Wall clock time and date at job start Mon Mar 30 2020 06:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00312 * 2 1 4 4 H 1.48504 * 109.47137 * 270.00060 * 3 2 1 5 5 H 1.48493 * 109.47038 * 30.00070 * 3 2 1 6 6 H 1.48504 * 109.47040 * 150.00221 * 3 2 1 7 7 C 1.37885 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99876 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99985 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47161 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47448 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.46862 * 305.00378 * 11 10 9 13 13 C 1.53006 * 109.47223 * 64.99525 * 11 10 9 14 14 C 1.52997 * 109.47164 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46978 * 299.99874 * 14 13 11 16 16 C 1.52996 * 109.46891 * 60.00410 * 15 14 13 17 17 F 1.39904 * 109.47517 * 59.99889 * 16 15 14 18 18 C 1.53001 * 109.47302 * 179.97438 * 16 15 14 19 19 F 1.39895 * 109.47517 * 179.97438 * 18 16 15 20 20 F 1.39901 * 109.47059 * 300.00322 * 18 16 15 21 21 F 1.39904 * 109.46640 * 59.99701 * 18 16 15 22 22 C 1.52997 * 109.47482 * 184.99813 * 11 10 9 23 23 H 0.97002 * 119.99810 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46835 * 60.00440 * 9 7 2 25 25 H 1.09007 * 109.46907 * 300.00260 * 9 7 2 26 26 H 1.09001 * 109.47166 * 59.99426 * 10 9 7 27 27 H 1.09004 * 109.46717 * 300.00378 * 10 9 7 28 28 H 1.09001 * 109.47002 * 60.00080 * 13 11 10 29 29 H 1.09000 * 109.47050 * 300.00346 * 13 11 10 30 30 H 1.09002 * 109.47045 * 180.02562 * 14 13 11 31 31 H 1.09001 * 109.47375 * 59.99966 * 14 13 11 32 32 H 1.08992 * 109.47056 * 300.00064 * 15 14 13 33 33 H 1.09004 * 109.47006 * 180.02562 * 15 14 13 34 34 H 1.09002 * 109.47153 * 59.99783 * 22 11 10 35 35 H 1.09001 * 109.46832 * 299.99974 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0001 11 6 5.5514 -2.6369 0.0001 12 1 5.9147 -2.0475 -0.8417 13 6 6.0614 -2.0270 1.3074 14 6 7.5914 -2.0266 1.3072 15 6 8.1018 -3.4635 1.1814 16 6 7.5918 -4.0732 -0.1258 17 9 8.0578 -3.3166 -1.2064 18 6 8.1026 -5.5099 -0.2520 19 9 7.6358 -6.0676 -1.4470 20 9 9.5016 -5.5090 -0.2523 21 9 7.6370 -6.2668 0.8286 22 6 6.0613 -4.0739 -0.1254 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6799 0.8895 25 1 3.8745 -0.6809 -0.8906 26 1 3.6577 -3.1508 -0.8896 27 1 3.6583 -3.1503 0.8903 28 1 5.6980 -2.6163 2.1493 29 1 5.6981 -1.0033 1.3969 30 1 7.9547 -1.5926 2.2387 31 1 7.9545 -1.4371 0.4653 32 1 7.7387 -4.0530 2.0233 33 1 9.1918 -3.4632 1.1817 34 1 5.6980 -4.5083 -1.0568 35 1 5.6979 -4.6632 0.7165 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261152798.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:58 Heat of formation + Delta-G solvation = -237.273649 kcal Electronic energy + Delta-G solvation = -21641.342196 eV Core-core repulsion = 17751.313852 eV Total energy + Delta-G solvation = -3890.028345 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.50351 -48.34525 -47.88833 -47.67025 -38.39794 -34.19911 -32.26310 -31.48161 -29.48250 -26.08665 -25.26640 -22.47581 -21.94620 -20.28807 -19.75840 -18.59536 -18.55545 -18.20480 -16.69404 -15.98763 -15.79356 -14.84033 -14.67885 -14.65462 -14.34848 -14.33910 -14.23488 -14.09244 -14.01953 -14.01195 -13.35114 -12.80492 -12.63416 -12.47716 -12.37629 -12.08606 -11.61967 -11.36762 -11.18163 -10.94456 -10.64923 -10.44732 -10.26335 -9.92137 -9.65017 -9.46048 -9.14451 -8.53485 -6.04535 -4.02258 2.22853 3.28403 3.30141 3.37649 3.40123 3.53891 3.63026 4.09299 4.30895 4.42406 4.44681 4.91307 4.96020 5.08584 5.15141 5.28230 5.29992 5.43307 5.59506 5.76806 5.79422 5.94443 6.00017 6.21302 6.28182 6.39998 6.54158 6.69781 6.90655 7.30085 7.43489 7.80036 8.54012 9.00877 9.58242 11.09117 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.035581 B = 0.004639 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.746260 B = 6034.271725 C = 6334.558184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.066 3.934 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.096 4.096 11 C -0.086 4.086 12 H 0.076 0.924 13 C -0.122 4.122 14 C -0.117 4.117 15 C -0.141 4.141 16 C 0.090 3.910 17 F -0.174 7.174 18 C 0.434 3.566 19 F -0.173 7.173 20 F -0.177 7.177 21 F -0.171 7.171 22 C -0.138 4.138 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.010 0.990 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.922 -8.979 2.274 21.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.134 4.134 11 C -0.104 4.104 12 H 0.094 0.906 13 C -0.159 4.159 14 C -0.154 4.154 15 C -0.179 4.179 16 C 0.070 3.930 17 F -0.154 7.154 18 C 0.379 3.621 19 F -0.155 7.155 20 F -0.159 7.159 21 F -0.153 7.153 22 C -0.176 4.176 23 H 0.072 0.928 24 H 0.037 0.963 25 H 0.028 0.972 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 18.790 -8.879 2.243 20.903 hybrid contribution 0.519 0.585 -0.239 0.818 sum 19.309 -8.294 2.004 21.110 Atomic orbital electron populations 1.69918 1.06330 1.26846 1.51297 1.25040 0.94706 0.99161 0.94620 0.86784 0.80338 0.83678 0.78511 1.20333 1.21459 1.18989 1.21174 0.89649 0.94401 1.50628 0.91115 1.19614 0.96977 0.92256 0.96276 1.21486 0.90377 1.00184 1.01337 1.21238 0.98222 0.92524 0.98421 0.90599 1.21739 0.93563 1.02831 0.97750 1.21531 0.97044 0.93947 1.02884 1.22203 1.02072 0.99384 0.94199 1.22158 0.98457 0.84631 0.87791 1.92952 1.89999 1.76129 1.56314 1.21125 0.75969 0.90667 0.74319 1.93216 1.88266 1.87246 1.46744 1.93198 1.29540 1.96968 1.96159 1.93199 1.88412 1.78303 1.55338 1.22351 0.88541 1.01533 1.05160 0.92775 0.96310 0.97156 0.92567 0.92521 0.91500 0.90186 0.90740 0.91059 0.88773 0.89856 0.89447 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.53 27.47 -169.99 -4.67 16.87 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.52 -14.65 9.66 -34.44 -0.33 -14.98 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.32 3.80 -27.88 -0.11 -0.43 16 10 C -0.10 -1.78 4.62 -26.74 -0.12 -1.90 16 11 C -0.09 -1.26 2.07 -90.62 -0.19 -1.44 16 12 H 0.08 1.18 7.80 -51.93 -0.41 0.77 16 13 C -0.12 -1.60 4.96 -26.73 -0.13 -1.74 16 14 C -0.12 -1.25 5.80 -26.73 -0.16 -1.40 16 15 C -0.14 -1.39 4.75 -26.73 -0.13 -1.52 16 16 C 0.09 1.04 0.69 -90.60 -0.06 0.98 16 17 F -0.17 -2.32 15.73 2.25 0.04 -2.28 16 18 C 0.43 5.01 2.44 37.16 0.09 5.10 16 19 F -0.17 -2.18 16.78 2.25 0.04 -2.14 16 20 F -0.18 -2.06 16.78 2.25 0.04 -2.02 16 21 F -0.17 -1.89 16.28 2.25 0.04 -1.85 16 22 C -0.14 -1.72 4.04 -26.71 -0.11 -1.83 16 23 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 24 H 0.02 0.42 5.62 -51.93 -0.29 0.13 16 25 H 0.01 0.24 7.57 -51.92 -0.39 -0.16 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 1.18 6.56 -51.93 -0.34 0.84 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.80 7.80 -51.93 -0.41 0.40 16 32 H 0.09 0.82 7.80 -51.93 -0.41 0.41 16 33 H 0.08 0.74 7.80 -51.93 -0.41 0.33 16 34 H 0.09 1.10 7.80 -51.93 -0.41 0.69 16 35 H 0.09 1.06 7.81 -51.93 -0.41 0.66 16 LS Contribution 291.48 15.07 4.39 4.39 Total: -1.00 -29.83 291.48 -5.43 -35.26 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -4.73 Total: -3.77 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -1.34 Total: -17.36 kcal Atomic # 7 Polarization: -27.86 SS G_CDS: 0.77 Total: -27.09 kcal Atomic # 9 Polarization: -8.44 SS G_CDS: 0.15 Total: -8.30 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.83 -5.43 -35.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152798.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.013 kcal (2) G-P(sol) polarization free energy of solvation -29.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds