31 H 1.08004 * 119.99464 * 179.72954 * 16 15 14 32 32 H 1.08005 * 120.00145 * 179.97438 * 17 16 15 33 33 H 1.07994 * 120.00260 * 0.02562 * 18 13 12 34 34 H 1.08005 * 120.41349 * 0.02562 * 20 19 9 35 35 H 1.08003 * 119.61420 * 180.25614 * 21 20 19 36 36 H 1.07993 * 119.62531 * 179.97438 * 23 22 21 37 37 H 1.08006 * 120.41588 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5416 2.0205 1.3991 5 1 3.5235 1.4536 -0.7445 6 1 1.4249 2.6652 -0.6546 7 6 2.0046 -1.1940 -0.0005 8 1 1.4705 -2.1258 -0.1144 9 6 3.5032 -1.1989 0.1578 10 1 3.8554 -0.1793 0.3137 11 7 3.8706 -2.0261 1.3148 12 6 3.8590 -1.2350 2.5525 13 6 4.2406 -2.1151 3.7148 14 6 3.2629 -2.7930 4.4186 15 6 3.6134 -3.6040 5.4818 16 6 4.9406 -3.7291 5.8476 17 6 5.9178 -3.0471 5.1470 18 6 5.5678 -2.2401 4.0806 19 6 4.1379 -1.7650 -1.0863 20 6 4.0778 -3.1231 -1.3588 21 6 4.6671 -3.6053 -2.5122 22 7 5.2895 -2.7917 -3.3425 23 6 5.3712 -1.4957 -3.1128 24 6 4.8009 -0.9408 -1.9828 25 1 -0.4849 0.8401 0.0004 26 1 3.2640 -2.8287 1.3928 27 1 4.5735 -0.4164 2.4671 28 1 2.8602 -0.8301 2.7155 29 1 2.2255 -2.6916 4.1358 30 1 2.8499 -4.1366 6.0294 31 1 5.2139 -4.3593 6.6810 32 1 6.9547 -3.1445 5.4330 33 1 6.3312 -1.7068 3.5337 34 1 3.5730 -3.7951 -0.6805 35 1 4.6210 -4.6613 -2.7337 36 1 5.8896 -0.8606 -3.8157 37 1 4.8708 0.1214 -1.8003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261144385.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:29 Heat of formation + Delta-G solvation = 55.478863 kcal Electronic energy + Delta-G solvation = -19396.775373 eV Core-core repulsion = 16524.360446 eV Total energy + Delta-G solvation = -2872.414927 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.46630 -38.98303 -36.05806 -32.96932 -32.12459 -30.66976 -30.56241 -30.23548 -27.23554 -24.56602 -23.24727 -22.65231 -22.32332 -20.77590 -20.21920 -17.47146 -16.63150 -16.01406 -15.50893 -15.14546 -14.97655 -14.87492 -14.55240 -13.97652 -13.37272 -13.21666 -13.13739 -12.98355 -12.91467 -12.50831 -12.15271 -12.01108 -11.71298 -11.19313 -11.06958 -10.97869 -10.71112 -10.61370 -10.01490 -9.66635 -9.07091 -8.77865 -8.71056 -8.67537 -8.48432 -8.44334 -7.51262 -6.38440 -4.41957 1.57248 1.61995 1.83313 2.10504 3.07470 3.15053 3.18335 3.99574 4.13710 4.52668 4.95175 5.03115 5.04378 5.09146 5.14378 5.27470 5.40750 5.49018 5.68121 5.75470 5.83739 5.90209 5.92255 6.06305 6.15305 6.21389 6.32225 6.34124 6.40630 6.48973 6.67007 6.69181 6.89051 6.98457 7.14461 7.22944 7.29755 7.43872 7.77677 8.10399 8.33779 8.59611 8.66217 9.22410 10.73365 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.013892 B = 0.006642 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.026406 B = 4214.620893 C = 5458.886855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.082 3.918 3 Si 0.869 3.131 4 H -0.272 1.272 5 H -0.261 1.261 6 H -0.283 1.283 7 C -0.540 4.540 8 H 0.080 0.920 9 C 0.205 3.795 10 H 0.054 0.946 11 N -0.679 5.679 12 C 0.098 3.902 13 C -0.067 4.067 14 C -0.112 4.112 15 C -0.123 4.123 16 C -0.131 4.131 17 C -0.126 4.126 18 C -0.103 4.103 19 C 0.024 3.976 20 C -0.154 4.154 21 C 0.084 3.916 22 N -0.510 5.510 23 C 0.088 3.912 24 C -0.187 4.187 25 H 0.268 0.732 26 H 0.337 0.663 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.006 -3.579 6.750 11.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.124 4.124 3 Si 0.696 3.304 4 H -0.197 1.197 5 H -0.185 1.185 6 H -0.209 1.209 7 C -0.578 4.578 8 H 0.098 0.902 9 C 0.097 3.903 10 H 0.071 0.929 11 N -0.309 5.309 12 C -0.031 4.031 13 C -0.067 4.067 14 C -0.131 4.131 15 C -0.141 4.141 16 C -0.149 4.149 17 C -0.144 4.144 18 C -0.122 4.122 19 C 0.015 3.985 20 C -0.174 4.174 21 C -0.072 4.072 22 N -0.220 5.220 23 C -0.069 4.069 24 C -0.207 4.207 25 H 0.079 0.921 26 H 0.155 0.845 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.141 0.859 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.885 -3.712 5.890 12.091 hybrid contribution -1.175 1.418 0.826 2.018 sum 8.710 -2.294 6.716 11.235 Atomic orbital electron populations 1.69892 1.06343 1.27542 1.47887 1.25110 0.94770 0.99061 0.93430 0.86994 0.80535 0.83777 0.79108 1.19744 1.18537 1.20928 1.21449 0.88903 0.95339 1.52144 0.90216 1.18628 0.94127 0.92688 0.84829 0.92855 1.61065 1.57833 1.10373 1.01606 1.20773 1.00300 0.94333 0.87725 1.20028 0.93229 0.97358 0.96094 1.21183 0.99642 0.96701 0.95558 1.21091 0.96154 0.99219 0.97672 1.21052 0.93293 1.00370 1.00195 1.21087 0.98999 0.97874 0.96451 1.21047 0.95843 0.98707 0.96573 1.20714 0.88477 0.92961 0.96373 1.21793 1.01190 0.96189 0.98257 1.22542 0.94602 0.99051 0.90962 1.67538 1.18021 1.04875 1.31609 1.22455 0.97396 0.91471 0.95531 1.21990 1.01065 1.00891 0.96763 0.92149 0.84498 0.91552 0.93415 0.85928 0.86490 0.86719 0.86595 0.86232 0.85608 0.83921 0.83965 0.85947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.05 13.96 55.43 0.77 -24.27 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 3 Si 0.87 19.83 27.01 -169.99 -4.59 15.24 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.26 -5.62 5.85 56.52 0.33 -5.29 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.54 -13.71 8.67 -34.44 -0.30 -14.01 16 8 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 9 C 0.21 4.44 2.17 -70.02 -0.15 4.29 16 10 H 0.05 1.18 4.24 -51.93 -0.22 0.96 16 11 N -0.68 -13.06 5.85 -110.46 -0.65 -13.71 16 12 C 0.10 1.76 5.61 -4.97 -0.03 1.73 16 13 C -0.07 -1.05 5.39 -104.63 -0.56 -1.62 16 14 C -0.11 -1.67 9.70 -39.58 -0.38 -2.06 16 15 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 16 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 17 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 18 C -0.10 -1.48 9.70 -39.58 -0.38 -1.86 16 19 C 0.02 0.49 4.95 -104.32 -0.52 -0.02 16 20 C -0.15 -2.94 9.39 -39.44 -0.37 -3.31 16 21 C 0.08 1.50 11.18 -17.55 -0.20 1.30 16 22 N -0.51 -9.53 10.36 -13.26 -0.14 -9.67 16 23 C 0.09 1.57 11.18 -17.55 -0.20 1.38 16 24 C -0.19 -3.62 9.77 -39.44 -0.39 -4.00 16 25 H 0.27 7.19 8.31 -40.82 -0.34 6.86 16 26 H 0.34 6.54 8.11 -39.29 -0.32 6.22 16 27 H 0.07 1.16 8.00 -51.93 -0.42 0.75 16 28 H 0.05 0.95 8.03 -51.93 -0.42 0.53 16 29 H 0.12 1.83 8.06 -52.48 -0.42 1.40 16 30 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.11 1.10 8.06 -52.48 -0.42 0.67 16 32 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 33 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.13 2.27 7.70 -52.48 -0.40 1.86 16 35 H 0.14 2.07 8.06 -52.48 -0.42 1.65 16 36 H 0.14 2.07 8.06 -52.49 -0.42 1.64 16 37 H 0.12 2.27 7.17 -52.48 -0.38 1.89 16 LS Contribution 316.59 15.07 4.77 4.77 Total: -1.00 -28.42 316.59 -9.34 -37.76 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -4.74 Total: 11.94 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -4.77 Total: -22.05 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.01 Total: -47.65 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.59 Total: 15.24 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.42 -9.34 -37.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261144385.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.235 kcal (2) G-P(sol) polarization free energy of solvation -28.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds