Wall clock time and date at job start Mon Mar 30 2020 06:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99635 * 2 1 4 4 H 1.48494 * 109.47247 * 270.00207 * 3 2 1 5 5 H 1.48500 * 109.47236 * 30.00462 * 3 2 1 6 6 H 1.48498 * 109.46987 * 149.99822 * 3 2 1 7 7 C 1.37874 * 120.00348 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99867 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00078 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47185 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47170 * 54.99831 * 10 9 7 12 12 C 1.53005 * 109.47374 * 295.00444 * 10 9 7 13 13 C 1.53008 * 109.46789 * 300.00136 * 12 10 9 14 14 C 1.53001 * 109.47001 * 299.99866 * 13 12 10 15 15 C 1.52993 * 109.47105 * 59.99921 * 14 13 12 16 16 H 1.09004 * 109.47128 * 60.00233 * 15 14 13 17 17 C 1.53001 * 109.47105 * 179.97438 * 15 14 13 18 18 H 1.08997 * 109.47673 * 173.83365 * 17 15 14 19 19 F 1.39907 * 109.46975 * 53.83479 * 17 15 14 20 20 C 1.52999 * 109.47067 * 293.83539 * 17 15 14 21 21 F 1.39898 * 109.47126 * 64.75664 * 20 17 15 22 22 F 1.39899 * 109.47124 * 184.75490 * 20 17 15 23 23 F 1.39900 * 109.47407 * 304.75677 * 20 17 15 24 24 C 1.52996 * 109.47485 * 300.00086 * 15 14 13 25 25 H 0.96998 * 120.00304 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.46627 * 60.00220 * 9 7 2 27 27 H 1.08997 * 109.47148 * 300.00489 * 9 7 2 28 28 H 1.09000 * 109.47168 * 59.99283 * 12 10 9 29 29 H 1.08994 * 109.47564 * 179.97438 * 12 10 9 30 30 H 1.08994 * 109.46822 * 59.99858 * 13 12 10 31 31 H 1.08997 * 109.46571 * 180.02562 * 13 12 10 32 32 H 1.09004 * 109.46937 * 300.00036 * 14 13 12 33 33 H 1.09000 * 109.47134 * 180.02562 * 14 13 12 34 34 H 1.09005 * 109.47555 * 180.02562 * 24 15 14 35 35 H 1.09002 * 109.47327 * 299.99725 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5117 -1.1939 -0.0011 10 6 4.0217 -2.6363 -0.0023 11 1 3.5868 -3.1748 -0.8442 12 6 3.6174 -3.3214 1.3047 13 6 4.2279 -2.5654 2.4867 14 6 5.7527 -2.5671 2.3605 15 6 6.1569 -1.8822 1.0535 16 1 5.7935 -0.8545 1.0543 17 6 7.6817 -1.8833 0.9275 18 1 7.9658 -1.4953 -0.0506 19 9 8.1603 -3.1904 1.0676 20 6 8.2844 -0.9995 2.0214 21 9 8.0114 -1.5575 3.2749 22 9 9.6690 -0.9131 1.8410 23 9 7.7239 0.2803 1.9486 24 6 5.5465 -2.6380 -0.1285 25 1 -0.4850 0.8400 0.0004 26 1 3.8753 -0.6802 0.8889 27 1 3.8746 -0.6798 -0.8911 28 1 2.5312 -3.3201 1.3947 29 1 3.9804 -4.3491 1.3037 30 1 3.8645 -1.5379 2.4875 31 1 3.9402 -3.0538 3.4178 32 1 6.1161 -3.5948 2.3596 33 1 6.1876 -2.0290 3.2027 34 1 5.8349 -2.1503 -1.0597 35 1 5.9099 -3.6656 -0.1294 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261166682.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:07 Heat of formation + Delta-G solvation = -246.709994 kcal Electronic energy + Delta-G solvation = -22159.684735 eV Core-core repulsion = 18269.247199 eV Total energy + Delta-G solvation = -3890.437535 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.39289 -49.22617 -48.79754 -48.52380 -40.06002 -35.23520 -33.81350 -32.41394 -29.91701 -28.92305 -25.06146 -24.29713 -23.23631 -22.19756 -19.83476 -19.71783 -19.36706 -18.94077 -18.76007 -17.06599 -16.93074 -16.25561 -16.05330 -15.64548 -15.55804 -15.35304 -15.11621 -15.05105 -14.96537 -14.86555 -14.71016 -14.28442 -14.20338 -13.59578 -13.41346 -13.06373 -12.74666 -12.62536 -12.35236 -12.19940 -11.90315 -11.79741 -11.59022 -11.43701 -10.90521 -10.82996 -10.67408 -10.60122 -8.22882 -6.23688 1.36457 1.38840 1.41080 1.49092 2.39272 2.45791 2.70056 2.81411 3.13271 3.30901 3.60279 3.64358 3.89141 4.10016 4.27887 4.43846 4.49559 4.57122 4.61526 4.67253 4.77454 5.01220 5.09263 5.17839 5.20757 5.26585 5.31219 5.49767 5.60514 5.66214 5.76610 5.82030 6.39170 6.84662 7.39441 8.94080 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.024298 B = 0.006561 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.065389 B = 4266.432545 C = 4828.467517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.001 3.999 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.242 1.242 7 C -0.512 4.512 8 H 0.033 0.967 9 C -0.009 4.009 10 C -0.073 4.073 11 H 0.054 0.946 12 C -0.103 4.103 13 C -0.114 4.114 14 C -0.124 4.124 15 C -0.122 4.122 16 H 0.096 0.904 17 C 0.069 3.931 18 H 0.160 0.840 19 F -0.180 7.180 20 C 0.431 3.569 21 F -0.175 7.175 22 F -0.179 7.179 23 F -0.175 7.175 24 C -0.097 4.097 25 H 0.262 0.738 26 H 0.028 0.972 27 H 0.015 0.985 28 H 0.037 0.963 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.845 -3.344 3.050 20.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.195 4.195 3 Si 0.764 3.236 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.165 1.165 7 C -0.550 4.550 8 H 0.051 0.949 9 C -0.046 4.046 10 C -0.091 4.091 11 H 0.073 0.927 12 C -0.140 4.140 13 C -0.151 4.151 14 C -0.161 4.161 15 C -0.140 4.140 16 H 0.114 0.886 17 C 0.032 3.968 18 H 0.177 0.823 19 F -0.161 7.161 20 C 0.376 3.624 21 F -0.156 7.156 22 F -0.160 7.160 23 F -0.156 7.156 24 C -0.134 4.134 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.033 0.967 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 19.744 -3.258 3.086 20.248 hybrid contribution -0.460 0.919 0.211 1.049 sum 19.284 -2.339 3.297 19.703 Atomic orbital electron populations 1.70079 1.08305 1.27712 1.53752 1.25960 0.95451 1.03222 0.94843 0.85810 0.79843 0.78897 0.79075 1.19358 1.21775 1.16497 1.21500 0.92292 0.92636 1.48559 0.94909 1.19702 0.93649 0.94819 0.96441 1.20914 0.94379 0.96516 0.97308 0.92730 1.21396 0.99463 0.98430 0.94731 1.21445 0.95001 1.00595 0.98067 1.21868 0.96116 1.01878 0.96252 1.21917 0.90041 1.03397 0.98670 0.88575 1.22964 0.95968 0.78775 0.99116 0.82280 1.92901 1.89343 1.36923 1.96922 1.21285 0.76646 0.80488 0.83971 1.93134 1.92839 1.84911 1.44729 1.93215 1.31240 1.96322 1.95209 1.93226 1.84942 1.41141 1.96300 1.21540 0.94473 1.00875 0.96551 0.92916 0.95373 0.96714 0.94418 0.91547 0.93238 0.91611 0.90413 0.90297 0.90265 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.02 13.96 21.45 0.30 -59.72 16 2 C 0.00 0.05 5.47 84.65 0.46 0.51 16 3 Si 0.94 43.65 27.47 68.60 1.88 45.53 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 7 C -0.51 -28.43 8.96 25.60 0.23 -28.20 16 8 H 0.03 2.02 7.30 -2.91 -0.02 2.00 16 9 C -0.01 -0.39 2.81 29.85 0.08 -0.31 16 10 C -0.07 -2.56 2.61 -10.80 -0.03 -2.59 16 11 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 12 C -0.10 -3.54 5.26 30.60 0.16 -3.38 16 13 C -0.11 -3.58 5.65 30.60 0.17 -3.40 16 14 C -0.12 -3.19 4.52 30.59 0.14 -3.06 16 15 C -0.12 -2.98 1.69 -10.80 -0.02 -3.00 16 16 H 0.10 2.63 5.90 -2.38 -0.01 2.61 16 17 C 0.07 1.34 3.06 30.59 0.09 1.43 16 18 H 0.16 2.11 8.14 -2.39 -0.02 2.09 16 19 F -0.18 -3.80 15.98 44.97 0.72 -3.08 16 20 C 0.43 9.17 2.89 71.98 0.21 9.38 16 21 F -0.17 -4.08 14.09 44.97 0.63 -3.44 16 22 F -0.18 -3.74 17.32 44.97 0.78 -2.96 16 23 F -0.17 -4.07 16.50 44.97 0.74 -3.33 16 24 C -0.10 -2.50 4.66 30.59 0.14 -2.35 16 25 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 26 H 0.03 1.20 3.89 -2.38 -0.01 1.20 16 27 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 28 H 0.04 1.56 6.95 -2.39 -0.02 1.54 16 29 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 1.81 6.32 -2.39 -0.02 1.79 16 31 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.08 1.86 7.66 -2.38 -0.02 1.84 16 33 H 0.08 1.97 5.44 -2.39 -0.01 1.95 16 34 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.08 1.82 7.97 -2.39 -0.02 1.80 16 Total: -1.00 -63.72 281.66 7.75 -55.96 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 1.05 Total: 6.00 kcal Atomic # 6 Polarization: -36.61 SS G_CDS: 1.65 Total: -34.96 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: 0.30 Total: -59.72 kcal Atomic # 9 Polarization: -15.69 SS G_CDS: 2.87 Total: -12.82 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.88 Total: 45.53 kcal Total: -63.72 7.75 -55.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261166682.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.746 kcal (2) G-P(sol) polarization free energy of solvation -63.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds