Wall clock time and date at job start Mon Mar 30 2020 06:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47704 * 54.99481 * 11 10 9 13 13 C 1.53008 * 109.46847 * 294.99397 * 11 10 9 14 14 C 1.53001 * 109.47079 * 300.00490 * 13 11 10 15 15 C 1.52997 * 109.46902 * 299.99525 * 14 13 11 16 16 C 1.53004 * 109.47024 * 60.00665 * 15 14 13 17 17 F 1.39898 * 109.47197 * 59.99741 * 16 15 14 18 18 C 1.52997 * 109.47024 * 180.02562 * 16 15 14 19 19 F 1.39903 * 109.47737 * 59.99436 * 18 16 15 20 20 F 1.39897 * 109.47086 * 179.97438 * 18 16 15 21 21 F 1.39905 * 109.46848 * 299.99702 * 18 16 15 22 22 C 1.53000 * 109.47194 * 175.00077 * 11 10 9 23 23 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 25 25 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 26 26 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 27 27 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 28 28 H 1.09003 * 109.46480 * 60.00398 * 13 11 10 29 29 H 1.09004 * 109.46932 * 179.97438 * 13 11 10 30 30 H 1.08996 * 109.47303 * 60.00309 * 14 13 11 31 31 H 1.09002 * 109.46786 * 179.97438 * 14 13 11 32 32 H 1.09004 * 109.47325 * 180.02562 * 15 14 13 33 33 H 1.09000 * 109.47400 * 300.00210 * 15 14 13 34 34 H 1.09000 * 109.47237 * 179.97438 * 22 11 10 35 35 H 1.09002 * 109.46818 * 299.99696 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 1 0.7885 -5.0068 -0.8431 13 6 0.6971 -5.1243 1.3060 14 6 1.6684 -5.0966 2.4879 15 6 2.6578 -6.2568 2.3621 16 6 3.4412 -6.1195 1.0550 17 9 4.1407 -4.9079 1.0555 18 6 4.4302 -7.2800 0.9289 19 9 3.7303 -8.4914 0.9282 20 9 5.1461 -7.1548 -0.2665 21 9 5.3183 -7.2552 2.0096 22 6 2.4699 -6.1472 -0.1269 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6043 -0.8905 27 1 2.8720 -3.6043 0.8894 28 1 -0.0079 -4.2978 1.3955 29 1 0.1517 -6.0681 1.3054 30 1 2.2133 -4.1526 2.4883 31 1 1.1103 -5.1939 3.4191 32 1 3.3496 -6.2373 3.2043 33 1 2.1129 -7.2007 2.3617 34 1 1.9250 -7.0912 -0.1269 35 1 3.0280 -6.0494 -1.0581 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261152800.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:04 Heat of formation + Delta-G solvation = -228.359420 kcal Electronic energy + Delta-G solvation = -22114.357139 eV Core-core repulsion = 18224.715345 eV Total energy + Delta-G solvation = -3889.641795 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.39128 -48.24188 -47.76489 -47.56912 -38.34573 -33.78561 -32.10186 -31.23978 -29.04584 -25.97566 -24.94046 -22.55945 -22.07742 -20.77879 -19.04468 -18.44441 -18.36430 -18.03384 -16.21838 -16.08394 -15.40686 -14.78786 -14.55336 -14.43021 -14.39812 -14.19537 -14.17213 -13.92168 -13.90662 -13.60469 -13.23110 -12.72451 -12.62974 -12.10676 -12.00223 -11.76286 -11.45252 -11.30630 -10.93851 -10.85620 -10.53897 -10.31127 -10.07321 -9.88130 -9.36672 -9.06492 -8.93693 -8.28414 -5.95873 -3.96778 2.36888 3.33461 3.41050 3.41139 3.46171 3.68958 3.77602 4.28125 4.44885 4.50094 4.59989 5.12296 5.15434 5.29590 5.34137 5.40367 5.43119 5.56313 5.75795 5.86874 5.94320 6.16227 6.28482 6.35173 6.55394 6.64546 6.79799 7.02786 7.29257 7.75869 7.90659 8.06353 8.50837 9.11286 9.67115 11.15507 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.031188 B = 0.005240 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.557108 B = 5341.772934 C = 5671.622397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.127 4.127 11 C -0.084 4.084 12 H 0.078 0.922 13 C -0.117 4.117 14 C -0.119 4.119 15 C -0.139 4.139 16 C 0.093 3.907 17 F -0.160 7.160 18 C 0.432 3.568 19 F -0.174 7.174 20 F -0.174 7.174 21 F -0.177 7.177 22 C -0.137 4.137 23 H 0.258 0.742 24 H 0.010 0.990 25 H 0.018 0.982 26 H 0.045 0.955 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.808 -16.578 3.604 17.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.165 4.165 11 C -0.103 4.103 12 H 0.096 0.904 13 C -0.155 4.155 14 C -0.157 4.157 15 C -0.177 4.177 16 C 0.073 3.927 17 F -0.140 7.140 18 C 0.377 3.623 19 F -0.156 7.156 20 F -0.156 7.156 21 F -0.158 7.158 22 C -0.175 4.175 23 H 0.068 0.932 24 H 0.029 0.971 25 H 0.037 0.963 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.713 -16.458 3.599 17.494 hybrid contribution 0.779 0.799 -0.124 1.122 sum 5.492 -15.660 3.475 16.955 Atomic orbital electron populations 1.69970 1.06001 1.26313 1.51472 1.25011 0.94806 0.99137 0.95535 0.86598 0.80250 0.84042 0.77511 1.19746 1.21103 1.21078 1.21339 0.93108 0.91185 1.49723 0.92742 1.19143 0.93991 0.91431 0.96948 1.22191 0.99242 0.92934 1.02090 1.21202 0.96193 0.94622 0.98251 0.90369 1.21633 0.98017 1.01981 0.93819 1.21546 0.96911 0.98166 0.99046 1.22195 0.99354 1.02274 0.93895 1.22075 0.89425 0.78831 1.02408 1.92949 1.79902 1.43369 1.97776 1.21252 0.81904 0.84934 0.74187 1.93176 1.78643 1.47550 1.96225 1.93209 1.79764 1.95901 1.46698 1.93199 1.70543 1.96607 1.55463 1.22293 0.97451 1.02118 0.95639 0.93200 0.97120 0.96344 0.93596 0.90448 0.89900 0.92720 0.89619 0.91049 0.89892 0.89245 0.89540 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.55 4.73 -27.88 -0.13 0.42 16 10 C -0.13 -2.57 3.45 -26.73 -0.09 -2.66 16 11 C -0.08 -1.32 2.66 -90.62 -0.24 -1.56 16 12 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 13 C -0.12 -1.68 5.21 -26.73 -0.14 -1.82 16 14 C -0.12 -1.60 5.59 -26.73 -0.15 -1.75 16 15 C -0.14 -1.63 4.75 -26.73 -0.13 -1.75 16 16 C 0.09 1.24 0.68 -90.62 -0.06 1.17 16 17 F -0.16 -2.62 12.84 2.25 0.03 -2.59 16 18 C 0.43 5.48 2.44 37.16 0.09 5.57 16 19 F -0.17 -2.02 16.28 2.25 0.04 -1.98 16 20 F -0.17 -2.38 16.78 2.25 0.04 -2.34 16 21 F -0.18 -2.31 16.78 2.25 0.04 -2.27 16 22 C -0.14 -1.80 4.40 -26.73 -0.12 -1.91 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 24 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.02 0.48 6.57 -51.93 -0.34 0.14 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.08 1.57 3.73 -51.93 -0.19 1.38 16 28 H 0.08 1.37 6.57 -51.93 -0.34 1.03 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.37 6.13 -51.93 -0.32 1.05 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.90 7.80 -51.93 -0.41 0.50 16 33 H 0.09 0.87 7.80 -51.93 -0.41 0.46 16 34 H 0.09 0.93 7.80 -51.93 -0.41 0.53 16 35 H 0.08 1.11 7.80 -51.93 -0.41 0.71 16 LS Contribution 286.26 15.07 4.31 4.31 Total: -1.00 -29.85 286.26 -5.68 -35.53 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -4.47 Total: -3.56 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -1.38 Total: -17.76 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.74 Total: -26.23 kcal Atomic # 9 Polarization: -9.32 SS G_CDS: 0.14 Total: -9.18 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.85 -5.68 -35.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152800.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.829 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds