Wall clock time and date at job start Mon Mar 30 2020 06:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00019 * 2 1 4 4 H 1.48497 * 109.47204 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47665 * 300.00266 * 3 2 1 6 6 H 1.48504 * 109.47129 * 60.00246 * 3 2 1 7 7 C 1.37870 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00074 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00157 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47550 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47278 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46866 * 304.99490 * 11 10 9 13 13 C 1.52999 * 109.46997 * 64.99702 * 11 10 9 14 14 C 1.52997 * 109.47317 * 60.00177 * 13 11 10 15 15 C 1.53000 * 109.47060 * 59.99960 * 14 13 11 16 16 C 1.53002 * 109.47233 * 299.99657 * 15 14 13 17 17 F 1.39905 * 109.47058 * 300.00814 * 16 15 14 18 18 C 1.52997 * 109.47415 * 180.02562 * 16 15 14 19 19 F 1.39898 * 109.47062 * 60.00257 * 18 16 15 20 20 F 1.39900 * 109.47435 * 180.02562 * 18 16 15 21 21 F 1.39905 * 109.46849 * 300.00430 * 18 16 15 22 22 C 1.52997 * 109.46817 * 60.00194 * 16 15 14 23 23 H 0.97006 * 120.00188 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47547 * 59.99573 * 9 7 2 25 25 H 1.09009 * 109.46895 * 299.99913 * 9 7 2 26 26 H 1.08995 * 109.47609 * 59.99523 * 10 9 7 27 27 H 1.09005 * 109.46881 * 299.99227 * 10 9 7 28 28 H 1.08996 * 109.46929 * 299.99280 * 13 11 10 29 29 H 1.09002 * 109.46716 * 180.02562 * 13 11 10 30 30 H 1.09002 * 109.47153 * 299.99641 * 14 13 11 31 31 H 1.09001 * 109.46832 * 179.97438 * 14 13 11 32 32 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 33 33 H 1.09004 * 109.46724 * 180.02562 * 15 14 13 34 34 H 1.09002 * 109.47153 * 60.00231 * 22 16 15 35 35 H 1.09001 * 109.47289 * 180.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0015 11 6 1.4802 -4.9871 -0.0020 12 1 0.7877 -5.0071 0.8396 13 6 0.6977 -5.1236 -1.3097 14 6 1.6697 -5.0955 -2.4909 15 6 2.6591 -6.2558 -2.3650 16 6 3.4416 -6.1191 -1.0574 17 9 4.1411 -4.9075 -1.0569 18 6 4.4315 -7.2790 -0.9317 19 9 5.3201 -7.2527 -2.0119 20 9 5.1466 -7.1544 0.2642 21 9 3.7323 -8.4908 -0.9325 22 6 2.4697 -6.1473 0.1239 23 1 -0.4851 0.8401 -0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6240 -2.5574 0.8881 26 1 2.8712 -3.6047 0.8889 27 1 2.8725 -3.6039 -0.8910 28 1 -0.0072 -4.2972 -1.3993 29 1 0.1524 -6.0674 -1.3098 30 1 2.2147 -4.1515 -2.4906 31 1 1.1122 -5.1933 -3.4225 32 1 2.1141 -7.1996 -2.3653 33 1 3.3518 -6.2354 -3.2064 34 1 1.9247 -7.0913 0.1235 35 1 3.0271 -6.0495 1.0555 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261152799.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:01 Heat of formation + Delta-G solvation = -228.366574 kcal Electronic energy + Delta-G solvation = -22114.314223 eV Core-core repulsion = 18224.672118 eV Total energy + Delta-G solvation = -3889.642105 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.39130 -48.24117 -47.76511 -47.56850 -38.34561 -33.78625 -32.10272 -31.23933 -29.04647 -25.97660 -24.94065 -22.55936 -22.07730 -20.77837 -19.04452 -18.44441 -18.36411 -18.03373 -16.21806 -16.08332 -15.40692 -14.78783 -14.55347 -14.43032 -14.39822 -14.19531 -14.17196 -13.92160 -13.90660 -13.60434 -13.23123 -12.72506 -12.62936 -12.10718 -12.00202 -11.76319 -11.45259 -11.30662 -10.93881 -10.85629 -10.53913 -10.31099 -10.07342 -9.88116 -9.36715 -9.06459 -8.93690 -8.28447 -5.95880 -3.96790 2.36900 3.33456 3.41063 3.41149 3.46179 3.68944 3.77613 4.28142 4.44906 4.50094 4.59998 5.12275 5.15431 5.29605 5.34101 5.40390 5.43101 5.56298 5.75797 5.86883 5.94312 6.16221 6.28440 6.35129 6.55417 6.64520 6.79824 7.02737 7.29275 7.75838 7.90643 8.06337 8.50848 9.11265 9.67132 11.15500 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.031183 B = 0.005241 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.709856 B = 5341.545913 C = 5671.536954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.127 4.127 11 C -0.084 4.084 12 H 0.078 0.922 13 C -0.117 4.117 14 C -0.119 4.119 15 C -0.140 4.140 16 C 0.092 3.908 17 F -0.160 7.160 18 C 0.432 3.568 19 F -0.177 7.177 20 F -0.174 7.174 21 F -0.175 7.175 22 C -0.137 4.137 23 H 0.258 0.742 24 H 0.018 0.982 25 H 0.010 0.990 26 H 0.045 0.955 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.809 -16.577 -3.611 17.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.165 4.165 11 C -0.103 4.103 12 H 0.096 0.904 13 C -0.154 4.154 14 C -0.157 4.157 15 C -0.177 4.177 16 C 0.073 3.927 17 F -0.140 7.140 18 C 0.377 3.623 19 F -0.158 7.158 20 F -0.156 7.156 21 F -0.156 7.156 22 C -0.175 4.175 23 H 0.068 0.932 24 H 0.037 0.963 25 H 0.029 0.971 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.714 -16.457 -3.606 17.495 hybrid contribution 0.779 0.799 0.124 1.123 sum 5.494 -15.658 -3.483 16.956 Atomic orbital electron populations 1.69971 1.06003 1.26310 1.51471 1.25007 0.94806 0.99137 0.95536 0.86599 0.80250 0.84042 0.77510 1.19748 1.21084 1.21099 1.21337 0.93108 0.91186 1.49723 0.92744 1.19141 0.93991 0.91430 0.96947 1.22193 0.99244 0.92934 1.02088 1.21204 0.96197 0.94623 0.98247 0.90369 1.21629 0.98017 1.01982 0.93820 1.21548 0.96907 0.98164 0.99047 1.22197 0.99360 1.02278 0.93884 1.22079 0.89425 0.78829 1.02412 1.92951 1.79903 1.43375 1.97777 1.21251 0.81917 0.84922 0.74186 1.93197 1.70506 1.96599 1.55504 1.93210 1.79800 1.95906 1.46657 1.93177 1.78678 1.47519 1.96224 1.22291 0.97440 1.02116 0.95647 0.93201 0.96340 0.97127 0.93592 0.90451 0.89900 0.92722 0.89615 0.91049 0.89240 0.89893 0.89540 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.55 4.73 -27.89 -0.13 0.42 16 10 C -0.13 -2.57 3.45 -26.73 -0.09 -2.66 16 11 C -0.08 -1.32 2.66 -90.61 -0.24 -1.56 16 12 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 13 C -0.12 -1.68 5.21 -26.73 -0.14 -1.82 16 14 C -0.12 -1.60 5.59 -26.73 -0.15 -1.75 16 15 C -0.14 -1.63 4.76 -26.73 -0.13 -1.75 16 16 C 0.09 1.24 0.68 -90.62 -0.06 1.17 16 17 F -0.16 -2.62 12.84 2.25 0.03 -2.59 16 18 C 0.43 5.48 2.44 37.16 0.09 5.57 16 19 F -0.18 -2.31 16.78 2.25 0.04 -2.27 16 20 F -0.17 -2.38 16.78 2.25 0.04 -2.34 16 21 F -0.17 -2.02 16.28 2.25 0.04 -1.98 16 22 C -0.14 -1.80 4.40 -26.73 -0.12 -1.91 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 24 H 0.02 0.48 6.57 -51.93 -0.34 0.14 16 25 H 0.01 0.28 8.14 -51.92 -0.42 -0.14 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.08 1.57 3.73 -51.93 -0.19 1.38 16 28 H 0.08 1.37 6.57 -51.93 -0.34 1.03 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.37 6.13 -51.93 -0.32 1.05 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.09 0.87 7.80 -51.93 -0.41 0.46 16 33 H 0.08 0.90 7.80 -51.93 -0.41 0.50 16 34 H 0.09 0.93 7.80 -51.93 -0.41 0.53 16 35 H 0.08 1.11 7.80 -51.93 -0.41 0.71 16 LS Contribution 286.27 15.07 4.31 4.31 Total: -1.00 -29.85 286.27 -5.68 -35.53 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -4.47 Total: -3.56 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -1.38 Total: -17.75 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.74 Total: -26.23 kcal Atomic # 9 Polarization: -9.32 SS G_CDS: 0.14 Total: -9.18 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.85 -5.68 -35.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152799.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.835 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds