Wall clock time and date at job start Mon Mar 30 2020 06:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00067 * 2 1 4 4 H 1.48499 * 109.46947 * 270.00157 * 3 2 1 5 5 H 1.48506 * 109.47070 * 29.99723 * 3 2 1 6 6 H 1.48494 * 109.47263 * 149.99948 * 3 2 1 7 7 C 1.37878 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00337 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99933 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47300 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47577 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.47262 * 302.72858 * 11 10 9 13 13 C 1.53002 * 109.47247 * 62.72097 * 11 10 9 14 14 C 1.53006 * 109.46530 * 60.00270 * 13 11 10 15 15 C 1.52997 * 109.47079 * 60.00244 * 14 13 11 16 16 C 1.53001 * 109.47349 * 299.99700 * 15 14 13 17 17 C 1.52997 * 109.47501 * 182.72551 * 11 10 9 18 18 F 1.39902 * 109.47191 * 179.97438 * 17 11 10 19 19 C 1.53002 * 109.46992 * 60.00039 * 17 11 10 20 20 F 1.39895 * 109.47021 * 52.69578 * 19 17 11 21 21 F 1.39906 * 109.47060 * 172.69640 * 19 17 11 22 22 F 1.39897 * 109.47027 * 292.69599 * 19 17 11 23 23 H 0.97004 * 120.00528 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47270 * 60.00075 * 9 7 2 25 25 H 1.09001 * 109.47602 * 300.00235 * 9 7 2 26 26 H 1.09001 * 109.47385 * 59.99701 * 10 9 7 27 27 H 1.08998 * 109.46974 * 299.99847 * 10 9 7 28 28 H 1.08998 * 109.47658 * 300.00709 * 13 11 10 29 29 H 1.08998 * 109.47239 * 179.97438 * 13 11 10 30 30 H 1.08999 * 109.46520 * 179.97438 * 14 13 11 31 31 H 1.08996 * 109.47403 * 299.99964 * 14 13 11 32 32 H 1.09005 * 109.47197 * 59.99429 * 15 14 13 33 33 H 1.08999 * 109.47368 * 179.97438 * 15 14 13 34 34 H 1.08998 * 109.46876 * 300.00671 * 16 15 14 35 35 H 1.08994 * 109.47288 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4803 -4.9871 -0.0001 12 1 0.8171 -5.0243 0.8642 13 6 0.6532 -5.0979 -1.2825 14 6 1.5840 -5.0458 -2.4957 15 6 2.5768 -6.2079 -2.4271 16 6 3.4039 -6.0971 -1.1447 17 6 2.4731 -6.1492 0.0685 18 9 1.7736 -7.3608 0.0685 19 6 3.3001 -6.0384 1.3509 20 9 2.4427 -5.9185 2.4498 21 9 4.0888 -7.1846 1.4977 22 9 4.1250 -4.9109 1.2779 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5568 0.8902 26 1 2.8720 -3.6043 0.8905 27 1 2.8718 -3.6043 -0.8895 28 1 -0.0541 -4.2700 -1.3314 29 1 0.1086 -6.0421 -1.2832 30 1 0.9948 -5.1252 -3.4093 31 1 2.1290 -4.1018 -2.4953 32 1 2.0318 -7.1519 -2.4275 33 1 3.2396 -6.1710 -3.2916 34 1 3.9488 -5.1531 -1.1442 35 1 4.1108 -6.9253 -1.0956 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261160796.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:26 Heat of formation + Delta-G solvation = -228.739071 kcal Electronic energy + Delta-G solvation = -22478.688933 eV Core-core repulsion = 18589.030675 eV Total energy + Delta-G solvation = -3889.658258 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.22314 -48.08755 -47.56593 -47.40285 -38.54832 -33.69967 -32.01988 -31.36749 -29.07316 -26.03333 -24.60620 -22.80794 -21.92877 -21.05122 -18.71408 -18.32152 -18.24345 -17.84547 -16.47089 -15.78190 -15.31579 -15.08467 -14.49800 -14.37645 -14.34480 -14.03471 -13.98102 -13.84505 -13.67915 -13.55353 -13.34925 -12.70247 -12.40927 -12.11620 -11.96070 -11.72303 -11.35668 -11.26228 -11.04697 -10.85603 -10.59181 -10.35523 -10.08031 -9.97142 -9.52837 -9.25574 -9.06531 -8.34054 -6.01111 -4.02989 2.57364 3.31036 3.37787 3.41248 3.61609 3.84812 3.97436 4.34087 4.45721 4.60596 4.71525 5.08115 5.17917 5.27903 5.34042 5.35944 5.49883 5.62214 5.76893 5.96105 6.01166 6.08180 6.19611 6.27375 6.51346 6.54809 6.59465 6.77409 7.08780 7.66190 7.78874 7.98577 8.41188 9.03797 9.61071 11.10110 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.023686 B = 0.006431 C = 0.005767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.867447 B = 4352.853563 C = 4854.141453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.026 3.974 10 C -0.128 4.128 11 C -0.108 4.108 12 H 0.089 0.911 13 C -0.109 4.109 14 C -0.127 4.127 15 C -0.112 4.112 16 C -0.143 4.143 17 C 0.092 3.908 18 F -0.181 7.181 19 C 0.436 3.564 20 F -0.173 7.173 21 F -0.182 7.182 22 F -0.160 7.160 23 H 0.260 0.740 24 H 0.022 0.978 25 H 0.015 0.985 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.187 -13.811 -2.447 14.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.165 4.165 11 C -0.126 4.126 12 H 0.107 0.893 13 C -0.146 4.146 14 C -0.164 4.164 15 C -0.149 4.149 16 C -0.181 4.181 17 C 0.072 3.928 18 F -0.161 7.161 19 C 0.381 3.619 20 F -0.154 7.154 21 F -0.164 7.164 22 F -0.141 7.141 23 H 0.070 0.930 24 H 0.040 0.960 25 H 0.033 0.967 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.037 -13.728 -2.408 14.820 hybrid contribution 0.525 0.810 0.415 1.051 sum 5.562 -12.918 -1.992 14.205 Atomic orbital electron populations 1.69954 1.06009 1.26573 1.50897 1.25000 0.94822 0.99177 0.95374 0.86630 0.79923 0.83614 0.78068 1.20703 1.21258 1.19879 1.21228 0.93032 0.90999 1.50486 0.92707 1.19093 0.93752 0.90833 0.97403 1.22212 0.99672 0.92420 1.02240 1.21902 0.96346 0.93307 1.01081 0.89315 1.21516 0.97988 1.02611 0.92525 1.21645 0.97619 0.99079 0.98082 1.21459 0.98004 0.99739 0.95734 1.22218 0.97600 1.05131 0.93142 1.22225 0.93684 0.84594 0.92325 1.92902 1.80211 1.45983 1.97035 1.21048 0.79586 0.74077 0.87205 1.93207 1.69844 1.95620 1.56762 1.93178 1.75958 1.50836 1.96402 1.93172 1.73476 1.51092 1.96369 0.93028 0.96011 0.96690 0.91349 0.91949 0.89380 0.92203 0.91674 0.90155 0.91510 0.90985 0.87989 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.64 4.68 -27.89 -0.13 0.51 16 10 C -0.13 -2.48 3.32 -26.73 -0.09 -2.57 16 11 C -0.11 -1.77 1.82 -90.62 -0.16 -1.94 16 12 H 0.09 1.53 7.64 -51.93 -0.40 1.14 16 13 C -0.11 -1.65 5.04 -26.73 -0.13 -1.79 16 14 C -0.13 -1.70 5.65 -26.73 -0.15 -1.86 16 15 C -0.11 -1.30 5.80 -26.73 -0.16 -1.45 16 16 C -0.14 -1.80 4.46 -26.73 -0.12 -1.92 16 17 C 0.09 1.34 0.61 -90.62 -0.06 1.29 16 18 F -0.18 -2.70 15.66 2.25 0.04 -2.67 16 19 C 0.44 6.69 2.34 37.16 0.09 6.78 16 20 F -0.17 -2.85 16.52 2.25 0.04 -2.81 16 21 F -0.18 -2.66 16.97 2.25 0.04 -2.62 16 22 F -0.16 -2.56 13.30 2.25 0.03 -2.53 16 23 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.02 0.55 6.49 -51.93 -0.34 0.21 16 25 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 1.36 5.31 -51.93 -0.28 1.09 16 27 H 0.06 1.15 4.81 -51.93 -0.25 0.90 16 28 H 0.09 1.48 6.50 -51.93 -0.34 1.15 16 29 H 0.06 0.83 7.80 -51.93 -0.41 0.43 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.21 6.37 -51.93 -0.33 0.88 16 32 H 0.07 0.75 7.80 -51.93 -0.41 0.35 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 1.31 5.99 -51.93 -0.31 1.00 16 35 H 0.08 0.88 8.00 -51.93 -0.42 0.46 16 LS Contribution 282.07 15.07 4.25 4.25 Total: -1.00 -28.79 282.07 -5.49 -34.29 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -4.27 Total: -2.60 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -1.32 Total: -16.05 kcal Atomic # 7 Polarization: -26.42 SS G_CDS: 0.74 Total: -25.68 kcal Atomic # 9 Polarization: -10.77 SS G_CDS: 0.14 Total: -10.63 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.79 -5.49 -34.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261160796.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.454 kcal (2) G-P(sol) polarization free energy of solvation -28.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds