Wall clock time and date at job start Mon Mar 30 2020 06:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99807 * 2 1 4 4 H 1.48502 * 109.47042 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47086 * 299.99922 * 3 2 1 6 6 H 1.48504 * 109.46953 * 59.99957 * 3 2 1 7 7 C 1.37873 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99644 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00220 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.53011 * 109.47016 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46803 * 57.31080 * 11 10 9 13 13 C 1.53001 * 109.46748 * 297.31192 * 11 10 9 14 14 C 1.52998 * 109.46884 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46869 * 59.99979 * 14 13 11 16 16 C 1.52991 * 109.47405 * 299.99773 * 15 14 13 17 17 C 1.52991 * 109.47092 * 177.31421 * 11 10 9 18 18 F 1.39901 * 109.47388 * 59.99618 * 17 11 10 19 19 C 1.53003 * 109.47155 * 299.99925 * 17 11 10 20 20 F 1.39901 * 109.47123 * 67.24235 * 19 17 11 21 21 F 1.39903 * 109.47091 * 187.24280 * 19 17 11 22 22 F 1.39902 * 109.47100 * 307.23958 * 19 17 11 23 23 H 0.97002 * 119.99920 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47572 * 59.99579 * 9 7 2 25 25 H 1.09000 * 109.46893 * 299.99223 * 9 7 2 26 26 H 1.08993 * 109.47620 * 59.99999 * 10 9 7 27 27 H 1.09001 * 109.47349 * 299.99463 * 10 9 7 28 28 H 1.08998 * 109.47479 * 300.00034 * 13 11 10 29 29 H 1.09001 * 109.46888 * 60.00181 * 13 11 10 30 30 H 1.09002 * 109.47296 * 180.02562 * 14 13 11 31 31 H 1.08998 * 109.47187 * 300.00331 * 14 13 11 32 32 H 1.08998 * 109.46928 * 60.00193 * 15 14 13 33 33 H 1.09004 * 109.46992 * 179.97438 * 15 14 13 34 34 H 1.09004 * 109.47407 * 180.02562 * 16 15 14 35 35 H 1.08998 * 109.47421 * 300.00119 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 1 0.8177 -5.0245 -0.8635 13 6 0.6526 -5.0974 1.2832 14 6 -0.1129 -6.4221 1.2836 15 6 0.8796 -7.5846 1.2156 16 6 1.7073 -7.4743 -0.0663 17 6 2.4731 -6.1491 -0.0664 18 9 3.3236 -6.1011 1.0433 19 6 3.3009 -6.0388 -1.3484 20 9 4.1248 -4.9104 -1.2759 21 9 4.0908 -7.1844 -1.4936 22 9 2.4441 -5.9207 -2.4481 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8904 26 1 2.8720 -3.6043 0.8904 27 1 2.8720 -3.6043 -0.8895 28 1 1.3152 -5.0599 2.1479 29 1 -0.0547 -4.2694 1.3313 30 1 -0.7030 -6.5006 2.1967 31 1 -0.7755 -6.4591 0.4189 32 1 1.5422 -7.5476 2.0803 33 1 0.3343 -8.5284 1.2164 34 1 2.4141 -8.3027 -0.1150 35 1 1.0447 -7.5113 -0.9310 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261160794.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:19 Heat of formation + Delta-G solvation = -231.906201 kcal Electronic energy + Delta-G solvation = -22326.444882 eV Core-core repulsion = 18436.649287 eV Total energy + Delta-G solvation = -3889.795595 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.22229 -48.05049 -47.61508 -47.33427 -38.15113 -34.13680 -32.21334 -31.40980 -28.91800 -26.03119 -24.66313 -22.82585 -21.73825 -20.20672 -19.69663 -18.33405 -18.23408 -18.08778 -16.40821 -15.67685 -15.48628 -14.57478 -14.56645 -14.39081 -14.29591 -14.10155 -13.99479 -13.90362 -13.66489 -13.59381 -13.14332 -12.95333 -12.48290 -12.21578 -12.00589 -11.64613 -11.42491 -11.21966 -10.95940 -10.83165 -10.61260 -10.45722 -10.23904 -10.03895 -9.58151 -9.19394 -9.00805 -8.31713 -5.98701 -3.99963 2.56902 3.32624 3.40130 3.45263 3.61373 3.84884 3.94957 4.29714 4.48646 4.58508 4.67399 4.98420 5.08455 5.16203 5.28705 5.37656 5.43277 5.53190 5.71215 5.82343 5.93594 6.03249 6.08322 6.27887 6.41086 6.55338 6.63722 6.79917 7.12806 7.68946 7.81913 8.01384 8.45322 9.06958 9.64023 11.12666 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.023718 B = 0.006268 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.238878 B = 4466.323954 C = 5142.381699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.026 3.974 10 C -0.130 4.130 11 C -0.107 4.107 12 H 0.094 0.906 13 C -0.112 4.112 14 C -0.125 4.125 15 C -0.114 4.114 16 C -0.142 4.142 17 C 0.092 3.908 18 F -0.174 7.174 19 C 0.435 3.565 20 F -0.161 7.161 21 F -0.183 7.183 22 F -0.171 7.171 23 H 0.259 0.741 24 H 0.015 0.985 25 H 0.021 0.979 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.863 -16.679 0.079 16.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.167 4.167 11 C -0.125 4.125 12 H 0.113 0.887 13 C -0.149 4.149 14 C -0.162 4.162 15 C -0.152 4.152 16 C -0.180 4.180 17 C 0.072 3.928 18 F -0.154 7.154 19 C 0.380 3.620 20 F -0.142 7.142 21 F -0.164 7.164 22 F -0.152 7.152 23 H 0.069 0.931 24 H 0.033 0.967 25 H 0.039 0.961 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.767 -16.558 0.079 16.652 hybrid contribution 0.765 1.003 -0.241 1.285 sum 2.532 -15.554 -0.162 15.760 Atomic orbital electron populations 1.69967 1.06001 1.26420 1.51210 1.25002 0.94836 0.99190 0.95391 0.86567 0.80230 0.83878 0.77541 1.19722 1.21037 1.21037 1.21299 0.93154 0.91044 1.50112 0.92644 1.19098 0.93734 0.90992 0.97259 1.22144 0.99540 0.92679 1.02345 1.21935 0.95959 0.93375 1.01263 0.88742 1.21600 0.99169 0.97708 0.96437 1.21651 0.97753 0.94518 1.02314 1.21482 0.97969 0.99197 0.96530 1.22198 0.99972 0.94147 1.01653 1.22193 0.88745 1.01895 0.79930 1.92918 1.71929 1.97707 1.52877 1.21070 0.79532 0.74103 0.87275 1.93197 1.73700 1.50965 1.96385 1.93170 1.76018 1.50867 1.96395 1.93194 1.69946 1.95716 1.56351 0.93122 0.96684 0.96115 0.92379 0.91379 0.91304 0.89265 0.91414 0.91641 0.91081 0.91037 0.89873 0.88981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -14.79 9.11 -34.45 -0.31 -15.10 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.03 0.66 4.68 -27.89 -0.13 0.53 16 10 C -0.13 -2.69 3.86 -26.73 -0.10 -2.80 16 11 C -0.11 -1.75 1.40 -90.62 -0.13 -1.88 16 12 H 0.09 1.52 7.64 -51.93 -0.40 1.12 16 13 C -0.11 -1.68 4.79 -26.73 -0.13 -1.81 16 14 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 15 C -0.11 -1.18 5.80 -26.73 -0.16 -1.33 16 16 C -0.14 -1.59 4.74 -26.71 -0.13 -1.72 16 17 C 0.09 1.34 0.49 -90.60 -0.04 1.30 16 18 F -0.17 -2.76 15.19 2.25 0.03 -2.73 16 19 C 0.43 6.65 2.34 37.16 0.09 6.73 16 20 F -0.16 -2.83 13.99 2.25 0.03 -2.80 16 21 F -0.18 -2.60 16.52 2.25 0.04 -2.56 16 22 F -0.17 -2.58 16.29 2.25 0.04 -2.54 16 23 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 24 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.02 0.54 6.50 -51.93 -0.34 0.20 16 26 H 0.06 1.24 7.88 -51.93 -0.41 0.83 16 27 H 0.07 1.45 5.31 -51.93 -0.28 1.17 16 28 H 0.07 1.06 7.80 -51.93 -0.41 0.66 16 29 H 0.09 1.50 6.50 -51.93 -0.34 1.16 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.77 7.80 -51.93 -0.41 0.36 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.84 7.64 -51.93 -0.40 0.44 16 35 H 0.09 0.93 8.00 -51.93 -0.42 0.52 16 LS Contribution 288.40 15.07 4.35 4.35 Total: -1.00 -29.82 288.40 -5.71 -35.53 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -4.61 Total: -3.90 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -1.30 Total: -16.13 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.74 Total: -26.09 kcal Atomic # 9 Polarization: -10.78 SS G_CDS: 0.14 Total: -10.64 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.82 -5.71 -35.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261160794.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.376 kcal (2) G-P(sol) polarization free energy of solvation -29.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds