Wall clock time and date at job start Mon Mar 30 2020 06:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00067 * 2 1 4 4 H 1.48499 * 109.46947 * 270.00157 * 3 2 1 5 5 H 1.48506 * 109.47070 * 29.99723 * 3 2 1 6 6 H 1.48494 * 109.47263 * 149.99948 * 3 2 1 7 7 C 1.37878 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00337 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99933 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47300 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47577 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.47262 * 302.72858 * 11 10 9 13 13 C 1.53002 * 109.47247 * 62.72097 * 11 10 9 14 14 C 1.53006 * 109.46530 * 60.00270 * 13 11 10 15 15 C 1.52997 * 109.47079 * 60.00244 * 14 13 11 16 16 C 1.53001 * 109.47349 * 299.99700 * 15 14 13 17 17 C 1.52997 * 109.47501 * 182.72551 * 11 10 9 18 18 F 1.39902 * 109.47191 * 179.97438 * 17 11 10 19 19 C 1.53002 * 109.46992 * 60.00039 * 17 11 10 20 20 F 1.39895 * 109.47021 * 52.69578 * 19 17 11 21 21 F 1.39906 * 109.47060 * 172.69640 * 19 17 11 22 22 F 1.39897 * 109.47027 * 292.69599 * 19 17 11 23 23 H 0.97004 * 120.00528 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47270 * 60.00075 * 9 7 2 25 25 H 1.09001 * 109.47602 * 300.00235 * 9 7 2 26 26 H 1.09001 * 109.47385 * 59.99701 * 10 9 7 27 27 H 1.08998 * 109.46974 * 299.99847 * 10 9 7 28 28 H 1.08998 * 109.47658 * 300.00709 * 13 11 10 29 29 H 1.08998 * 109.47239 * 179.97438 * 13 11 10 30 30 H 1.08999 * 109.46520 * 179.97438 * 14 13 11 31 31 H 1.08996 * 109.47403 * 299.99964 * 14 13 11 32 32 H 1.09005 * 109.47197 * 59.99429 * 15 14 13 33 33 H 1.08999 * 109.47368 * 179.97438 * 15 14 13 34 34 H 1.08998 * 109.46876 * 300.00671 * 16 15 14 35 35 H 1.08994 * 109.47288 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4803 -4.9871 -0.0001 12 1 0.8171 -5.0243 0.8642 13 6 0.6532 -5.0979 -1.2825 14 6 1.5840 -5.0458 -2.4957 15 6 2.5768 -6.2079 -2.4271 16 6 3.4039 -6.0971 -1.1447 17 6 2.4731 -6.1492 0.0685 18 9 1.7736 -7.3608 0.0685 19 6 3.3001 -6.0384 1.3509 20 9 2.4427 -5.9185 2.4498 21 9 4.0888 -7.1846 1.4977 22 9 4.1250 -4.9109 1.2779 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5568 0.8902 26 1 2.8720 -3.6043 0.8905 27 1 2.8718 -3.6043 -0.8895 28 1 -0.0541 -4.2700 -1.3314 29 1 0.1086 -6.0421 -1.2832 30 1 0.9948 -5.1252 -3.4093 31 1 2.1290 -4.1018 -2.4953 32 1 2.0318 -7.1519 -2.4275 33 1 3.2396 -6.1710 -3.2916 34 1 3.9488 -5.1531 -1.1442 35 1 4.1108 -6.9253 -1.0956 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261160796.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:25 Heat of formation + Delta-G solvation = -243.105017 kcal Electronic energy + Delta-G solvation = -22479.311887 eV Core-core repulsion = 18589.030675 eV Total energy + Delta-G solvation = -3890.281212 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.46339 -49.30405 -48.80333 -48.63991 -39.80116 -35.54188 -33.63883 -32.55649 -30.69401 -27.51868 -26.19793 -24.21069 -23.08112 -22.64032 -20.01240 -19.56389 -19.46745 -19.13652 -18.42836 -17.09690 -16.57218 -16.45594 -16.38998 -15.64722 -15.59067 -15.25722 -15.21851 -15.07118 -14.92843 -14.79533 -14.53620 -14.32661 -14.00408 -13.62433 -13.33796 -13.10790 -12.79641 -12.77971 -12.56312 -12.39534 -12.22188 -11.77096 -11.54291 -11.29420 -11.08988 -10.99041 -10.90544 -10.47274 -8.17364 -6.26908 1.35776 1.40810 1.41744 1.52540 2.39822 2.42044 2.64607 2.75023 3.15647 3.17046 3.39629 3.54485 3.96337 4.06654 4.14968 4.19452 4.32624 4.48561 4.65162 4.73466 4.85063 4.92991 4.99206 5.08111 5.14909 5.24468 5.29866 5.34971 5.51211 5.60616 5.78969 5.90417 6.28700 6.90129 7.41755 8.94166 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.023686 B = 0.006431 C = 0.005767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.867447 B = 4352.853563 C = 4854.141453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.958 3.042 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.113 4.113 11 C -0.106 4.106 12 H 0.073 0.927 13 C -0.108 4.108 14 C -0.126 4.126 15 C -0.105 4.105 16 C -0.144 4.144 17 C 0.099 3.901 18 F -0.179 7.179 19 C 0.433 3.567 20 F -0.183 7.183 21 F -0.175 7.175 22 F -0.164 7.164 23 H 0.262 0.738 24 H 0.008 0.992 25 H -0.018 1.018 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.698 -14.570 -3.496 16.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.783 3.217 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.576 4.576 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.150 4.150 11 C -0.125 4.125 12 H 0.091 0.909 13 C -0.145 4.145 14 C -0.163 4.163 15 C -0.143 4.143 16 C -0.182 4.182 17 C 0.079 3.921 18 F -0.159 7.159 19 C 0.378 3.622 20 F -0.165 7.165 21 F -0.156 7.156 22 F -0.146 7.146 23 H 0.071 0.929 24 H 0.026 0.974 25 H 0.000 1.000 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.560 -14.501 -3.458 16.287 hybrid contribution 0.013 1.021 0.777 1.283 sum 6.572 -13.480 -2.681 15.234 Atomic orbital electron populations 1.70086 1.07646 1.27571 1.51908 1.25899 0.95692 1.03059 0.94982 0.85549 0.78692 0.78926 0.78521 1.19610 1.21050 1.18988 1.21682 0.93486 0.92384 1.50079 0.92320 1.18957 0.94130 0.92335 0.95086 1.21968 0.98482 0.92017 1.02545 1.21752 0.96533 0.92836 1.01374 0.90870 1.21492 0.97917 1.02311 0.92807 1.21636 0.97780 0.99231 0.97679 1.21462 0.97776 0.98957 0.96072 1.22326 0.97567 1.05973 0.92318 1.22126 0.93314 0.83618 0.93053 1.92908 1.80287 1.45664 1.97062 1.21194 0.79635 0.74130 0.87220 1.93189 1.70194 1.95684 1.57398 1.93191 1.75725 1.50303 1.96370 1.93157 1.73577 1.51458 1.96375 0.92915 0.97410 0.99953 0.91938 0.90649 0.92000 0.90623 0.90083 0.92009 0.90576 0.88395 0.88265 0.88033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.54 -30.06 9.11 25.60 0.23 -29.83 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.03 1.62 4.68 29.85 0.14 1.76 16 10 C -0.11 -4.41 3.32 30.59 0.10 -4.31 16 11 C -0.11 -3.49 1.82 -10.79 -0.02 -3.51 16 12 H 0.07 2.61 7.64 -2.38 -0.02 2.59 16 13 C -0.11 -3.23 5.04 30.60 0.15 -3.07 16 14 C -0.13 -3.16 5.65 30.60 0.17 -2.99 16 15 C -0.11 -2.09 5.80 30.59 0.18 -1.91 16 16 C -0.14 -3.22 4.46 30.59 0.14 -3.08 16 17 C 0.10 2.74 0.61 -10.79 -0.01 2.73 16 18 F -0.18 -4.96 15.66 44.97 0.70 -4.25 16 19 C 0.43 12.78 2.34 71.98 0.17 12.95 16 20 F -0.18 -5.99 16.52 44.97 0.74 -5.25 16 21 F -0.17 -4.74 16.97 44.97 0.76 -3.98 16 22 F -0.16 -5.10 13.30 44.97 0.60 -4.51 16 23 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 24 H 0.01 0.41 6.49 -2.39 -0.02 0.39 16 25 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 26 H 0.06 2.51 5.31 -2.39 -0.01 2.50 16 27 H 0.08 2.74 4.81 -2.39 -0.01 2.73 16 28 H 0.06 2.16 6.50 -2.39 -0.02 2.14 16 29 H 0.08 2.01 7.80 -2.39 -0.02 1.99 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 1.78 6.37 -2.39 -0.02 1.77 16 32 H 0.08 1.42 7.80 -2.38 -0.02 1.40 16 33 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.10 2.30 5.99 -2.39 -0.01 2.28 16 35 H 0.10 1.86 8.00 -2.39 -0.02 1.84 16 Total: -1.00 -61.82 282.07 7.95 -53.87 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: 1.11 Total: 4.64 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 1.72 Total: -30.70 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.28 Total: -55.85 kcal Atomic # 9 Polarization: -20.79 SS G_CDS: 2.81 Total: -17.98 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -61.82 7.95 -53.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261160796.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.235 kcal (2) G-P(sol) polarization free energy of solvation -61.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds