Wall clock time and date at job start Mon Mar 30 2020 06:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99783 * 2 1 4 4 H 1.48504 * 109.47058 * 269.99595 * 3 2 1 5 5 H 1.48493 * 109.47278 * 30.00063 * 3 2 1 6 6 H 1.48503 * 109.47153 * 150.00065 * 3 2 1 7 7 C 1.37877 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00070 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99881 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47035 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46923 * 175.00119 * 10 9 7 12 12 C 1.52995 * 109.46937 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47682 * 300.00183 * 12 11 10 14 14 C 1.52995 * 109.47682 * 179.97438 * 13 12 11 15 15 H 1.08997 * 109.47447 * 185.91447 * 14 13 12 16 16 F 1.39899 * 109.47015 * 305.91441 * 14 13 12 17 17 C 1.52999 * 109.47050 * 65.90934 * 14 13 12 18 18 F 1.39899 * 109.47116 * 54.09104 * 17 14 13 19 19 F 1.39903 * 109.47141 * 174.08736 * 17 14 13 20 20 F 1.39903 * 109.47669 * 294.09341 * 17 14 13 21 21 C 1.53001 * 109.46755 * 59.99721 * 13 12 11 22 22 C 1.52998 * 109.46946 * 294.99930 * 10 9 7 23 23 H 0.97001 * 120.00393 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47088 * 59.99899 * 9 7 2 25 25 H 1.09000 * 109.47088 * 299.99954 * 9 7 2 26 26 H 1.08998 * 109.47320 * 55.00402 * 10 9 7 27 27 H 1.08998 * 109.46892 * 60.00021 * 11 10 9 28 28 H 1.08992 * 109.47453 * 299.99962 * 11 10 9 29 29 H 1.08999 * 109.47140 * 180.02562 * 12 11 10 30 30 H 1.08998 * 109.47469 * 60.00117 * 12 11 10 31 31 H 1.09003 * 109.46426 * 300.00009 * 13 12 11 32 32 H 1.08998 * 109.46957 * 60.00946 * 21 13 12 33 33 H 1.09005 * 109.47013 * 180.02562 * 21 13 12 34 34 H 1.08998 * 109.47497 * 300.00364 * 22 10 9 35 35 H 1.08999 * 109.47024 * 60.00163 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4845 -4.9834 0.1296 12 6 2.4787 -6.1463 0.1300 13 6 3.2731 -6.1387 -1.1776 14 6 4.2678 -7.3012 -1.1769 15 1 4.9049 -7.2349 -2.0588 16 9 5.0585 -7.2377 -0.0246 17 6 3.5034 -8.6264 -1.1984 18 9 2.6129 -8.6337 -2.2773 19 9 4.4084 -9.6847 -1.3337 20 9 2.7899 -8.7728 -0.0039 21 6 4.0339 -4.8173 -1.3044 22 6 3.0401 -3.6546 -1.3046 23 1 -0.4851 0.8400 0.0004 24 1 0.6240 -2.5575 -0.8880 25 1 0.6247 -2.5563 0.8920 26 1 2.9294 -3.5545 0.8445 27 1 0.8004 -5.0910 -0.7121 28 1 0.9183 -4.9887 1.0609 29 1 1.9367 -7.0877 0.2199 30 1 3.1632 -6.0389 0.9715 31 1 2.5886 -6.2462 -2.0191 32 1 4.7183 -4.7100 -0.4629 33 1 4.5995 -4.8117 -2.2362 34 1 2.3560 -3.7622 -2.1464 35 1 3.5821 -2.7133 -1.3950 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261156752.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:49 Heat of formation + Delta-G solvation = -239.844303 kcal Electronic energy + Delta-G solvation = -21511.611604 eV Core-core repulsion = 17621.471787 eV Total energy + Delta-G solvation = -3890.139817 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.52961 -48.36361 -47.93200 -47.65430 -38.42018 -33.98727 -32.16832 -30.42696 -29.45531 -26.44933 -24.00070 -22.34868 -22.26168 -20.29714 -19.25486 -18.89673 -18.64732 -18.13802 -16.38277 -16.08571 -15.74035 -14.92746 -14.70917 -14.57907 -14.44579 -14.35878 -14.21477 -14.01221 -13.83706 -13.70042 -13.24272 -12.83486 -12.58704 -11.96130 -11.65873 -11.63285 -11.47454 -11.10637 -10.90038 -10.74391 -10.60717 -10.40529 -10.20296 -9.81488 -9.52989 -9.04642 -8.85306 -8.33043 -5.97901 -3.99442 2.24758 3.29740 3.31988 3.38813 3.41692 3.56004 3.66104 4.17533 4.41390 4.47193 4.57188 4.99158 5.11204 5.37635 5.41750 5.63683 5.70257 5.83382 5.88185 5.96302 5.99927 6.30718 6.35631 6.51007 6.61301 6.70789 7.04847 7.07708 7.19410 7.70432 7.85586 8.02671 8.45810 9.07327 9.64233 11.13443 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.043942 B = 0.004198 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.045770 B = 6667.703245 C = 6901.762320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.026 3.974 10 C -0.082 4.082 11 C -0.111 4.111 12 C -0.131 4.131 13 C -0.116 4.116 14 C 0.061 3.939 15 H 0.126 0.874 16 F -0.176 7.176 17 C 0.430 3.570 18 F -0.171 7.171 19 F -0.180 7.180 20 F -0.167 7.167 21 C -0.112 4.112 22 C -0.101 4.101 23 H 0.259 0.741 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.850 -16.852 -3.904 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.101 4.101 11 C -0.148 4.148 12 C -0.169 4.169 13 C -0.134 4.134 14 C 0.024 3.976 15 H 0.144 0.856 16 F -0.156 7.156 17 C 0.376 3.624 18 F -0.153 7.153 19 F -0.162 7.162 20 F -0.149 7.149 21 C -0.149 4.149 22 C -0.139 4.139 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.701 -16.765 -3.866 18.850 hybrid contribution 0.358 0.667 0.040 0.758 sum 8.059 -16.099 -3.826 18.405 Atomic orbital electron populations 1.69961 1.06044 1.26473 1.51124 1.25016 0.94785 0.99138 0.95528 0.86658 0.79903 0.83791 0.78034 1.20753 1.21312 1.19921 1.21263 0.92947 0.91013 1.50083 0.92639 1.19134 0.93673 0.91153 0.97114 1.21229 0.97888 0.94616 0.96362 1.21599 0.97239 0.94370 1.01635 1.21936 0.98813 1.00361 0.95742 1.21942 0.96313 0.93260 1.01932 1.22942 0.93675 0.92169 0.88842 0.85619 1.92918 1.74835 1.96701 1.51173 1.21202 0.78972 0.87912 0.74360 1.93211 1.69650 1.96748 1.55666 1.93215 1.67042 1.60368 1.95541 1.93169 1.79135 1.96076 1.46470 1.21625 0.98447 0.93209 1.01639 1.21472 0.97109 0.96746 0.98560 0.93093 0.96646 0.96697 0.92489 0.92443 0.92089 0.91081 0.91204 0.88227 0.91410 0.92256 0.92599 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -14.13 8.41 -34.44 -0.29 -14.42 16 8 H 0.06 1.48 7.06 -52.48 -0.37 1.11 16 9 C 0.03 0.66 4.45 -27.88 -0.12 0.53 16 10 C -0.08 -1.61 2.14 -90.62 -0.19 -1.80 16 11 C -0.11 -1.84 5.20 -26.73 -0.14 -1.98 16 12 C -0.13 -1.81 4.51 -26.73 -0.12 -1.93 16 13 C -0.12 -1.40 1.95 -90.62 -0.18 -1.57 16 14 C 0.06 0.63 3.07 -26.73 -0.08 0.55 16 15 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 16 F -0.18 -2.14 15.96 2.25 0.04 -2.11 16 17 C 0.43 4.66 2.89 37.16 0.11 4.76 16 18 F -0.17 -1.85 16.46 2.25 0.04 -1.82 16 19 F -0.18 -1.97 17.32 2.25 0.04 -1.93 16 20 F -0.17 -2.03 14.14 2.25 0.03 -2.00 16 21 C -0.11 -1.48 5.12 -26.75 -0.14 -1.62 16 22 C -0.10 -1.75 5.01 -26.76 -0.13 -1.88 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 0.93 5.49 -51.93 -0.29 0.64 16 30 H 0.07 1.00 7.66 -51.93 -0.40 0.60 16 31 H 0.10 1.14 7.48 -51.93 -0.39 0.75 16 32 H 0.07 0.93 7.96 -51.93 -0.41 0.52 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 LS Contribution 292.27 15.07 4.40 4.40 Total: -1.00 -29.17 292.27 -5.86 -35.03 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -4.73 Total: -4.12 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -1.39 Total: -17.85 kcal Atomic # 7 Polarization: -26.76 SS G_CDS: 0.74 Total: -26.02 kcal Atomic # 9 Polarization: -8.00 SS G_CDS: 0.14 Total: -7.85 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.17 -5.86 -35.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261156752.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.818 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds