Wall clock time and date at job start Mon Mar 30 2020 06:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00312 * 2 1 4 4 H 1.48504 * 109.47137 * 270.00060 * 3 2 1 5 5 H 1.48493 * 109.47038 * 30.00070 * 3 2 1 6 6 H 1.48504 * 109.47040 * 150.00221 * 3 2 1 7 7 C 1.37885 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99876 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99985 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47161 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47448 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.46862 * 305.00378 * 11 10 9 13 13 C 1.53006 * 109.47223 * 64.99525 * 11 10 9 14 14 C 1.52997 * 109.47164 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46978 * 299.99874 * 14 13 11 16 16 C 1.52996 * 109.46891 * 60.00410 * 15 14 13 17 17 F 1.39904 * 109.47517 * 59.99889 * 16 15 14 18 18 C 1.53001 * 109.47302 * 179.97438 * 16 15 14 19 19 F 1.39895 * 109.47517 * 179.97438 * 18 16 15 20 20 F 1.39901 * 109.47059 * 300.00322 * 18 16 15 21 21 F 1.39904 * 109.46640 * 59.99701 * 18 16 15 22 22 C 1.52997 * 109.47482 * 184.99813 * 11 10 9 23 23 H 0.97002 * 119.99810 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46835 * 60.00440 * 9 7 2 25 25 H 1.09007 * 109.46907 * 300.00260 * 9 7 2 26 26 H 1.09001 * 109.47166 * 59.99426 * 10 9 7 27 27 H 1.09004 * 109.46717 * 300.00378 * 10 9 7 28 28 H 1.09001 * 109.47002 * 60.00080 * 13 11 10 29 29 H 1.09000 * 109.47050 * 300.00346 * 13 11 10 30 30 H 1.09002 * 109.47045 * 180.02562 * 14 13 11 31 31 H 1.09001 * 109.47375 * 59.99966 * 14 13 11 32 32 H 1.08992 * 109.47056 * 300.00064 * 15 14 13 33 33 H 1.09004 * 109.47006 * 180.02562 * 15 14 13 34 34 H 1.09002 * 109.47153 * 59.99783 * 22 11 10 35 35 H 1.09001 * 109.46832 * 299.99974 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0001 11 6 5.5514 -2.6369 0.0001 12 1 5.9147 -2.0475 -0.8417 13 6 6.0614 -2.0270 1.3074 14 6 7.5914 -2.0266 1.3072 15 6 8.1018 -3.4635 1.1814 16 6 7.5918 -4.0732 -0.1258 17 9 8.0578 -3.3166 -1.2064 18 6 8.1026 -5.5099 -0.2520 19 9 7.6358 -6.0676 -1.4470 20 9 9.5016 -5.5090 -0.2523 21 9 7.6370 -6.2668 0.8286 22 6 6.0613 -4.0739 -0.1254 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6799 0.8895 25 1 3.8745 -0.6809 -0.8906 26 1 3.6577 -3.1508 -0.8896 27 1 3.6583 -3.1503 0.8903 28 1 5.6980 -2.6163 2.1493 29 1 5.6981 -1.0033 1.3969 30 1 7.9547 -1.5926 2.2387 31 1 7.9545 -1.4371 0.4653 32 1 7.7387 -4.0530 2.0233 33 1 9.1918 -3.4632 1.1817 34 1 5.6980 -4.5083 -1.0568 35 1 5.6979 -4.6632 0.7165 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261152798.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:57 Heat of formation + Delta-G solvation = -253.015206 kcal Electronic energy + Delta-G solvation = -21642.024802 eV Core-core repulsion = 17751.313852 eV Total energy + Delta-G solvation = -3890.710950 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.41083 -49.28174 -48.81013 -48.58898 -39.47164 -35.80372 -34.09777 -32.40836 -31.07053 -27.04906 -26.89330 -23.42325 -23.41240 -21.63225 -20.87903 -19.51721 -19.47166 -19.26547 -18.73673 -16.93093 -16.78222 -16.34574 -15.78772 -15.62384 -15.56300 -15.45996 -15.25100 -15.20046 -14.93932 -14.92080 -14.77629 -14.34457 -14.06834 -13.60827 -13.53782 -13.36605 -12.90962 -12.67562 -12.56110 -12.16583 -11.95872 -11.79018 -11.64601 -11.52968 -11.28751 -11.00412 -10.91540 -10.72273 -8.27682 -6.31165 1.32046 1.37328 1.38333 1.50473 2.37654 2.38402 2.63667 2.72953 3.08272 3.19944 3.39373 3.53479 3.92994 3.98789 4.10856 4.18264 4.36505 4.47775 4.65071 4.68681 4.78179 4.84926 4.93372 4.98756 5.13743 5.15908 5.22282 5.37523 5.45009 5.60912 5.68448 5.72026 6.31507 6.77719 7.33491 8.89420 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.035581 B = 0.004639 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.746260 B = 6034.271725 C = 6334.558184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.002 3.998 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.240 1.240 7 C -0.532 4.532 8 H 0.030 0.970 9 C -0.011 4.011 10 C -0.090 4.090 11 C -0.078 4.078 12 H 0.067 0.933 13 C -0.123 4.123 14 C -0.111 4.111 15 C -0.139 4.139 16 C 0.089 3.911 17 F -0.184 7.184 18 C 0.438 3.562 19 F -0.182 7.182 20 F -0.176 7.176 21 F -0.166 7.166 22 C -0.137 4.137 23 H 0.265 0.735 24 H 0.029 0.971 25 H 0.012 0.988 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.516 -8.555 3.159 23.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.194 4.194 3 Si 0.773 3.227 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.164 1.164 7 C -0.570 4.570 8 H 0.048 0.952 9 C -0.048 4.048 10 C -0.128 4.128 11 C -0.096 4.096 12 H 0.086 0.914 13 C -0.160 4.160 14 C -0.148 4.148 15 C -0.176 4.176 16 C 0.069 3.931 17 F -0.165 7.165 18 C 0.383 3.617 19 F -0.163 7.163 20 F -0.157 7.157 21 F -0.148 7.148 22 C -0.174 4.174 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.030 0.970 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.129 0.871 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 21.405 -8.474 3.128 23.233 hybrid contribution -0.372 0.359 -0.533 0.743 sum 21.033 -8.115 2.594 22.693 Atomic orbital electron populations 1.70081 1.08409 1.28079 1.53005 1.26044 0.95575 1.03594 0.94222 0.85666 0.79760 0.78201 0.79093 1.19558 1.21114 1.16358 1.21583 0.92532 0.92937 1.49974 0.95212 1.19570 0.93379 0.95313 0.96567 1.21353 0.93435 0.97190 1.00818 1.21068 0.95057 0.94214 0.99304 0.91442 1.21732 0.95610 1.01749 0.96899 1.21481 0.94854 0.94596 1.03850 1.22276 1.03073 0.98849 0.93439 1.22239 0.97629 0.84752 0.88446 1.92934 1.90053 1.76429 1.57067 1.21057 0.75977 0.90527 0.74147 1.93204 1.88380 1.87383 1.47338 1.93201 1.29437 1.96957 1.96144 1.93211 1.88356 1.78198 1.55013 1.22278 0.89506 1.00007 1.05639 0.92610 0.95273 0.96997 0.93681 0.92598 0.90569 0.91789 0.88490 0.91683 0.87091 0.88287 0.89941 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 2 C 0.00 0.11 5.47 84.66 0.46 0.57 16 3 Si 0.95 44.01 27.47 68.60 1.88 45.90 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.24 -10.09 6.54 99.48 0.65 -9.44 16 7 C -0.53 -30.63 9.66 25.60 0.25 -30.39 16 8 H 0.03 1.89 7.99 -2.91 -0.02 1.86 16 9 C -0.01 -0.50 3.80 29.85 0.11 -0.39 16 10 C -0.09 -3.31 4.62 30.59 0.14 -3.17 16 11 C -0.08 -2.17 2.07 -10.79 -0.02 -2.19 16 12 H 0.07 2.00 7.80 -2.39 -0.02 1.98 16 13 C -0.12 -2.92 4.96 30.60 0.15 -2.77 16 14 C -0.11 -1.99 5.80 30.59 0.18 -1.81 16 15 C -0.14 -2.25 4.75 30.59 0.15 -2.11 16 16 C 0.09 1.86 0.69 -10.78 -0.01 1.85 16 17 F -0.18 -4.57 15.73 44.97 0.71 -3.86 16 18 C 0.44 9.11 2.44 71.98 0.18 9.28 16 19 F -0.18 -4.29 16.78 44.97 0.75 -3.54 16 20 F -0.18 -3.66 16.78 44.97 0.75 -2.91 16 21 F -0.17 -3.24 16.28 44.97 0.73 -2.51 16 22 C -0.14 -3.15 4.04 30.61 0.12 -3.03 16 23 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 24 H 0.03 1.27 5.62 -2.39 -0.01 1.25 16 25 H 0.01 0.53 7.57 -2.38 -0.02 0.51 16 26 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 1.74 6.56 -2.39 -0.02 1.72 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.27 7.80 -2.39 -0.02 1.26 16 32 H 0.11 1.46 7.80 -2.39 -0.02 1.45 16 33 H 0.10 1.36 7.80 -2.38 -0.02 1.34 16 34 H 0.08 1.98 7.80 -2.39 -0.02 1.96 16 35 H 0.11 2.19 7.81 -2.39 -0.02 2.17 16 Total: -1.00 -65.12 291.48 7.88 -57.24 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: 1.03 Total: 3.84 kcal Atomic # 6 Polarization: -35.85 SS G_CDS: 1.71 Total: -34.14 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: 0.30 Total: -60.03 kcal Atomic # 9 Polarization: -15.76 SS G_CDS: 2.95 Total: -12.81 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.90 kcal Total: -65.12 7.88 -57.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152798.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.776 kcal (2) G-P(sol) polarization free energy of solvation -65.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -253.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds