Wall clock time and date at job start Mon Mar 30 2020 06:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48500 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46942 * 300.00690 * 3 2 1 6 6 H 1.48504 * 109.46979 * 60.00603 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47704 * 54.99481 * 11 10 9 13 13 C 1.53008 * 109.46847 * 294.99397 * 11 10 9 14 14 C 1.53001 * 109.47079 * 300.00490 * 13 11 10 15 15 C 1.52997 * 109.46902 * 299.99525 * 14 13 11 16 16 C 1.53004 * 109.47024 * 60.00665 * 15 14 13 17 17 F 1.39898 * 109.47197 * 59.99741 * 16 15 14 18 18 C 1.52997 * 109.47024 * 180.02562 * 16 15 14 19 19 F 1.39903 * 109.47737 * 59.99436 * 18 16 15 20 20 F 1.39897 * 109.47086 * 179.97438 * 18 16 15 21 21 F 1.39905 * 109.46848 * 299.99702 * 18 16 15 22 22 C 1.53000 * 109.47194 * 175.00077 * 11 10 9 23 23 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 25 25 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 26 26 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 27 27 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 28 28 H 1.09003 * 109.46480 * 60.00398 * 13 11 10 29 29 H 1.09004 * 109.46932 * 179.97438 * 13 11 10 30 30 H 1.08996 * 109.47303 * 60.00309 * 14 13 11 31 31 H 1.09002 * 109.46786 * 179.97438 * 14 13 11 32 32 H 1.09004 * 109.47325 * 180.02562 * 15 14 13 33 33 H 1.09000 * 109.47400 * 300.00210 * 15 14 13 34 34 H 1.09000 * 109.47237 * 179.97438 * 22 11 10 35 35 H 1.09002 * 109.46818 * 299.99696 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 1 0.7885 -5.0068 -0.8431 13 6 0.6971 -5.1243 1.3060 14 6 1.6684 -5.0966 2.4879 15 6 2.6578 -6.2568 2.3621 16 6 3.4412 -6.1195 1.0550 17 9 4.1407 -4.9079 1.0555 18 6 4.4302 -7.2800 0.9289 19 9 3.7303 -8.4914 0.9282 20 9 5.1461 -7.1548 -0.2665 21 9 5.3183 -7.2552 2.0096 22 6 2.4699 -6.1472 -0.1269 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6043 -0.8905 27 1 2.8720 -3.6043 0.8894 28 1 -0.0079 -4.2978 1.3955 29 1 0.1517 -6.0681 1.3054 30 1 2.2133 -4.1526 2.4883 31 1 1.1103 -5.1939 3.4191 32 1 3.3496 -6.2373 3.2043 33 1 2.1129 -7.2007 2.3617 34 1 1.9250 -7.0912 -0.1269 35 1 3.0280 -6.0494 -1.0581 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261152800.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:04 Heat of formation + Delta-G solvation = -243.905757 kcal Electronic energy + Delta-G solvation = -22115.031279 eV Core-core repulsion = 18224.715345 eV Total energy + Delta-G solvation = -3890.315934 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -51.39001 -49.33508 -48.78357 -48.59225 -39.55805 -35.62188 -33.80832 -32.31316 -30.74224 -27.00717 -26.83169 -23.70267 -23.55137 -22.22684 -20.19784 -19.45896 -19.41071 -19.17721 -18.37313 -17.25540 -16.61934 -16.39337 -15.92988 -15.56891 -15.52176 -15.34292 -15.18622 -14.91315 -14.91142 -14.87457 -14.50359 -14.37809 -13.98229 -13.46661 -13.24633 -13.17919 -13.07800 -12.84801 -12.62421 -12.38566 -12.11399 -11.68173 -11.51495 -11.35419 -11.00883 -10.86265 -10.73698 -10.47435 -8.18304 -6.27598 1.35330 1.37893 1.38492 1.51735 2.40733 2.41559 2.69060 2.77806 3.14519 3.26369 3.43357 3.60031 4.01798 4.08561 4.15715 4.22051 4.35289 4.55116 4.73141 4.76920 4.85071 4.90801 5.00683 5.05391 5.22380 5.30601 5.35496 5.43182 5.55361 5.64274 5.89191 5.96687 6.33123 6.90336 7.40957 8.93280 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.031188 B = 0.005240 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.557108 B = 5341.772934 C = 5671.622397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.050 0.950 9 C 0.028 3.972 10 C -0.116 4.116 11 C -0.082 4.082 12 H 0.076 0.924 13 C -0.115 4.115 14 C -0.118 4.118 15 C -0.134 4.134 16 C 0.083 3.917 17 F -0.183 7.183 18 C 0.440 3.560 19 F -0.163 7.163 20 F -0.181 7.181 21 F -0.179 7.179 22 C -0.132 4.132 23 H 0.263 0.737 24 H -0.017 1.017 25 H 0.003 0.997 26 H 0.032 0.968 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.268 -17.976 4.174 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.782 3.218 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.578 4.578 8 H 0.068 0.932 9 C -0.009 4.009 10 C -0.153 4.153 11 C -0.100 4.100 12 H 0.094 0.906 13 C -0.152 4.152 14 C -0.155 4.155 15 C -0.171 4.171 16 C 0.063 3.937 17 F -0.163 7.163 18 C 0.385 3.615 19 F -0.144 7.144 20 F -0.163 7.163 21 F -0.160 7.160 22 C -0.169 4.169 23 H 0.071 0.929 24 H 0.001 0.999 25 H 0.021 0.979 26 H 0.051 0.949 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.180 -17.866 4.169 19.063 hybrid contribution 0.608 1.227 -0.308 1.404 sum 5.788 -16.638 3.861 18.035 Atomic orbital electron populations 1.70086 1.07538 1.27498 1.52110 1.25892 0.95738 1.02974 0.94969 0.85515 0.79013 0.79338 0.77907 1.19107 1.20314 1.20147 1.21763 0.93229 0.92941 1.49886 0.93150 1.19030 0.94325 0.92766 0.94734 1.22014 0.98108 0.93755 1.01396 1.21093 0.96498 0.93192 0.99223 0.90606 1.21611 0.97702 1.02579 0.93351 1.21492 0.97007 0.97434 0.99591 1.22227 0.99035 1.02666 0.93173 1.22353 0.89670 0.78171 1.03520 1.92897 1.80456 1.45024 1.97902 1.21018 0.81610 0.84959 0.73876 1.93202 1.78310 1.46754 1.96153 1.93201 1.79957 1.95968 1.47148 1.93199 1.70630 1.96635 1.55523 1.22255 0.96884 1.02197 0.95555 0.92859 0.99867 0.97879 0.94890 0.90493 0.93001 0.89083 0.93104 0.88974 0.88931 0.86140 0.86073 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.96 45.36 29.54 68.60 2.03 47.39 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.54 -31.64 9.11 25.60 0.23 -31.41 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.03 1.50 4.73 29.85 0.14 1.64 16 10 C -0.12 -4.78 3.45 30.59 0.11 -4.68 16 11 C -0.08 -2.51 2.66 -10.79 -0.03 -2.54 16 12 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 13 C -0.12 -3.16 5.21 30.60 0.16 -3.00 16 14 C -0.12 -2.99 5.59 30.59 0.17 -2.81 16 15 C -0.13 -2.72 4.75 30.59 0.15 -2.57 16 16 C 0.08 2.04 0.68 -10.79 -0.01 2.03 16 17 F -0.18 -5.91 12.84 44.97 0.58 -5.33 16 18 C 0.44 10.07 2.44 71.98 0.18 10.25 16 19 F -0.16 -3.17 16.28 44.97 0.73 -2.44 16 20 F -0.18 -4.62 16.78 44.97 0.75 -3.87 16 21 F -0.18 -4.27 16.78 44.97 0.75 -3.51 16 22 C -0.13 -3.14 4.40 30.59 0.13 -3.01 16 23 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 24 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 25 H 0.00 0.16 6.57 -2.39 -0.02 0.15 16 26 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.08 3.22 3.73 -2.39 -0.01 3.21 16 28 H 0.05 1.74 6.57 -2.39 -0.02 1.73 16 29 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.05 1.64 6.13 -2.39 -0.01 1.63 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.09 1.74 7.80 -2.38 -0.02 1.73 16 33 H 0.12 1.75 7.80 -2.39 -0.02 1.73 16 34 H 0.12 2.10 7.80 -2.39 -0.02 2.08 16 35 H 0.08 2.03 7.80 -2.39 -0.02 2.01 16 Total: -1.00 -65.69 286.26 7.92 -57.77 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: 1.10 Total: 2.39 kcal Atomic # 6 Polarization: -37.23 SS G_CDS: 1.69 Total: -35.54 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.28 Total: -56.86 kcal Atomic # 9 Polarization: -17.96 SS G_CDS: 2.82 Total: -15.14 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -65.69 7.92 -57.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261152800.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.137 kcal (2) G-P(sol) polarization free energy of solvation -65.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds