Wall clock time and date at job start Mon Mar 30 2020 06:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00227 * 2 1 4 4 H 1.48498 * 109.47336 * 239.99654 * 3 2 1 5 5 H 1.48504 * 109.47221 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47085 * 119.99707 * 3 2 1 7 7 C 1.37877 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00473 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99811 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46841 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47368 * 55.00258 * 10 9 7 12 12 C 1.53005 * 109.47651 * 295.00268 * 10 9 7 13 13 C 1.52997 * 109.46949 * 300.00287 * 12 10 9 14 14 C 1.52999 * 109.47337 * 299.99748 * 13 12 10 15 15 C 1.53003 * 109.47026 * 59.99681 * 14 13 12 16 16 H 1.09003 * 109.47192 * 60.00829 * 15 14 13 17 17 C 1.52999 * 109.47026 * 179.97438 * 15 14 13 18 18 H 1.08998 * 109.47635 * 305.77039 * 17 15 14 19 19 F 1.39901 * 109.47358 * 65.77730 * 17 15 14 20 20 C 1.53008 * 109.47156 * 185.77510 * 17 15 14 21 21 F 1.39902 * 109.47096 * 54.03222 * 20 17 15 22 22 F 1.39896 * 109.47153 * 174.03525 * 20 17 15 23 23 F 1.39905 * 109.46812 * 294.02972 * 20 17 15 24 24 C 1.52997 * 109.47627 * 300.00559 * 15 14 13 25 25 H 0.96998 * 119.99652 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46709 * 60.00448 * 9 7 2 27 27 H 1.08992 * 109.47021 * 300.00381 * 9 7 2 28 28 H 1.08996 * 109.47224 * 180.02562 * 12 10 9 29 29 H 1.08996 * 109.46861 * 60.00131 * 12 10 9 30 30 H 1.09000 * 109.47383 * 179.97438 * 13 12 10 31 31 H 1.09003 * 109.47396 * 59.99234 * 13 12 10 32 32 H 1.08997 * 109.47369 * 179.97438 * 14 13 12 33 33 H 1.08996 * 109.47081 * 300.00259 * 14 13 12 34 34 H 1.08997 * 109.46974 * 180.02562 * 24 15 14 35 35 H 1.09005 * 109.46748 * 299.99912 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9293 -3.5552 0.8423 12 6 3.0401 -3.6536 -1.3068 13 6 2.0799 -3.8036 -2.4884 14 6 1.3190 -5.1250 -2.3628 15 6 0.5242 -5.1335 -1.0555 16 1 -0.1842 -4.3051 -1.0555 17 6 -0.2372 -6.4547 -0.9302 18 1 -0.8449 -6.6099 -1.8216 19 9 0.6744 -7.5076 -0.7980 20 6 -1.1428 -6.4065 0.3022 21 9 -1.9625 -5.2748 0.2346 22 9 -1.9382 -7.5567 0.3416 23 9 -0.3557 -6.3442 1.4571 24 6 1.4843 -4.9835 0.1262 25 1 -0.4849 0.8401 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 3.7481 -4.4823 -1.3069 29 1 3.5822 -2.7122 -1.3963 30 1 2.6461 -3.7971 -3.4198 31 1 1.3715 -2.9751 -2.4885 32 1 0.6346 -5.2316 -3.2044 33 1 2.0273 -5.9535 -2.3628 34 1 0.9181 -4.9901 1.0575 35 1 2.1927 -5.8120 0.1262 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261166701.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:13 Heat of formation + Delta-G solvation = -249.272823 kcal Electronic energy + Delta-G solvation = -22186.270768 eV Core-core repulsion = 18295.722100 eV Total energy + Delta-G solvation = -3890.548668 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -51.38224 -49.22348 -48.79109 -48.52050 -39.98857 -35.26700 -33.73254 -32.28368 -29.57308 -28.70407 -25.10100 -24.73554 -23.09129 -22.21460 -19.85379 -19.59019 -19.41412 -19.04723 -18.29576 -17.03792 -16.86842 -16.48967 -15.94160 -15.58038 -15.54127 -15.29549 -15.14103 -15.07637 -14.87333 -14.81942 -14.55759 -14.51439 -13.89868 -13.43476 -13.26036 -12.94481 -12.71527 -12.59835 -12.37519 -12.29764 -12.16796 -11.86229 -11.60990 -11.30669 -10.78249 -10.75943 -10.61969 -10.40920 -8.13278 -6.21031 1.40591 1.42197 1.43045 1.49762 2.43873 2.47746 2.72121 2.81659 3.19970 3.31831 3.60960 3.66098 3.92965 4.13616 4.31087 4.49114 4.53103 4.62498 4.69143 4.72823 4.81201 5.05033 5.16181 5.23870 5.32156 5.35335 5.40921 5.56076 5.60285 5.76350 5.89875 5.98610 6.36668 6.95097 7.46305 8.97736 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.026146 B = 0.006080 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.658280 B = 4604.184835 C = 5170.842172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.079 4.079 11 H 0.046 0.954 12 C -0.100 4.100 13 C -0.116 4.116 14 C -0.097 4.097 15 C -0.119 4.119 16 H 0.088 0.912 17 C 0.073 3.927 18 H 0.165 0.835 19 F -0.180 7.180 20 C 0.426 3.574 21 F -0.177 7.177 22 F -0.178 7.178 23 F -0.179 7.179 24 C -0.120 4.120 25 H 0.260 0.740 26 H 0.014 0.986 27 H -0.026 1.026 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.076 -14.669 -4.961 15.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.098 4.098 11 H 0.064 0.936 12 C -0.137 4.137 13 C -0.153 4.153 14 C -0.135 4.135 15 C -0.138 4.138 16 H 0.106 0.894 17 C 0.036 3.964 18 H 0.183 0.817 19 F -0.160 7.160 20 C 0.371 3.629 21 F -0.159 7.159 22 F -0.159 7.159 23 F -0.161 7.161 24 C -0.157 4.157 25 H 0.069 0.931 26 H 0.032 0.968 27 H -0.008 1.008 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.214 -14.588 -4.925 15.398 hybrid contribution -0.052 1.238 0.766 1.457 sum -0.266 -13.350 -4.158 13.985 Atomic orbital electron populations 1.70083 1.07520 1.27353 1.52286 1.25844 0.95621 1.02760 0.95355 0.85687 0.78398 0.79111 0.78968 1.19181 1.21190 1.19766 1.21640 0.93242 0.92363 1.49328 0.92585 1.19075 0.93936 0.92304 0.94771 1.21054 0.97079 0.94082 0.97548 0.93562 1.21390 0.97471 1.00681 0.94190 1.21465 0.98494 0.97235 0.98128 1.21472 0.99098 0.98315 0.94566 1.21882 0.98885 0.94047 0.98996 0.89365 1.22968 0.89773 0.87785 0.95918 0.81739 1.92892 1.68263 1.58105 1.96754 1.21439 0.80751 0.73796 0.86880 1.93238 1.74180 1.52012 1.96428 1.93204 1.75707 1.50142 1.96849 1.93145 1.73750 1.95713 1.53461 1.21870 0.98515 0.98033 0.97315 0.93119 0.96754 1.00755 0.91456 0.93457 0.90575 0.93581 0.89485 0.90029 0.92201 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.95 44.29 29.54 68.60 2.03 46.32 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.53 -29.33 8.41 25.60 0.22 -29.11 16 8 H 0.06 3.02 7.06 -2.91 -0.02 3.00 16 9 C 0.04 1.82 3.74 29.85 0.11 1.93 16 10 C -0.08 -3.15 2.61 -10.79 -0.03 -3.18 16 11 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 12 C -0.10 -3.45 5.26 30.60 0.16 -3.29 16 13 C -0.12 -3.56 5.65 30.59 0.17 -3.39 16 14 C -0.10 -2.37 5.13 30.60 0.16 -2.22 16 15 C -0.12 -3.40 1.67 -10.79 -0.02 -3.42 16 16 H 0.09 2.99 5.88 -2.39 -0.01 2.98 16 17 C 0.07 1.65 3.07 30.60 0.09 1.75 16 18 H 0.17 2.47 8.14 -2.39 -0.02 2.45 16 19 F -0.18 -4.24 15.96 44.97 0.72 -3.52 16 20 C 0.43 11.45 2.89 71.98 0.21 11.66 16 21 F -0.18 -5.44 16.46 44.97 0.74 -4.70 16 22 F -0.18 -4.44 17.32 44.97 0.78 -3.66 16 23 F -0.18 -5.50 14.14 44.97 0.64 -4.87 16 24 C -0.12 -3.98 4.03 30.59 0.12 -3.86 16 25 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 26 H 0.01 0.75 4.82 -2.39 -0.01 0.74 16 27 H -0.03 -1.49 8.14 -2.39 -0.02 -1.51 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.05 1.82 6.95 -2.39 -0.02 1.81 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.05 1.74 6.32 -2.39 -0.02 1.73 16 32 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.08 1.75 7.96 -2.39 -0.02 1.73 16 34 H 0.06 2.15 5.49 -2.39 -0.01 2.13 16 35 H 0.08 2.25 7.67 -2.38 -0.02 2.23 16 Total: -1.00 -63.20 285.26 7.95 -55.25 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: 1.11 Total: 3.71 kcal Atomic # 6 Polarization: -34.23 SS G_CDS: 1.66 Total: -32.57 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.28 Total: -55.97 kcal Atomic # 9 Polarization: -19.62 SS G_CDS: 2.87 Total: -16.75 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -63.20 7.95 -55.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261166701.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.018 kcal (2) G-P(sol) polarization free energy of solvation -63.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -257.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds