Wall clock time and date at job start Mon Mar 30 2020 07:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99951 * 2 1 4 4 H 1.48501 * 109.47253 * 92.12507 * 3 2 1 5 5 H 1.48503 * 109.47143 * 212.12468 * 3 2 1 6 6 H 1.48498 * 109.47318 * 332.12494 * 3 2 1 7 7 C 1.37876 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99513 * 6.96465 * 7 2 1 9 9 C 1.50695 * 120.00147 * 186.96748 * 7 2 1 10 10 H 1.08996 * 109.47326 * 3.09359 * 9 7 2 11 11 N 1.46901 * 109.46877 * 123.09119 * 9 7 2 12 12 C 1.46904 * 111.00017 * 272.63826 * 11 9 7 13 13 C 1.50701 * 109.47001 * 180.02562 * 12 11 9 14 14 C 1.38236 * 119.99843 * 269.73108 * 13 12 11 15 15 C 1.38235 * 119.99979 * 179.77311 * 14 13 12 16 16 C 1.38239 * 119.99674 * 0.49573 * 15 14 13 17 17 C 1.38228 * 120.00045 * 359.75246 * 16 15 14 18 18 C 1.38230 * 119.99947 * 90.00126 * 13 12 11 19 19 C 1.50698 * 109.47102 * 243.08876 * 9 7 2 20 20 C 1.38651 * 120.79412 * 286.59041 * 19 9 7 21 21 C 1.38201 * 119.16397 * 179.75640 * 20 19 9 22 22 N 1.31865 * 120.76317 * 0.52738 * 21 20 19 23 23 C 1.31872 * 121.73092 * 359.74939 * 22 21 20 24 24 C 1.38205 * 120.75705 * 359.97031 * 23 22 21 25 25 H 0.96998 * 119.99600 * 359.97438 * 1 2 3 26 26 H 1.00902 * 111.00427 * 36.59736 * 11 9 7 27 27 H 1.08996 * 109.46982 * 300.00453 * 12 11 9 28 28 H 1.09002 * 109.46637 * 60.00568 * 12 11 9 29 29 H 1.08007 * 119.99866 * 359.97438 * 14 13 12 30 30 H 1.08001 * 120.00260 * 180.22967 * 15 14 13 31 31 H 1.08004 * 119.99464 * 179.72954 * 16 15 14 32 32 H 1.08005 * 120.00145 * 179.97438 * 17 16 15 33 33 H 1.07994 * 120.00260 * 0.02562 * 18 13 12 34 34 H 1.08005 * 120.41349 * 0.02562 * 20 19 9 35 35 H 1.08003 * 119.61420 * 180.25614 * 21 20 19 36 36 H 1.07993 * 119.62531 * 179.97438 * 23 22 21 37 37 H 1.08006 * 120.41588 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5416 2.0205 1.3991 5 1 3.5235 1.4536 -0.7445 6 1 1.4249 2.6652 -0.6546 7 6 2.0046 -1.1940 -0.0005 8 1 1.4705 -2.1258 -0.1144 9 6 3.5032 -1.1989 0.1578 10 1 3.8554 -0.1793 0.3137 11 7 3.8706 -2.0261 1.3148 12 6 3.8590 -1.2350 2.5525 13 6 4.2406 -2.1151 3.7148 14 6 3.2629 -2.7930 4.4186 15 6 3.6134 -3.6040 5.4818 16 6 4.9406 -3.7291 5.8476 17 6 5.9178 -3.0471 5.1470 18 6 5.5678 -2.2401 4.0806 19 6 4.1379 -1.7650 -1.0863 20 6 4.0778 -3.1231 -1.3588 21 6 4.6671 -3.6053 -2.5122 22 7 5.2895 -2.7917 -3.3425 23 6 5.3712 -1.4957 -3.1128 24 6 4.8009 -0.9408 -1.9828 25 1 -0.4849 0.8401 0.0004 26 1 3.2640 -2.8287 1.3928 27 1 4.5735 -0.4164 2.4671 28 1 2.8602 -0.8301 2.7155 29 1 2.2255 -2.6916 4.1358 30 1 2.8499 -4.1366 6.0294 31 1 5.2139 -4.3593 6.6810 32 1 6.9547 -3.1445 5.4330 33 1 6.3312 -1.7068 3.5337 34 1 3.5730 -3.7951 -0.6805 35 1 4.6210 -4.6613 -2.7337 36 1 5.8896 -0.8606 -3.8157 37 1 4.8708 0.1214 -1.8003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261144385.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:28 Heat of formation + Delta-G solvation = 38.819062 kcal Electronic energy + Delta-G solvation = -19397.497796 eV Core-core repulsion = 16524.360446 eV Total energy + Delta-G solvation = -2873.137350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.93224 -40.10084 -37.63707 -34.65028 -33.80676 -31.98637 -31.71618 -31.58572 -28.92205 -26.12871 -24.81790 -24.08620 -23.38025 -21.96343 -21.85378 -19.38418 -17.90825 -17.31104 -17.05133 -16.78425 -16.37105 -16.10533 -15.89062 -15.44091 -14.95948 -14.68406 -14.52878 -14.36725 -14.23284 -13.96301 -13.65580 -13.34253 -13.19903 -12.89658 -12.68732 -12.52207 -11.92618 -11.83368 -11.76685 -11.49602 -10.95253 -10.31654 -10.25221 -9.90176 -9.76254 -9.64374 -9.14901 -8.43255 -6.49897 0.38830 0.47188 0.56418 0.60068 1.25221 1.27849 1.36100 2.21322 2.85160 2.95736 3.12230 3.58943 3.71879 3.95984 4.03438 4.07104 4.22692 4.31499 4.34505 4.39254 4.43698 4.56562 4.58154 4.68762 4.78726 4.86306 4.88277 5.04050 5.17088 5.23292 5.31045 5.38244 5.62779 5.66385 5.68023 5.82088 5.94968 5.97218 6.17847 6.29042 6.56071 6.64101 7.15850 7.18187 8.72210 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.013892 B = 0.006642 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.026406 B = 4214.620893 C = 5458.886855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.028 3.972 3 Si 0.923 3.077 4 H -0.264 1.264 5 H -0.237 1.237 6 H -0.285 1.285 7 C -0.534 4.534 8 H 0.040 0.960 9 C 0.213 3.787 10 H 0.051 0.949 11 N -0.667 5.667 12 C 0.102 3.898 13 C -0.087 4.087 14 C -0.131 4.131 15 C -0.125 4.125 16 C -0.125 4.125 17 C -0.123 4.123 18 C -0.113 4.113 19 C -0.002 4.002 20 C -0.165 4.165 21 C 0.088 3.912 22 N -0.519 5.519 23 C 0.093 3.907 24 C -0.198 4.198 25 H 0.268 0.732 26 H 0.334 0.666 27 H 0.071 0.929 28 H 0.019 0.981 29 H 0.109 0.891 30 H 0.139 0.861 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.176 0.824 36 H 0.179 0.821 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.826 -4.039 7.273 14.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.173 4.173 3 Si 0.747 3.253 4 H -0.189 1.189 5 H -0.161 1.161 6 H -0.211 1.211 7 C -0.573 4.573 8 H 0.058 0.942 9 C 0.105 3.895 10 H 0.069 0.931 11 N -0.296 5.296 12 C -0.027 4.027 13 C -0.087 4.087 14 C -0.150 4.150 15 C -0.143 4.143 16 C -0.143 4.143 17 C -0.141 4.141 18 C -0.131 4.131 19 C -0.011 4.011 20 C -0.185 4.185 21 C -0.067 4.067 22 N -0.229 5.229 23 C -0.064 4.064 24 C -0.219 4.219 25 H 0.077 0.923 26 H 0.151 0.849 27 H 0.089 0.911 28 H 0.037 0.963 29 H 0.127 0.873 30 H 0.157 0.843 31 H 0.166 0.834 32 H 0.164 0.836 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.193 0.807 36 H 0.196 0.804 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 12.732 -4.186 6.418 14.860 hybrid contribution -2.020 1.409 0.704 2.561 sum 10.713 -2.778 7.121 13.160 Atomic orbital electron populations 1.70033 1.08157 1.28333 1.50553 1.25892 0.95382 1.02660 0.93342 0.86113 0.80128 0.79348 0.79747 1.18904 1.16071 1.21142 1.21584 0.91136 0.93650 1.50903 0.94193 1.18466 0.91562 0.93153 0.86351 0.93099 1.61069 1.56943 1.09916 1.01674 1.20735 0.98812 0.94927 0.88223 1.19863 0.94453 0.98390 0.96027 1.21208 0.98952 0.97941 0.96876 1.21372 0.97558 0.98500 0.96856 1.21476 0.92550 0.99772 1.00492 1.21447 1.00729 0.96620 0.95319 1.21182 0.95039 0.99403 0.97496 1.20745 0.90068 0.94124 0.96206 1.21910 1.01673 0.95787 0.99149 1.23015 0.93223 1.00556 0.89954 1.67660 1.18156 1.05357 1.31716 1.22987 0.96427 0.91604 0.95356 1.22172 1.01346 1.01237 0.97109 0.92255 0.84907 0.91081 0.96308 0.87326 0.84322 0.83384 0.83626 0.85679 0.85509 0.80735 0.80436 0.85172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.47 13.96 21.45 0.30 -55.17 16 2 C 0.03 1.53 5.47 84.65 0.46 1.99 16 3 Si 0.92 41.27 27.01 68.60 1.85 43.12 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.24 -9.61 5.85 99.48 0.58 -9.03 16 6 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.53 -28.28 8.67 25.60 0.22 -28.06 16 8 H 0.04 2.38 8.06 -2.91 -0.02 2.36 16 9 C 0.21 9.37 2.17 43.42 0.09 9.46 16 10 H 0.05 2.25 4.24 -2.39 -0.01 2.24 16 11 N -0.67 -26.28 5.85 -503.38 -2.95 -29.22 16 12 C 0.10 3.78 5.61 85.56 0.48 4.26 16 13 C -0.09 -2.76 5.39 -19.87 -0.11 -2.87 16 14 C -0.13 -3.95 9.70 22.27 0.22 -3.74 16 15 C -0.13 -3.01 10.05 22.27 0.22 -2.79 16 16 C -0.12 -2.61 10.05 22.27 0.22 -2.38 16 17 C -0.12 -2.72 10.05 22.27 0.22 -2.50 16 18 C -0.11 -3.07 9.70 22.27 0.22 -2.85 16 19 C 0.00 -0.10 4.95 -19.67 -0.10 -0.20 16 20 C -0.16 -6.21 9.39 22.36 0.21 -6.00 16 21 C 0.09 2.96 11.18 84.68 0.95 3.91 16 22 N -0.52 -18.07 10.36 -195.85 -2.03 -20.10 16 23 C 0.09 3.06 11.18 84.68 0.95 4.00 16 24 C -0.20 -7.36 9.77 22.36 0.22 -7.14 16 25 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 26 H 0.33 13.55 8.11 -89.69 -0.73 12.82 16 27 H 0.07 2.51 8.00 -2.39 -0.02 2.49 16 28 H 0.02 0.79 8.03 -2.39 -0.02 0.77 16 29 H 0.11 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 34 H 0.13 4.63 7.70 -2.91 -0.02 4.61 16 35 H 0.18 4.61 8.06 -2.91 -0.02 4.58 16 36 H 0.18 4.48 8.06 -2.91 -0.02 4.46 16 37 H 0.13 4.54 7.17 -2.91 -0.02 4.52 16 Total: -1.00 -63.19 316.59 1.88 -61.32 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: 0.22 Total: 34.95 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: 4.48 Total: -34.90 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -4.67 Total: -104.49 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.85 Total: 43.12 kcal Total: -63.19 1.88 -61.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261144385.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.137 kcal (2) G-P(sol) polarization free energy of solvation -63.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds