Wall clock time and date at job start Mon Mar 30 2020 06:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99824 * 2 1 4 4 H 1.48511 * 109.47047 * 269.99537 * 3 2 1 5 5 H 1.48494 * 109.47594 * 29.99602 * 3 2 1 6 6 H 1.48498 * 109.47441 * 150.00257 * 3 2 1 7 7 C 1.37877 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99686 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99863 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47078 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.46879 * 55.00117 * 10 9 7 12 12 C 1.52997 * 109.47405 * 295.00504 * 10 9 7 13 13 C 1.52999 * 109.47568 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.46769 * 59.99623 * 13 12 10 15 15 C 1.52997 * 109.46985 * 299.99948 * 14 13 12 16 16 H 1.09001 * 109.47427 * 300.00154 * 15 14 13 17 17 C 1.53007 * 109.46985 * 180.02562 * 15 14 13 18 18 H 1.09008 * 109.46834 * 54.05604 * 17 15 14 19 19 F 1.39903 * 109.46898 * 294.05977 * 17 15 14 20 20 C 1.52999 * 109.47323 * 174.05754 * 17 15 14 21 21 F 1.39900 * 109.47117 * 65.91756 * 20 17 15 22 22 F 1.39895 * 109.46950 * 185.92118 * 20 17 15 23 23 F 1.39902 * 109.47015 * 305.91999 * 20 17 15 24 24 C 1.52997 * 109.47468 * 175.00042 * 10 9 7 25 25 H 0.97003 * 119.99792 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47017 * 59.99866 * 9 7 2 27 27 H 1.08998 * 109.47525 * 299.99781 * 9 7 2 28 28 H 1.09001 * 109.46786 * 299.99670 * 12 10 9 29 29 H 1.09000 * 109.47412 * 59.99451 * 12 10 9 30 30 H 1.08998 * 109.47581 * 179.97438 * 13 12 10 31 31 H 1.09001 * 109.47062 * 299.99824 * 13 12 10 32 32 H 1.09000 * 109.46784 * 180.02562 * 14 13 12 33 33 H 1.08997 * 109.47210 * 60.00770 * 14 13 12 34 34 H 1.09001 * 109.47009 * 60.00154 * 24 10 9 35 35 H 1.09001 * 109.47200 * 300.00297 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 1 3.5867 -3.1756 -0.8425 12 6 3.6173 -3.3203 1.3066 13 6 4.1268 -4.7630 1.3065 14 6 5.6517 -4.7652 1.1799 15 6 6.0558 -4.0815 -0.1278 16 1 5.6206 -4.6205 -0.9693 17 6 7.5806 -4.0843 -0.2546 18 1 7.9521 -5.1037 -0.1491 19 9 8.1335 -3.2804 0.7480 20 6 7.9793 -3.5357 -1.6261 21 9 7.6217 -2.1858 -1.7103 22 9 9.3622 -3.6632 -1.7953 23 9 7.3187 -4.2565 -2.6267 24 6 5.5464 -2.6383 -0.1273 25 1 -0.4850 0.8401 -0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8746 -0.6799 -0.8911 28 1 4.0523 -2.7811 2.1481 29 1 2.5311 -3.3190 1.3966 30 1 3.8392 -5.2500 2.2382 31 1 3.6916 -5.3019 0.4649 32 1 6.0146 -5.7930 1.1793 33 1 6.0869 -4.2264 2.0214 34 1 5.9813 -2.0991 0.7143 35 1 5.8344 -2.1512 -1.0589 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261166692.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:10 Heat of formation + Delta-G solvation = -252.296966 kcal Electronic energy + Delta-G solvation = -21837.090344 eV Core-core repulsion = 17946.410539 eV Total energy + Delta-G solvation = -3890.679805 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -51.37146 -49.21490 -48.78480 -48.51021 -39.74732 -35.54142 -33.88068 -32.73436 -29.70772 -28.86737 -24.91161 -24.63048 -22.80241 -21.49554 -20.64743 -19.76895 -19.47511 -19.05569 -18.86842 -17.04715 -16.70898 -16.27332 -16.02995 -15.55502 -15.45123 -15.35337 -15.17520 -15.08656 -14.86931 -14.86836 -14.71645 -14.55048 -14.16233 -13.72951 -13.43137 -13.04816 -12.56168 -12.46660 -12.36685 -12.19019 -12.03110 -11.81385 -11.65854 -11.53638 -11.14017 -10.81537 -10.73701 -10.65430 -8.27666 -6.29034 1.33142 1.34619 1.43611 1.46517 2.35648 2.49183 2.71612 2.83360 3.07660 3.30942 3.61271 3.63645 3.88681 4.11762 4.24427 4.37283 4.43721 4.56746 4.61152 4.69027 4.77617 5.00453 5.08738 5.15475 5.21117 5.23606 5.39470 5.43629 5.50527 5.60213 5.75737 5.77230 6.33235 6.78169 7.34659 8.88844 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.023461 B = 0.005837 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.178421 B = 4796.190492 C = 5413.769602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.251 1.251 7 C -0.516 4.516 8 H 0.039 0.961 9 C -0.010 4.010 10 C -0.065 4.065 11 H 0.053 0.947 12 C -0.107 4.107 13 C -0.112 4.112 14 C -0.102 4.102 15 C -0.115 4.115 16 H 0.111 0.889 17 C 0.069 3.931 18 H 0.172 0.828 19 F -0.186 7.186 20 C 0.427 3.573 21 F -0.182 7.182 22 F -0.180 7.180 23 F -0.171 7.171 24 C -0.126 4.126 25 H 0.264 0.736 26 H 0.013 0.987 27 H 0.009 0.991 28 H 0.050 0.950 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.167 -12.072 -0.039 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.175 1.175 7 C -0.554 4.554 8 H 0.057 0.943 9 C -0.047 4.047 10 C -0.083 4.083 11 H 0.071 0.929 12 C -0.144 4.144 13 C -0.149 4.149 14 C -0.139 4.139 15 C -0.134 4.134 16 H 0.129 0.871 17 C 0.032 3.968 18 H 0.189 0.811 19 F -0.167 7.167 20 C 0.372 3.628 21 F -0.163 7.163 22 F -0.161 7.161 23 F -0.153 7.153 24 C -0.163 4.163 25 H 0.073 0.927 26 H 0.031 0.969 27 H 0.027 0.973 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 19.056 -11.925 -0.040 22.480 hybrid contribution -0.322 1.420 -0.369 1.502 sum 18.734 -10.505 -0.409 21.483 Atomic orbital electron populations 1.70061 1.08063 1.27856 1.53326 1.25936 0.95531 1.03138 0.94658 0.85781 0.79518 0.79093 0.79015 1.19494 1.20946 1.17511 1.21460 0.91835 0.93005 1.49083 0.94293 1.19601 0.94142 0.95197 0.95750 1.20862 0.93887 0.95782 0.97776 0.92898 1.21469 0.99840 0.96355 0.96757 1.21503 0.95549 0.95362 1.02494 1.21516 0.95834 1.01517 0.95037 1.21920 0.90252 0.98355 1.02852 0.87051 1.23076 0.96869 0.97123 0.79762 0.81109 1.92905 1.86777 1.76071 1.60923 1.21420 0.74997 0.76394 0.89969 1.93165 1.91008 1.35306 1.96857 1.93211 1.31001 1.95580 1.96332 1.93213 1.80638 1.77507 1.63900 1.21959 0.95661 0.95914 1.02801 0.92692 0.96870 0.97280 0.93124 0.94234 0.90614 0.91714 0.88197 0.91395 0.91944 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 2 C 0.00 0.22 5.47 84.65 0.46 0.68 16 3 Si 0.94 45.76 27.47 68.60 1.88 47.64 16 4 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.25 -11.53 6.54 99.48 0.65 -10.88 16 7 C -0.52 -29.88 8.96 25.60 0.23 -29.65 16 8 H 0.04 2.45 7.30 -2.91 -0.02 2.43 16 9 C -0.01 -0.46 3.52 29.85 0.10 -0.35 16 10 C -0.06 -2.45 2.14 -10.79 -0.02 -2.47 16 11 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 12 C -0.11 -3.73 5.01 30.59 0.15 -3.57 16 13 C -0.11 -2.71 5.92 30.60 0.18 -2.53 16 14 C -0.10 -1.90 5.13 30.60 0.16 -1.74 16 15 C -0.12 -2.42 1.95 -10.78 -0.02 -2.44 16 16 H 0.11 2.15 7.48 -2.39 -0.02 2.13 16 17 C 0.07 1.19 3.07 30.60 0.09 1.28 16 18 H 0.17 1.46 8.14 -2.38 -0.02 1.44 16 19 F -0.19 -4.06 15.96 44.97 0.72 -3.34 16 20 C 0.43 8.94 2.89 71.98 0.21 9.15 16 21 F -0.18 -4.86 14.14 44.97 0.64 -4.22 16 22 F -0.18 -3.72 17.32 44.97 0.78 -2.94 16 23 F -0.17 -3.57 16.46 44.97 0.74 -2.83 16 24 C -0.13 -3.80 3.79 30.61 0.12 -3.69 16 25 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 26 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 27 H 0.01 0.43 7.57 -2.39 -0.02 0.41 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.04 1.64 6.95 -2.39 -0.02 1.63 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.34 7.96 -2.39 -0.02 1.32 16 34 H 0.06 1.95 7.67 -2.39 -0.02 1.94 16 35 H 0.07 2.16 5.49 -2.39 -0.01 2.15 16 Total: -1.00 -67.50 288.69 7.76 -59.75 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: 1.04 Total: 1.48 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 1.66 Total: -35.34 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 0.30 Total: -60.20 kcal Atomic # 9 Polarization: -16.20 SS G_CDS: 2.87 Total: -13.33 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.88 Total: 47.64 kcal Total: -67.50 7.76 -59.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261166692.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -192.551 kcal (2) G-P(sol) polarization free energy of solvation -67.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds