Wall clock time and date at job start Mon Mar 30 2020 06:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99783 * 2 1 4 4 H 1.48504 * 109.47058 * 269.99595 * 3 2 1 5 5 H 1.48493 * 109.47278 * 30.00063 * 3 2 1 6 6 H 1.48503 * 109.47153 * 150.00065 * 3 2 1 7 7 C 1.37877 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00070 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99881 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47035 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46923 * 175.00119 * 10 9 7 12 12 C 1.52995 * 109.46937 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47682 * 300.00183 * 12 11 10 14 14 C 1.52995 * 109.47682 * 179.97438 * 13 12 11 15 15 H 1.08997 * 109.47447 * 185.91447 * 14 13 12 16 16 F 1.39899 * 109.47015 * 305.91441 * 14 13 12 17 17 C 1.52999 * 109.47050 * 65.90934 * 14 13 12 18 18 F 1.39899 * 109.47116 * 54.09104 * 17 14 13 19 19 F 1.39903 * 109.47141 * 174.08736 * 17 14 13 20 20 F 1.39903 * 109.47669 * 294.09341 * 17 14 13 21 21 C 1.53001 * 109.46755 * 59.99721 * 13 12 11 22 22 C 1.52998 * 109.46946 * 294.99930 * 10 9 7 23 23 H 0.97001 * 120.00393 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47088 * 59.99899 * 9 7 2 25 25 H 1.09000 * 109.47088 * 299.99954 * 9 7 2 26 26 H 1.08998 * 109.47320 * 55.00402 * 10 9 7 27 27 H 1.08998 * 109.46892 * 60.00021 * 11 10 9 28 28 H 1.08992 * 109.47453 * 299.99962 * 11 10 9 29 29 H 1.08999 * 109.47140 * 180.02562 * 12 11 10 30 30 H 1.08998 * 109.47469 * 60.00117 * 12 11 10 31 31 H 1.09003 * 109.46426 * 300.00009 * 13 12 11 32 32 H 1.08998 * 109.46957 * 60.00946 * 21 13 12 33 33 H 1.09005 * 109.47013 * 180.02562 * 21 13 12 34 34 H 1.08998 * 109.47497 * 300.00364 * 22 10 9 35 35 H 1.08999 * 109.47024 * 60.00163 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0027 11 6 1.4845 -4.9834 0.1296 12 6 2.4787 -6.1463 0.1300 13 6 3.2731 -6.1387 -1.1776 14 6 4.2678 -7.3012 -1.1769 15 1 4.9049 -7.2349 -2.0588 16 9 5.0585 -7.2377 -0.0246 17 6 3.5034 -8.6264 -1.1984 18 9 2.6129 -8.6337 -2.2773 19 9 4.4084 -9.6847 -1.3337 20 9 2.7899 -8.7728 -0.0039 21 6 4.0339 -4.8173 -1.3044 22 6 3.0401 -3.6546 -1.3046 23 1 -0.4851 0.8400 0.0004 24 1 0.6240 -2.5575 -0.8880 25 1 0.6247 -2.5563 0.8920 26 1 2.9294 -3.5545 0.8445 27 1 0.8004 -5.0910 -0.7121 28 1 0.9183 -4.9887 1.0609 29 1 1.9367 -7.0877 0.2199 30 1 3.1632 -6.0389 0.9715 31 1 2.5886 -6.2462 -2.0191 32 1 4.7183 -4.7100 -0.4629 33 1 4.5995 -4.8117 -2.2362 34 1 2.3560 -3.7622 -2.1464 35 1 3.5821 -2.7133 -1.3950 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261156752.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:49 Heat of formation + Delta-G solvation = -254.541242 kcal Electronic energy + Delta-G solvation = -21512.248911 eV Core-core repulsion = 17621.471787 eV Total energy + Delta-G solvation = -3890.777124 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.37301 -49.21565 -48.78190 -48.50843 -39.71621 -35.66132 -33.90039 -31.67263 -30.81918 -28.05695 -25.45759 -23.66202 -23.54412 -21.58681 -20.60263 -19.76958 -19.52358 -19.03338 -18.40169 -17.06202 -16.79690 -16.50376 -15.82036 -15.62094 -15.51762 -15.28642 -15.09339 -14.97309 -14.95184 -14.84374 -14.61501 -14.33894 -13.95921 -13.48822 -13.35077 -12.99705 -12.76540 -12.60908 -12.41734 -12.27835 -11.90215 -11.84279 -11.79800 -11.42763 -11.14950 -10.75829 -10.57280 -10.49161 -8.15887 -6.25218 1.40824 1.41754 1.42369 1.52550 2.43023 2.47735 2.71104 2.83487 3.17491 3.31688 3.60642 3.63956 3.90361 4.10700 4.23622 4.40322 4.47854 4.60035 4.65424 4.68054 4.74708 5.05327 5.14850 5.16509 5.29041 5.31674 5.43068 5.47173 5.57057 5.64624 5.87043 5.93361 6.32051 6.91591 7.43358 8.96067 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.043942 B = 0.004198 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.045770 B = 6667.703245 C = 6901.762320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.002 4.002 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.528 4.528 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.077 4.077 11 C -0.107 4.107 12 C -0.125 4.125 13 C -0.114 4.114 14 C 0.067 3.933 15 H 0.165 0.835 16 F -0.186 7.186 17 C 0.432 3.568 18 F -0.170 7.170 19 F -0.180 7.180 20 F -0.178 7.178 21 C -0.102 4.102 22 C -0.098 4.098 23 H 0.261 0.739 24 H -0.010 1.010 25 H -0.018 1.018 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.790 -17.600 -4.890 20.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.199 4.199 3 Si 0.784 3.216 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.080 0.920 9 C -0.007 4.007 10 C -0.095 4.095 11 C -0.144 4.144 12 C -0.162 4.162 13 C -0.133 4.133 14 C 0.030 3.970 15 H 0.183 0.817 16 F -0.166 7.166 17 C 0.377 3.623 18 F -0.152 7.152 19 F -0.161 7.161 20 F -0.159 7.159 21 C -0.140 4.140 22 C -0.136 4.136 23 H 0.070 0.930 24 H 0.009 0.991 25 H 0.000 1.000 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.130 0.870 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.656 -17.528 -4.852 20.591 hybrid contribution -0.311 0.888 0.365 1.009 sum 9.345 -16.640 -4.487 19.605 Atomic orbital electron populations 1.70103 1.07822 1.27498 1.52345 1.25945 0.95650 1.03188 0.95151 0.85533 0.78710 0.78882 0.78454 1.19741 1.21153 1.18787 1.21675 0.93439 0.92097 1.49384 0.92024 1.19050 0.94139 0.93253 0.94244 1.21087 0.96838 0.93894 0.97690 1.21504 0.97677 0.94072 1.01165 1.21860 0.98249 0.99168 0.96964 1.21884 0.96709 0.93572 1.01117 1.23039 0.93488 0.90695 0.89811 0.81749 1.92905 1.75026 1.96656 1.52044 1.21265 0.78863 0.88173 0.73994 1.93218 1.69668 1.96758 1.55530 1.93218 1.66986 1.60408 1.95504 1.93148 1.79443 1.96138 1.47195 1.21517 0.97388 0.91764 1.03302 1.21365 0.97539 0.97929 0.96740 0.93012 0.99130 0.99988 0.93357 0.92410 0.93126 0.89995 0.91674 0.87009 0.91655 0.89028 0.92780 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.37 13.29 21.45 0.28 -57.09 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 3 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.53 -29.57 8.41 25.60 0.22 -29.35 16 8 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 9 C 0.03 1.58 4.45 29.85 0.13 1.71 16 10 C -0.08 -3.03 2.14 -10.79 -0.02 -3.06 16 11 C -0.11 -3.54 5.20 30.59 0.16 -3.38 16 12 C -0.13 -3.26 4.51 30.59 0.14 -3.12 16 13 C -0.11 -2.42 1.95 -10.79 -0.02 -2.44 16 14 C 0.07 1.14 3.07 30.59 0.09 1.23 16 15 H 0.17 1.61 8.14 -2.39 -0.02 1.59 16 16 F -0.19 -3.97 15.96 44.97 0.72 -3.25 16 17 C 0.43 8.10 2.89 71.98 0.21 8.31 16 18 F -0.17 -3.19 16.46 44.97 0.74 -2.45 16 19 F -0.18 -3.44 17.32 44.97 0.78 -2.66 16 20 F -0.18 -3.95 14.14 44.97 0.64 -3.32 16 21 C -0.10 -2.42 5.12 30.58 0.16 -2.27 16 22 C -0.10 -3.30 5.01 30.58 0.15 -3.15 16 23 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 24 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 25 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 26 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 28 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.08 1.99 5.49 -2.39 -0.01 1.98 16 30 H 0.06 1.77 7.66 -2.39 -0.02 1.76 16 31 H 0.11 2.17 7.48 -2.39 -0.02 2.15 16 32 H 0.06 1.61 7.96 -2.39 -0.02 1.59 16 33 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.05 2.06 6.95 -2.39 -0.02 2.05 16 Total: -1.00 -64.17 292.27 7.95 -56.23 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: 1.09 Total: 1.50 kcal Atomic # 6 Polarization: -36.85 SS G_CDS: 1.67 Total: -35.18 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.28 Total: -57.09 kcal Atomic # 9 Polarization: -14.55 SS G_CDS: 2.87 Total: -11.67 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -64.17 7.95 -56.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261156752.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.315 kcal (2) G-P(sol) polarization free energy of solvation -64.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -254.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds