Wall clock time and date at job start Mon Mar 30 2020 06:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00227 * 2 1 4 4 H 1.48498 * 109.47336 * 239.99654 * 3 2 1 5 5 H 1.48504 * 109.47221 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47085 * 119.99707 * 3 2 1 7 7 C 1.37877 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00473 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99811 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46841 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47368 * 55.00258 * 10 9 7 12 12 C 1.53005 * 109.47651 * 295.00268 * 10 9 7 13 13 C 1.52997 * 109.46949 * 300.00287 * 12 10 9 14 14 C 1.52999 * 109.47337 * 299.99748 * 13 12 10 15 15 C 1.53003 * 109.47026 * 59.99681 * 14 13 12 16 16 H 1.09003 * 109.47192 * 60.00829 * 15 14 13 17 17 C 1.52999 * 109.47026 * 179.97438 * 15 14 13 18 18 H 1.08998 * 109.47635 * 305.77039 * 17 15 14 19 19 F 1.39901 * 109.47358 * 65.77730 * 17 15 14 20 20 C 1.53008 * 109.47156 * 185.77510 * 17 15 14 21 21 F 1.39902 * 109.47096 * 54.03222 * 20 17 15 22 22 F 1.39896 * 109.47153 * 174.03525 * 20 17 15 23 23 F 1.39905 * 109.46812 * 294.02972 * 20 17 15 24 24 C 1.52997 * 109.47627 * 300.00559 * 15 14 13 25 25 H 0.96998 * 119.99652 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46709 * 60.00448 * 9 7 2 27 27 H 1.08992 * 109.47021 * 300.00381 * 9 7 2 28 28 H 1.08996 * 109.47224 * 180.02562 * 12 10 9 29 29 H 1.08996 * 109.46861 * 60.00131 * 12 10 9 30 30 H 1.09000 * 109.47383 * 179.97438 * 13 12 10 31 31 H 1.09003 * 109.47396 * 59.99234 * 13 12 10 32 32 H 1.08997 * 109.47369 * 179.97438 * 14 13 12 33 33 H 1.08996 * 109.47081 * 300.00259 * 14 13 12 34 34 H 1.08997 * 109.46974 * 180.02562 * 24 15 14 35 35 H 1.09005 * 109.46748 * 299.99912 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9293 -3.5552 0.8423 12 6 3.0401 -3.6536 -1.3068 13 6 2.0799 -3.8036 -2.4884 14 6 1.3190 -5.1250 -2.3628 15 6 0.5242 -5.1335 -1.0555 16 1 -0.1842 -4.3051 -1.0555 17 6 -0.2372 -6.4547 -0.9302 18 1 -0.8449 -6.6099 -1.8216 19 9 0.6744 -7.5076 -0.7980 20 6 -1.1428 -6.4065 0.3022 21 9 -1.9625 -5.2748 0.2346 22 9 -1.9382 -7.5567 0.3416 23 9 -0.3557 -6.3442 1.4571 24 6 1.4843 -4.9835 0.1262 25 1 -0.4849 0.8401 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 3.7481 -4.4823 -1.3069 29 1 3.5822 -2.7122 -1.3963 30 1 2.6461 -3.7971 -3.4198 31 1 1.3715 -2.9751 -2.4885 32 1 0.6346 -5.2316 -3.2044 33 1 2.0273 -5.9535 -2.3628 34 1 0.9181 -4.9901 1.0575 35 1 2.1927 -5.8120 0.1262 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261166701.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:14 Heat of formation + Delta-G solvation = -234.837605 kcal Electronic energy + Delta-G solvation = -22185.644810 eV Core-core repulsion = 18295.722100 eV Total energy + Delta-G solvation = -3889.922710 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.24803 -48.13475 -47.67178 -47.38314 -38.58706 -33.47772 -32.15136 -30.81336 -28.26187 -26.92498 -23.68430 -23.02906 -21.73781 -20.96476 -18.69299 -18.44349 -17.97729 -17.85452 -16.30674 -15.93202 -15.56434 -14.78022 -14.48561 -14.42159 -14.33125 -14.10143 -13.93280 -13.81622 -13.69780 -13.63294 -13.08533 -12.89928 -12.36175 -11.89149 -11.70784 -11.33887 -11.30844 -11.07503 -10.89435 -10.82723 -10.52803 -10.27595 -9.96762 -9.74158 -9.31060 -8.98820 -8.86697 -8.30136 -5.97387 -3.98403 2.51182 3.33623 3.38616 3.40793 3.56813 3.81541 3.92974 4.38505 4.47723 4.64817 4.83290 5.15254 5.28392 5.38409 5.58767 5.82245 5.87947 5.96349 5.99482 6.06917 6.11575 6.35206 6.50260 6.55570 6.77432 6.85963 6.92862 7.07136 7.27666 7.71924 7.85490 8.02981 8.46946 9.07580 9.64872 11.13634 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.026146 B = 0.006080 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.658280 B = 4604.184835 C = 5170.842172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.026 3.974 10 C -0.082 4.082 11 H 0.059 0.941 12 C -0.102 4.102 13 C -0.117 4.117 14 C -0.104 4.104 15 C -0.119 4.119 16 H 0.113 0.887 17 C 0.061 3.939 18 H 0.124 0.876 19 F -0.180 7.180 20 C 0.430 3.570 21 F -0.165 7.165 22 F -0.184 7.184 23 F -0.167 7.167 24 C -0.125 4.125 25 H 0.260 0.740 26 H 0.024 0.976 27 H 0.013 0.987 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.013 -13.456 -3.563 13.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.100 4.100 11 H 0.077 0.923 12 C -0.140 4.140 13 C -0.155 4.155 14 C -0.141 4.141 15 C -0.137 4.137 16 H 0.131 0.869 17 C 0.023 3.977 18 H 0.142 0.858 19 F -0.161 7.161 20 C 0.376 3.624 21 F -0.147 7.147 22 F -0.165 7.165 23 F -0.148 7.148 24 C -0.162 4.162 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.031 0.969 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.165 -13.365 -3.527 13.872 hybrid contribution 0.249 0.870 0.282 0.948 sum -0.916 -12.495 -3.246 12.942 Atomic orbital electron populations 1.69948 1.05946 1.26538 1.51050 1.24995 0.94787 0.99028 0.95575 0.86739 0.79637 0.83553 0.78540 1.20349 1.21410 1.20370 1.21217 0.92900 0.91011 1.50129 0.92779 1.19234 0.93690 0.91001 0.97189 1.21172 0.97960 0.94328 0.96570 0.92271 1.21430 0.97076 1.00715 0.94770 1.21513 0.99157 0.96916 0.97876 1.21481 0.98631 0.99453 0.94584 1.21980 0.99432 0.93301 0.99014 0.86937 1.22963 0.90111 0.89283 0.95320 0.85845 1.92888 1.68171 1.58286 1.96720 1.21135 0.80614 0.74049 0.86641 1.93259 1.73768 1.51241 1.96389 1.93195 1.75819 1.50621 1.96868 1.93168 1.73448 1.95667 1.52532 1.21963 0.98116 0.99370 0.96734 0.93069 0.95799 0.96912 0.94281 0.91184 0.92907 0.90038 0.92305 0.91922 0.90814 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -13.94 8.41 -34.44 -0.29 -14.23 16 8 H 0.05 1.43 7.06 -52.49 -0.37 1.06 16 9 C 0.03 0.62 3.74 -27.88 -0.10 0.52 16 10 C -0.08 -1.61 2.61 -90.62 -0.24 -1.85 16 11 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 12 C -0.10 -1.83 5.26 -26.73 -0.14 -1.97 16 13 C -0.12 -1.91 5.65 -26.73 -0.15 -2.06 16 14 C -0.10 -1.44 5.13 -26.73 -0.14 -1.58 16 15 C -0.12 -1.78 1.67 -90.62 -0.15 -1.94 16 16 H 0.11 1.90 5.88 -51.93 -0.31 1.59 16 17 C 0.06 0.77 3.07 -26.73 -0.08 0.69 16 18 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 19 F -0.18 -2.44 15.96 2.25 0.04 -2.40 16 20 C 0.43 6.03 2.89 37.16 0.11 6.14 16 21 F -0.17 -2.53 16.46 2.25 0.04 -2.50 16 22 F -0.18 -2.45 17.32 2.25 0.04 -2.41 16 23 F -0.17 -2.58 14.14 2.25 0.03 -2.55 16 24 C -0.12 -2.11 4.03 -26.73 -0.11 -2.22 16 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.02 0.60 4.82 -51.93 -0.25 0.35 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.36 6.95 -51.93 -0.36 1.00 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.54 6.32 -51.93 -0.33 1.22 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.82 7.96 -51.93 -0.41 0.41 16 34 H 0.07 1.30 5.49 -51.93 -0.29 1.02 16 35 H 0.06 0.92 7.67 -51.93 -0.40 0.52 16 LS Contribution 285.26 15.07 4.30 4.30 Total: -1.00 -28.68 285.26 -5.62 -34.29 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -4.38 Total: -2.55 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -1.39 Total: -16.98 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.74 Total: -25.56 kcal Atomic # 9 Polarization: -10.01 SS G_CDS: 0.14 Total: -9.86 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.68 -5.62 -34.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261166701.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.546 kcal (2) G-P(sol) polarization free energy of solvation -28.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds