Wall clock time and date at job start Mon Mar 30 2020 06:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99824 * 2 1 4 4 H 1.48511 * 109.47047 * 269.99537 * 3 2 1 5 5 H 1.48494 * 109.47594 * 29.99602 * 3 2 1 6 6 H 1.48498 * 109.47441 * 150.00257 * 3 2 1 7 7 C 1.37877 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99686 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99863 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47078 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.46879 * 55.00117 * 10 9 7 12 12 C 1.52997 * 109.47405 * 295.00504 * 10 9 7 13 13 C 1.52999 * 109.47568 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.46769 * 59.99623 * 13 12 10 15 15 C 1.52997 * 109.46985 * 299.99948 * 14 13 12 16 16 H 1.09001 * 109.47427 * 300.00154 * 15 14 13 17 17 C 1.53007 * 109.46985 * 180.02562 * 15 14 13 18 18 H 1.09008 * 109.46834 * 54.05604 * 17 15 14 19 19 F 1.39903 * 109.46898 * 294.05977 * 17 15 14 20 20 C 1.52999 * 109.47323 * 174.05754 * 17 15 14 21 21 F 1.39900 * 109.47117 * 65.91756 * 20 17 15 22 22 F 1.39895 * 109.46950 * 185.92118 * 20 17 15 23 23 F 1.39902 * 109.47015 * 305.91999 * 20 17 15 24 24 C 1.52997 * 109.47468 * 175.00042 * 10 9 7 25 25 H 0.97003 * 119.99792 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47017 * 59.99866 * 9 7 2 27 27 H 1.08998 * 109.47525 * 299.99781 * 9 7 2 28 28 H 1.09001 * 109.46786 * 299.99670 * 12 10 9 29 29 H 1.09000 * 109.47412 * 59.99451 * 12 10 9 30 30 H 1.08998 * 109.47581 * 179.97438 * 13 12 10 31 31 H 1.09001 * 109.47062 * 299.99824 * 13 12 10 32 32 H 1.09000 * 109.46784 * 180.02562 * 14 13 12 33 33 H 1.08997 * 109.47210 * 60.00770 * 14 13 12 34 34 H 1.09001 * 109.47009 * 60.00154 * 24 10 9 35 35 H 1.09001 * 109.47200 * 300.00297 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 1 3.5867 -3.1756 -0.8425 12 6 3.6173 -3.3203 1.3066 13 6 4.1268 -4.7630 1.3065 14 6 5.6517 -4.7652 1.1799 15 6 6.0558 -4.0815 -0.1278 16 1 5.6206 -4.6205 -0.9693 17 6 7.5806 -4.0843 -0.2546 18 1 7.9521 -5.1037 -0.1491 19 9 8.1335 -3.2804 0.7480 20 6 7.9793 -3.5357 -1.6261 21 9 7.6217 -2.1858 -1.7103 22 9 9.3622 -3.6632 -1.7953 23 9 7.3187 -4.2565 -2.6267 24 6 5.5464 -2.6383 -0.1273 25 1 -0.4850 0.8401 -0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8746 -0.6799 -0.8911 28 1 4.0523 -2.7811 2.1481 29 1 2.5311 -3.3190 1.3966 30 1 3.8392 -5.2500 2.2382 31 1 3.6916 -5.3019 0.4649 32 1 6.0146 -5.7930 1.1793 33 1 6.0869 -4.2264 2.0214 34 1 5.9813 -2.0991 0.7143 35 1 5.8344 -2.1512 -1.0589 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261166692.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:11 Heat of formation + Delta-G solvation = -235.863208 kcal Electronic energy + Delta-G solvation = -21836.377722 eV Core-core repulsion = 17946.410539 eV Total energy + Delta-G solvation = -3889.967183 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.45398 -48.32634 -47.85700 -47.58984 -38.50628 -33.84094 -32.27441 -31.30461 -28.48925 -27.27055 -23.84659 -22.92851 -21.66658 -20.18890 -19.31243 -18.82189 -18.53823 -18.11766 -16.77350 -16.10559 -15.62446 -14.94824 -14.65292 -14.48551 -14.38197 -14.18877 -14.13631 -14.02511 -13.91766 -13.78829 -13.33721 -12.98126 -12.56226 -12.31101 -11.88286 -11.58148 -11.46474 -11.21736 -10.95795 -10.76799 -10.64593 -10.38330 -10.05472 -9.68240 -9.55432 -9.25312 -8.99890 -8.49825 -6.01161 -3.98038 2.30086 3.33544 3.36692 3.41040 3.45716 3.59606 3.71808 4.16390 4.43787 4.48709 4.59652 4.91067 5.07368 5.32365 5.33886 5.54599 5.63091 5.71897 5.80106 5.88278 5.99528 6.12935 6.30304 6.40664 6.53387 6.61132 6.89545 6.94410 7.08876 7.31856 7.49851 7.83846 8.57607 9.04019 9.62327 11.12154 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.023461 B = 0.005837 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.178421 B = 4796.190492 C = 5413.769602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.876 3.124 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.514 4.514 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.067 4.067 11 H 0.062 0.938 12 C -0.108 4.108 13 C -0.118 4.118 14 C -0.108 4.108 15 C -0.118 4.118 16 H 0.100 0.900 17 C 0.062 3.938 18 H 0.125 0.875 19 F -0.176 7.176 20 C 0.430 3.570 21 F -0.164 7.164 22 F -0.181 7.181 23 F -0.171 7.171 24 C -0.131 4.131 25 H 0.262 0.738 26 H 0.016 0.984 27 H 0.011 0.989 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.609 -10.952 -0.301 19.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.135 4.135 3 Si 0.704 3.296 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.552 4.552 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.085 4.085 11 H 0.081 0.919 12 C -0.145 4.145 13 C -0.155 4.155 14 C -0.145 4.145 15 C -0.136 4.136 16 H 0.118 0.882 17 C 0.024 3.976 18 H 0.142 0.858 19 F -0.156 7.156 20 C 0.375 3.625 21 F -0.145 7.145 22 F -0.162 7.162 23 F -0.153 7.153 24 C -0.169 4.169 25 H 0.071 0.929 26 H 0.034 0.966 27 H 0.029 0.971 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.481 -10.794 -0.302 19.703 hybrid contribution 0.548 1.114 -0.262 1.269 sum 17.029 -9.680 -0.564 19.596 Atomic orbital electron populations 1.69916 1.06263 1.26761 1.51539 1.25022 0.94688 0.99087 0.94739 0.86828 0.80436 0.83838 0.78493 1.20389 1.21504 1.18989 1.21143 0.89444 0.94312 1.50259 0.90860 1.19616 0.97125 0.91748 0.96235 1.20962 0.91356 0.98946 0.97277 0.91926 1.21544 1.02131 0.93080 0.97792 1.21564 0.93751 0.98816 1.01396 1.21523 0.97877 0.99266 0.95831 1.21967 0.88883 1.01125 1.01665 0.88170 1.22908 0.98290 0.95262 0.81102 0.85771 1.92920 1.86717 1.75430 1.60568 1.21153 0.74966 0.77140 0.89214 1.93201 1.90833 1.33742 1.96730 1.93208 1.31082 1.95667 1.96284 1.93211 1.80645 1.77695 1.63723 1.22098 0.98574 0.92810 1.03380 0.92851 0.96609 0.97108 0.92751 0.90463 0.92198 0.92105 0.92204 0.91249 0.91346 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.91 13.96 55.43 0.77 -27.14 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.51 -14.36 8.96 -34.44 -0.31 -14.67 16 8 H 0.07 2.18 7.30 -52.49 -0.38 1.80 16 9 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 10 C -0.07 -1.27 2.14 -90.62 -0.19 -1.46 16 11 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 12 C -0.11 -1.88 5.01 -26.73 -0.13 -2.01 16 13 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 14 C -0.11 -1.22 5.13 -26.73 -0.14 -1.36 16 15 C -0.12 -1.43 1.95 -90.59 -0.18 -1.60 16 16 H 0.10 1.15 7.48 -51.93 -0.39 0.76 16 17 C 0.06 0.66 3.07 -26.73 -0.08 0.57 16 18 H 0.12 0.89 8.14 -51.92 -0.42 0.47 16 19 F -0.18 -2.20 15.96 2.25 0.04 -2.16 16 20 C 0.43 5.07 2.89 37.16 0.11 5.18 16 21 F -0.16 -2.31 14.14 2.25 0.03 -2.27 16 22 F -0.18 -2.11 17.32 2.25 0.04 -2.07 16 23 F -0.17 -2.01 16.46 2.25 0.04 -1.97 16 24 C -0.13 -2.07 3.79 -26.71 -0.10 -2.18 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 27 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 1.53 6.95 -51.93 -0.36 1.17 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.82 7.96 -51.93 -0.41 0.41 16 34 H 0.07 1.12 7.67 -51.93 -0.40 0.72 16 35 H 0.07 1.22 5.49 -51.93 -0.29 0.93 16 LS Contribution 288.69 15.07 4.35 4.35 Total: -1.00 -30.11 288.69 -5.48 -35.60 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: -4.70 Total: -3.88 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -1.38 Total: -17.78 kcal Atomic # 7 Polarization: -27.91 SS G_CDS: 0.77 Total: -27.14 kcal Atomic # 9 Polarization: -8.62 SS G_CDS: 0.14 Total: -8.48 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.11 -5.48 -35.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261166692.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.268 kcal (2) G-P(sol) polarization free energy of solvation -30.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds