Wall clock time and date at job start Mon Mar 30 2020 06:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99807 * 2 1 4 4 H 1.48502 * 109.47042 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47086 * 299.99922 * 3 2 1 6 6 H 1.48504 * 109.46953 * 59.99957 * 3 2 1 7 7 C 1.37873 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99644 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00220 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.53011 * 109.47016 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46803 * 57.31080 * 11 10 9 13 13 C 1.53001 * 109.46748 * 297.31192 * 11 10 9 14 14 C 1.52998 * 109.46884 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46869 * 59.99979 * 14 13 11 16 16 C 1.52991 * 109.47405 * 299.99773 * 15 14 13 17 17 C 1.52991 * 109.47092 * 177.31421 * 11 10 9 18 18 F 1.39901 * 109.47388 * 59.99618 * 17 11 10 19 19 C 1.53003 * 109.47155 * 299.99925 * 17 11 10 20 20 F 1.39901 * 109.47123 * 67.24235 * 19 17 11 21 21 F 1.39903 * 109.47091 * 187.24280 * 19 17 11 22 22 F 1.39902 * 109.47100 * 307.23958 * 19 17 11 23 23 H 0.97002 * 119.99920 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47572 * 59.99579 * 9 7 2 25 25 H 1.09000 * 109.46893 * 299.99223 * 9 7 2 26 26 H 1.08993 * 109.47620 * 59.99999 * 10 9 7 27 27 H 1.09001 * 109.47349 * 299.99463 * 10 9 7 28 28 H 1.08998 * 109.47479 * 300.00034 * 13 11 10 29 29 H 1.09001 * 109.46888 * 60.00181 * 13 11 10 30 30 H 1.09002 * 109.47296 * 180.02562 * 14 13 11 31 31 H 1.08998 * 109.47187 * 300.00331 * 14 13 11 32 32 H 1.08998 * 109.46928 * 60.00193 * 15 14 13 33 33 H 1.09004 * 109.46992 * 179.97438 * 15 14 13 34 34 H 1.09004 * 109.47407 * 180.02562 * 16 15 14 35 35 H 1.08998 * 109.47421 * 300.00119 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 1 0.8177 -5.0245 -0.8635 13 6 0.6526 -5.0974 1.2832 14 6 -0.1129 -6.4221 1.2836 15 6 0.8796 -7.5846 1.2156 16 6 1.7073 -7.4743 -0.0663 17 6 2.4731 -6.1491 -0.0664 18 9 3.3236 -6.1011 1.0433 19 6 3.3009 -6.0388 -1.3484 20 9 4.1248 -4.9104 -1.2759 21 9 4.0908 -7.1844 -1.4936 22 9 2.4441 -5.9207 -2.4481 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8904 26 1 2.8720 -3.6043 0.8904 27 1 2.8720 -3.6043 -0.8895 28 1 1.3152 -5.0599 2.1479 29 1 -0.0547 -4.2694 1.3313 30 1 -0.7030 -6.5006 2.1967 31 1 -0.7755 -6.4591 0.4189 32 1 1.5422 -7.5476 2.0803 33 1 0.3343 -8.5284 1.2164 34 1 2.4141 -8.3027 -0.1150 35 1 1.0447 -7.5113 -0.9310 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261160794.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:19 Heat of formation + Delta-G solvation = -247.243852 kcal Electronic energy + Delta-G solvation = -22327.109973 eV Core-core repulsion = 18436.649287 eV Total energy + Delta-G solvation = -3890.460685 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.45662 -49.27317 -48.84689 -48.57731 -39.33501 -35.88723 -34.02265 -32.52739 -30.55551 -27.50482 -26.17106 -24.35362 -22.94019 -21.69514 -20.94814 -19.56191 -19.45532 -19.32232 -18.46937 -16.95237 -16.75253 -16.46100 -15.88053 -15.62689 -15.49569 -15.41211 -15.19999 -15.12707 -14.91302 -14.78562 -14.45531 -14.33944 -14.18653 -13.68896 -13.35462 -13.08262 -12.82512 -12.78038 -12.52386 -12.39118 -12.12256 -11.73728 -11.57528 -11.52667 -11.31552 -10.96334 -10.85661 -10.50863 -8.20776 -6.30495 1.36933 1.37778 1.38321 1.51567 2.39457 2.41405 2.68413 2.74748 3.12206 3.16949 3.43783 3.53999 3.96692 4.04178 4.13006 4.20979 4.33989 4.43618 4.61142 4.76465 4.81902 4.92922 4.97775 5.11268 5.15127 5.21439 5.27856 5.34201 5.48227 5.52667 5.75240 5.85760 6.26616 6.85364 7.38051 8.90800 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.023718 B = 0.006268 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.238878 B = 4466.323954 C = 5142.381699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.051 0.949 9 C 0.033 3.967 10 C -0.119 4.119 11 C -0.103 4.103 12 H 0.098 0.902 13 C -0.111 4.111 14 C -0.120 4.120 15 C -0.110 4.110 16 C -0.139 4.139 17 C 0.095 3.905 18 F -0.182 7.182 19 C 0.432 3.568 20 F -0.179 7.179 21 F -0.174 7.174 22 F -0.170 7.170 23 H 0.264 0.736 24 H -0.008 1.008 25 H 0.006 0.994 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.963 -18.018 0.145 18.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.070 0.930 9 C -0.004 4.004 10 C -0.156 4.156 11 C -0.122 4.122 12 H 0.117 0.883 13 C -0.148 4.148 14 C -0.157 4.157 15 C -0.147 4.147 16 C -0.177 4.177 17 C 0.075 3.925 18 F -0.163 7.163 19 C 0.377 3.623 20 F -0.161 7.161 21 F -0.155 7.155 22 F -0.151 7.151 23 H 0.073 0.927 24 H 0.011 0.989 25 H 0.024 0.976 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.872 -17.910 0.146 18.008 hybrid contribution 0.732 1.437 -0.275 1.636 sum 2.604 -16.473 -0.129 16.678 Atomic orbital electron populations 1.70076 1.07487 1.27636 1.51691 1.25882 0.95782 1.02978 0.94767 0.85489 0.78967 0.79187 0.77969 1.19147 1.20185 1.20097 1.21718 0.93299 0.92792 1.50497 0.93048 1.18952 0.94001 0.92085 0.95322 1.21917 0.98511 0.93690 1.01474 1.21810 0.96233 0.91893 1.02266 0.88350 1.21551 0.98630 0.99343 0.95283 1.21633 0.97881 0.92634 1.03552 1.21501 0.97575 0.99894 0.95733 1.22320 1.00309 0.92110 1.02938 1.22281 0.88108 1.02959 0.79170 1.92903 1.72262 1.97811 1.53301 1.21235 0.79505 0.73811 0.87708 1.93157 1.74289 1.52130 1.96489 1.93185 1.75804 1.50135 1.96377 1.93194 1.69841 1.95709 1.56376 0.92733 0.98926 0.97599 0.93411 0.92010 0.92109 0.91897 0.89964 0.90725 0.91514 0.87775 0.88085 0.87427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.50 13.29 21.45 0.28 -56.21 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.96 45.22 29.54 68.60 2.03 47.25 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.55 -31.93 9.11 25.60 0.23 -31.70 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.03 1.76 4.68 29.85 0.14 1.90 16 10 C -0.12 -5.07 3.86 30.60 0.12 -4.95 16 11 C -0.10 -3.38 1.40 -10.79 -0.02 -3.40 16 12 H 0.10 3.14 7.64 -2.39 -0.02 3.12 16 13 C -0.11 -3.32 4.79 30.59 0.15 -3.17 16 14 C -0.12 -2.48 5.92 30.59 0.18 -2.30 16 15 C -0.11 -1.88 5.80 30.59 0.18 -1.70 16 16 C -0.14 -2.68 4.74 30.61 0.15 -2.53 16 17 C 0.09 2.62 0.49 -10.78 -0.01 2.62 16 18 F -0.18 -5.61 15.19 44.97 0.68 -4.93 16 19 C 0.43 12.75 2.34 71.98 0.17 12.92 16 20 F -0.18 -6.31 13.99 44.97 0.63 -5.68 16 21 F -0.17 -4.61 16.52 44.97 0.74 -3.87 16 22 F -0.17 -4.94 16.29 44.97 0.73 -4.21 16 23 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 24 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 25 H 0.01 0.32 6.50 -2.39 -0.02 0.30 16 26 H 0.05 2.10 7.88 -2.39 -0.02 2.08 16 27 H 0.06 2.70 5.31 -2.39 -0.01 2.69 16 28 H 0.06 1.89 7.80 -2.39 -0.02 1.87 16 29 H 0.06 2.20 6.50 -2.39 -0.02 2.18 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.23 7.80 -2.39 -0.02 1.22 16 33 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.10 1.65 7.64 -2.38 -0.02 1.63 16 35 H 0.11 1.78 8.00 -2.39 -0.02 1.76 16 Total: -1.00 -64.85 288.40 7.94 -56.91 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: 1.09 Total: 2.36 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: 1.75 Total: -31.62 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.28 Total: -56.21 kcal Atomic # 9 Polarization: -21.47 SS G_CDS: 2.79 Total: -18.69 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -64.85 7.94 -56.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261160794.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.335 kcal (2) G-P(sol) polarization free energy of solvation -64.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds