Wall clock time and date at job start Mon Mar 30 2020 06:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99635 * 2 1 4 4 H 1.48494 * 109.47247 * 270.00207 * 3 2 1 5 5 H 1.48500 * 109.47236 * 30.00462 * 3 2 1 6 6 H 1.48498 * 109.46987 * 149.99822 * 3 2 1 7 7 C 1.37874 * 120.00348 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99867 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00078 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47185 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47170 * 54.99831 * 10 9 7 12 12 C 1.53005 * 109.47374 * 295.00444 * 10 9 7 13 13 C 1.53008 * 109.46789 * 300.00136 * 12 10 9 14 14 C 1.53001 * 109.47001 * 299.99866 * 13 12 10 15 15 C 1.52993 * 109.47105 * 59.99921 * 14 13 12 16 16 H 1.09004 * 109.47128 * 60.00233 * 15 14 13 17 17 C 1.53001 * 109.47105 * 179.97438 * 15 14 13 18 18 H 1.08997 * 109.47673 * 173.83365 * 17 15 14 19 19 F 1.39907 * 109.46975 * 53.83479 * 17 15 14 20 20 C 1.52999 * 109.47067 * 293.83539 * 17 15 14 21 21 F 1.39898 * 109.47126 * 64.75664 * 20 17 15 22 22 F 1.39899 * 109.47124 * 184.75490 * 20 17 15 23 23 F 1.39900 * 109.47407 * 304.75677 * 20 17 15 24 24 C 1.52996 * 109.47485 * 300.00086 * 15 14 13 25 25 H 0.96998 * 120.00304 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.46627 * 60.00220 * 9 7 2 27 27 H 1.08997 * 109.47148 * 300.00489 * 9 7 2 28 28 H 1.09000 * 109.47168 * 59.99283 * 12 10 9 29 29 H 1.08994 * 109.47564 * 179.97438 * 12 10 9 30 30 H 1.08994 * 109.46822 * 59.99858 * 13 12 10 31 31 H 1.08997 * 109.46571 * 180.02562 * 13 12 10 32 32 H 1.09004 * 109.46937 * 300.00036 * 14 13 12 33 33 H 1.09000 * 109.47134 * 180.02562 * 14 13 12 34 34 H 1.09005 * 109.47555 * 180.02562 * 24 15 14 35 35 H 1.09002 * 109.47327 * 299.99725 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5117 -1.1939 -0.0011 10 6 4.0217 -2.6363 -0.0023 11 1 3.5868 -3.1748 -0.8442 12 6 3.6174 -3.3214 1.3047 13 6 4.2279 -2.5654 2.4867 14 6 5.7527 -2.5671 2.3605 15 6 6.1569 -1.8822 1.0535 16 1 5.7935 -0.8545 1.0543 17 6 7.6817 -1.8833 0.9275 18 1 7.9658 -1.4953 -0.0506 19 9 8.1603 -3.1904 1.0676 20 6 8.2844 -0.9995 2.0214 21 9 8.0114 -1.5575 3.2749 22 9 9.6690 -0.9131 1.8410 23 9 7.7239 0.2803 1.9486 24 6 5.5465 -2.6380 -0.1285 25 1 -0.4850 0.8400 0.0004 26 1 3.8753 -0.6802 0.8889 27 1 3.8746 -0.6798 -0.8911 28 1 2.5312 -3.3201 1.3947 29 1 3.9804 -4.3491 1.3037 30 1 3.8645 -1.5379 2.4875 31 1 3.9402 -3.0538 3.4178 32 1 6.1161 -3.5948 2.3596 33 1 6.1876 -2.0290 3.2027 34 1 5.8349 -2.1503 -1.0597 35 1 5.9099 -3.6656 -0.1294 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261166682.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:07 Heat of formation + Delta-G solvation = -231.486283 kcal Electronic energy + Delta-G solvation = -22159.024585 eV Core-core repulsion = 18269.247199 eV Total energy + Delta-G solvation = -3889.777386 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.44920 -48.28668 -47.86047 -47.57537 -38.74309 -33.55623 -32.19596 -30.98465 -28.60512 -27.38634 -23.85598 -22.67916 -21.88663 -21.03868 -18.86921 -18.69948 -18.24375 -17.65150 -16.78380 -16.13442 -15.76053 -14.98468 -14.62610 -14.54318 -14.36343 -14.26049 -14.14259 -13.93168 -13.85285 -13.57266 -13.37346 -12.99275 -12.43648 -12.21468 -12.01371 -11.55843 -11.39985 -11.23323 -11.07591 -10.88606 -10.41738 -10.25919 -9.88114 -9.71250 -9.41982 -9.32834 -8.96551 -8.52609 -6.04077 -4.00924 2.33606 3.28927 3.37555 3.37835 3.39116 3.65113 3.74756 4.27010 4.44274 4.50409 4.67037 5.06147 5.18510 5.30069 5.50755 5.67982 5.76673 5.85282 5.89367 5.95369 5.99665 6.29661 6.35023 6.41077 6.63351 6.70744 6.74883 6.97831 7.10859 7.28028 7.44207 7.80691 8.54957 9.01699 9.58962 11.09384 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.024298 B = 0.006561 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.065389 B = 4266.432545 C = 4828.467517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.066 3.934 3 Si 0.874 3.126 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.072 4.072 11 H 0.066 0.934 12 C -0.104 4.104 13 C -0.116 4.116 14 C -0.129 4.129 15 C -0.119 4.119 16 H 0.107 0.893 17 C 0.061 3.939 18 H 0.127 0.873 19 F -0.178 7.178 20 C 0.430 3.570 21 F -0.168 7.168 22 F -0.181 7.181 23 F -0.169 7.169 24 C -0.105 4.105 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.008 0.992 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.810 -3.608 3.220 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.702 3.298 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.551 4.551 8 H 0.091 0.909 9 C -0.050 4.050 10 C -0.091 4.091 11 H 0.085 0.915 12 C -0.142 4.142 13 C -0.153 4.153 14 C -0.166 4.166 15 C -0.138 4.138 16 H 0.125 0.875 17 C 0.023 3.977 18 H 0.144 0.856 19 F -0.159 7.159 20 C 0.375 3.625 21 F -0.150 7.150 22 F -0.162 7.162 23 F -0.151 7.151 24 C -0.143 4.143 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.027 0.973 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.684 -3.506 3.256 17.356 hybrid contribution 0.558 1.102 0.137 1.243 sum 17.242 -2.405 3.393 17.736 Atomic orbital electron populations 1.69911 1.06268 1.26754 1.51457 1.25020 0.94661 0.98999 0.94811 0.86866 0.80464 0.84034 0.78452 1.20419 1.21499 1.18976 1.21132 0.89448 0.94273 1.50204 0.90900 1.19749 0.97277 0.91827 0.96164 1.20986 0.91324 0.99308 0.97472 0.91511 1.21444 1.01683 0.96780 0.94243 1.21499 0.93211 1.02439 0.98160 1.21909 0.98205 1.00978 0.95557 1.21984 0.88211 1.04289 0.99320 0.87464 1.22975 0.97929 0.78962 0.97825 0.85554 1.92899 1.89462 1.36659 1.96837 1.21202 0.76547 0.80641 0.84075 1.93147 1.92796 1.84858 1.44160 1.93208 1.31416 1.96346 1.95249 1.93234 1.84836 1.40690 1.96295 1.21637 0.97938 0.99305 0.95397 0.92834 0.95970 0.97344 0.90617 0.93942 0.90570 0.92642 0.91536 0.90907 0.92007 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.96 55.43 0.77 -26.64 16 2 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 3 Si 0.87 21.26 27.47 -169.99 -4.67 16.59 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.51 -13.86 8.96 -34.44 -0.31 -14.17 16 8 H 0.07 2.13 7.30 -52.49 -0.38 1.74 16 9 C -0.01 -0.29 2.81 -27.88 -0.08 -0.37 16 10 C -0.07 -1.32 2.61 -90.62 -0.24 -1.55 16 11 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 12 C -0.10 -1.81 5.26 -26.72 -0.14 -1.95 16 13 C -0.12 -1.88 5.65 -26.73 -0.15 -2.03 16 14 C -0.13 -1.84 4.52 -26.73 -0.12 -1.96 16 15 C -0.12 -1.67 1.69 -90.62 -0.15 -1.82 16 16 H 0.11 1.64 5.90 -51.93 -0.31 1.33 16 17 C 0.06 0.71 3.06 -26.73 -0.08 0.63 16 18 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 19 F -0.18 -2.25 15.98 2.25 0.04 -2.21 16 20 C 0.43 5.28 2.89 37.16 0.11 5.38 16 21 F -0.17 -2.20 14.09 2.25 0.03 -2.16 16 22 F -0.18 -2.18 17.32 2.25 0.04 -2.14 16 23 F -0.17 -2.22 16.50 2.25 0.04 -2.18 16 24 C -0.11 -1.53 4.66 -26.73 -0.12 -1.66 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.02 0.49 3.89 -51.93 -0.20 0.29 16 27 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 28 H 0.08 1.50 6.95 -51.93 -0.36 1.14 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.41 6.32 -51.93 -0.33 1.08 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.91 7.66 -51.93 -0.40 0.51 16 33 H 0.07 1.00 5.44 -51.93 -0.28 0.72 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.83 7.97 -51.93 -0.41 0.42 16 LS Contribution 281.66 15.07 4.24 4.24 Total: -1.00 -28.89 281.66 -5.24 -34.13 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -4.35 Total: -1.89 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -1.39 Total: -17.73 kcal Atomic # 7 Polarization: -27.42 SS G_CDS: 0.77 Total: -26.64 kcal Atomic # 9 Polarization: -8.84 SS G_CDS: 0.14 Total: -8.70 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.89 -5.24 -34.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261166682.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.360 kcal (2) G-P(sol) polarization free energy of solvation -28.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds